co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G60890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036258: multivesicular body assembly	0.00E+00
2	GO:0006592: ornithine biosynthetic process	0.00E+00
3	GO:0006511: ubiquitin-dependent protein catabolic process	4.47E-17
4	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.46E-07
5	GO:0018279: protein N-linked glycosylation via asparagine	1.75E-05
6	GO:0030433: ubiquitin-dependent ERAD pathway	1.94E-05
7	GO:0051603: proteolysis involved in cellular protein catabolic process	3.17E-05
8	GO:0009651: response to salt stress	5.65E-05
9	GO:0030163: protein catabolic process	6.43E-05
10	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.10E-04
11	GO:0035494: SNARE complex disassembly	1.10E-04
12	GO:0006144: purine nucleobase metabolic process	1.10E-04
13	GO:0080120: CAAX-box protein maturation	1.10E-04
14	GO:0071586: CAAX-box protein processing	1.10E-04
15	GO:0019628: urate catabolic process	1.10E-04
16	GO:0006695: cholesterol biosynthetic process	2.57E-04
17	GO:0010372: positive regulation of gibberellin biosynthetic process	2.57E-04
18	GO:0051788: response to misfolded protein	2.57E-04
19	GO:0010359: regulation of anion channel activity	4.25E-04
20	GO:0043617: cellular response to sucrose starvation	4.25E-04
21	GO:0090630: activation of GTPase activity	4.25E-04
22	GO:0010498: proteasomal protein catabolic process	4.25E-04
23	GO:0009647: skotomorphogenesis	6.10E-04
24	GO:0010255: glucose mediated signaling pathway	6.10E-04
25	GO:0070676: intralumenal vesicle formation	6.10E-04
26	GO:0001676: long-chain fatty acid metabolic process	6.10E-04
27	GO:0046686: response to cadmium ion	7.35E-04
28	GO:0009646: response to absence of light	7.69E-04
29	GO:0010483: pollen tube reception	8.10E-04
30	GO:0046355: mannan catabolic process	8.10E-04
31	GO:0010363: regulation of plant-type hypersensitive response	8.10E-04
32	GO:0006564: L-serine biosynthetic process	1.02E-03
33	GO:0005513: detection of calcium ion	1.02E-03
34	GO:0006461: protein complex assembly	1.02E-03
35	GO:0016579: protein deubiquitination	1.18E-03
36	GO:0043248: proteasome assembly	1.25E-03
37	GO:0010189: vitamin E biosynthetic process	1.49E-03
38	GO:0048528: post-embryonic root development	1.75E-03
39	GO:0000338: protein deneddylation	1.75E-03
40	GO:0006402: mRNA catabolic process	2.03E-03
41	GO:0031540: regulation of anthocyanin biosynthetic process	2.03E-03
42	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.03E-03
43	GO:0006526: arginine biosynthetic process	2.32E-03
44	GO:0006972: hyperosmotic response	2.32E-03
45	GO:0010099: regulation of photomorphogenesis	2.32E-03
46	GO:0046685: response to arsenic-containing substance	2.62E-03
47	GO:0045454: cell redox homeostasis	3.51E-03
48	GO:0043085: positive regulation of catalytic activity	3.59E-03
49	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	3.93E-03
50	GO:0006820: anion transport	3.93E-03
51	GO:0006096: glycolytic process	4.14E-03
52	GO:0006829: zinc II ion transport	4.30E-03
53	GO:0034605: cellular response to heat	4.66E-03
54	GO:0009553: embryo sac development	4.83E-03
55	GO:0007031: peroxisome organization	5.04E-03
56	GO:0034976: response to endoplasmic reticulum stress	5.44E-03
57	GO:0000162: tryptophan biosynthetic process	5.44E-03
58	GO:0006487: protein N-linked glycosylation	5.84E-03
59	GO:0010431: seed maturation	6.67E-03
60	GO:0009411: response to UV	7.55E-03
61	GO:0040007: growth	7.55E-03
62	GO:0010227: floral organ abscission	7.55E-03
63	GO:0019722: calcium-mediated signaling	8.00E-03
64	GO:0009561: megagametogenesis	8.00E-03
65	GO:0009306: protein secretion	8.00E-03
66	GO:0010089: xylem development	8.00E-03
67	GO:0015031: protein transport	8.18E-03
68	GO:0051028: mRNA transport	8.46E-03
69	GO:0010154: fruit development	9.41E-03
70	GO:0006662: glycerol ether metabolic process	9.41E-03
71	GO:0048868: pollen tube development	9.41E-03
72	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	9.62E-03
73	GO:0061025: membrane fusion	9.91E-03
74	GO:0009617: response to bacterium	1.03E-02
75	GO:0048825: cotyledon development	1.04E-02
76	GO:0055072: iron ion homeostasis	1.04E-02
77	GO:0010193: response to ozone	1.09E-02
78	GO:0016132: brassinosteroid biosynthetic process	1.09E-02
79	GO:0031047: gene silencing by RNA	1.14E-02
80	GO:0006914: autophagy	1.25E-02
81	GO:0009567: double fertilization forming a zygote and endosperm	1.25E-02
82	GO:0009826: unidimensional cell growth	1.28E-02
83	GO:0016126: sterol biosynthetic process	1.42E-02
84	GO:0006888: ER to Golgi vesicle-mediated transport	1.59E-02
85	GO:0006950: response to stress	1.59E-02
86	GO:0010311: lateral root formation	1.77E-02
87	GO:0006811: ion transport	1.83E-02
88	GO:0006499: N-terminal protein myristoylation	1.83E-02
89	GO:0010119: regulation of stomatal movement	1.89E-02
90	GO:0010043: response to zinc ion	1.89E-02
91	GO:0034599: cellular response to oxidative stress	2.09E-02
92	GO:0030001: metal ion transport	2.22E-02
93	GO:0006631: fatty acid metabolic process	2.29E-02
94	GO:0009640: photomorphogenesis	2.42E-02
95	GO:0009744: response to sucrose	2.42E-02
96	GO:0000209: protein polyubiquitination	2.49E-02
97	GO:0009664: plant-type cell wall organization	2.85E-02
98	GO:0009585: red, far-red light phototransduction	2.99E-02
99	GO:0009736: cytokinin-activated signaling pathway	2.99E-02
100	GO:0009809: lignin biosynthetic process	2.99E-02
101	GO:0018105: peptidyl-serine phosphorylation	3.93E-02
102	GO:0009735: response to cytokinin	3.96E-02
103	GO:0009555: pollen development	4.33E-02
104	GO:0055114: oxidation-reduction process	4.69E-02
105	GO:0042744: hydrogen peroxide catabolic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
2	GO:0004846: urate oxidase activity	0.00E+00
3	GO:0008777: acetylornithine deacetylase activity	0.00E+00
4	GO:0047598: 7-dehydrocholesterol reductase activity	0.00E+00
5	GO:0009918: sterol delta7 reductase activity	0.00E+00
6	GO:0004298: threonine-type endopeptidase activity	9.36E-16
7	GO:0008233: peptidase activity	8.72E-09
8	GO:0036402: proteasome-activating ATPase activity	1.46E-07
9	GO:0017025: TBP-class protein binding	8.23E-06
10	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.75E-05
11	GO:0019786: Atg8-specific protease activity	1.10E-04
12	GO:0015157: oligosaccharide transmembrane transporter activity	1.10E-04
13	GO:0030955: potassium ion binding	1.24E-04
14	GO:0004743: pyruvate kinase activity	1.24E-04
15	GO:0019779: Atg8 activating enzyme activity	2.57E-04
16	GO:0004640: phosphoribosylanthranilate isomerase activity	2.57E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	2.57E-04
18	GO:0004175: endopeptidase activity	2.61E-04
19	GO:0004557: alpha-galactosidase activity	4.25E-04
20	GO:0052692: raffinose alpha-galactosidase activity	4.25E-04
21	GO:0005483: soluble NSF attachment protein activity	4.25E-04
22	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	4.25E-04
23	GO:0004848: ureidoglycolate hydrolase activity	4.25E-04
24	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	4.43E-04
25	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.10E-04
26	GO:0019776: Atg8 ligase activity	8.10E-04
27	GO:0019905: syntaxin binding	8.10E-04
28	GO:0016985: mannan endo-1,4-beta-mannosidase activity	8.10E-04
29	GO:0004518: nuclease activity	9.34E-04
30	GO:0008237: metallopeptidase activity	1.12E-03
31	GO:0031593: polyubiquitin binding	1.25E-03
32	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.46E-03
33	GO:0004656: procollagen-proline 4-dioxygenase activity	1.49E-03
34	GO:0051920: peroxiredoxin activity	1.49E-03
35	GO:0102391: decanoate--CoA ligase activity	1.49E-03
36	GO:0016887: ATPase activity	1.59E-03
37	GO:0004467: long-chain fatty acid-CoA ligase activity	1.75E-03
38	GO:0015288: porin activity	2.03E-03
39	GO:0016209: antioxidant activity	2.03E-03
40	GO:0008308: voltage-gated anion channel activity	2.32E-03
41	GO:0008047: enzyme activator activity	3.25E-03
42	GO:0031418: L-ascorbic acid binding	5.84E-03
43	GO:0043130: ubiquitin binding	5.84E-03
44	GO:0046872: metal ion binding	6.62E-03
45	GO:0003756: protein disulfide isomerase activity	8.00E-03
46	GO:0047134: protein-disulfide reductase activity	8.46E-03
47	GO:0046873: metal ion transmembrane transporter activity	9.41E-03
48	GO:0000166: nucleotide binding	9.47E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	9.91E-03
50	GO:0016853: isomerase activity	9.91E-03
51	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.09E-02
52	GO:0004197: cysteine-type endopeptidase activity	1.14E-02
53	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.20E-02
54	GO:0000287: magnesium ion binding	1.31E-02
55	GO:0004601: peroxidase activity	1.33E-02
56	GO:0016597: amino acid binding	1.36E-02
57	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.53E-02
58	GO:0004683: calmodulin-dependent protein kinase activity	1.59E-02
59	GO:0005516: calmodulin binding	1.59E-02
60	GO:0005096: GTPase activator activity	1.77E-02
61	GO:0016787: hydrolase activity	1.80E-02
62	GO:0004222: metalloendopeptidase activity	1.83E-02
63	GO:0030145: manganese ion binding	1.89E-02
64	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.02E-02
65	GO:0035091: phosphatidylinositol binding	2.56E-02
66	GO:0005198: structural molecule activity	2.63E-02
67	GO:0051287: NAD binding	2.77E-02
68	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.99E-02
69	GO:0031625: ubiquitin protein ligase binding	3.22E-02
70	GO:0045735: nutrient reservoir activity	3.37E-02
71	GO:0015035: protein disulfide oxidoreductase activity	3.93E-02
72	GO:0008026: ATP-dependent helicase activity	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	5.74E-21
2	GO:0005839: proteasome core complex	9.36E-16
3	GO:0019773: proteasome core complex, alpha-subunit complex	5.54E-09
4	GO:0005829: cytosol	4.87E-08
5	GO:0031597: cytosolic proteasome complex	2.59E-07
6	GO:0031595: nuclear proteasome complex	4.26E-07
7	GO:0008540: proteasome regulatory particle, base subcomplex	1.90E-06
8	GO:0008250: oligosaccharyltransferase complex	1.75E-05
9	GO:0016442: RISC complex	1.10E-04
10	GO:0008541: proteasome regulatory particle, lid subcomplex	1.73E-04
11	GO:0005774: vacuolar membrane	2.85E-04
12	GO:0030176: integral component of endoplasmic reticulum membrane	2.94E-04
13	GO:0046861: glyoxysomal membrane	4.25E-04
14	GO:0005775: vacuolar lumen	6.10E-04
15	GO:0005776: autophagosome	8.10E-04
16	GO:0005773: vacuole	8.26E-04
17	GO:0000813: ESCRT I complex	1.02E-03
18	GO:0000421: autophagosome membrane	2.03E-03
19	GO:0046930: pore complex	2.32E-03
20	GO:0009514: glyoxysome	2.32E-03
21	GO:0008180: COP9 signalosome	2.62E-03
22	GO:0010494: cytoplasmic stress granule	2.62E-03
23	GO:0048471: perinuclear region of cytoplasm	3.59E-03
24	GO:0005635: nuclear envelope	3.76E-03
25	GO:0005665: DNA-directed RNA polymerase II, core complex	3.93E-03
26	GO:0005783: endoplasmic reticulum	4.78E-03
27	GO:0000419: DNA-directed RNA polymerase V complex	5.44E-03
28	GO:0005741: mitochondrial outer membrane	6.67E-03
29	GO:0005886: plasma membrane	6.75E-03
30	GO:0031410: cytoplasmic vesicle	7.11E-03
31	GO:0048046: apoplast	1.27E-02
32	GO:0000932: P-body	1.42E-02
33	GO:0005618: cell wall	1.47E-02
34	GO:0005643: nuclear pore	1.71E-02
35	GO:0000325: plant-type vacuole	1.89E-02
36	GO:0031902: late endosome membrane	2.29E-02
37	GO:0031201: SNARE complex	2.29E-02
38	GO:0009507: chloroplast	2.71E-02
39	GO:0031966: mitochondrial membrane	2.85E-02
40	GO:0005834: heterotrimeric G-protein complex	3.53E-02
41	GO:0009706: chloroplast inner membrane	3.85E-02
42	GO:0016020: membrane	3.89E-02
43	GO:0005789: endoplasmic reticulum membrane	3.91E-02
44	GO:0022626: cytosolic ribosome	4.14E-02
45	GO:0005777: peroxisome	4.95E-02