Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G60790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071474: cellular hyperosmotic response0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0018023: peptidyl-lysine trimethylation0.00E+00
8GO:0042820: vitamin B6 catabolic process0.00E+00
9GO:1901259: chloroplast rRNA processing1.63E-06
10GO:1902326: positive regulation of chlorophyll biosynthetic process2.46E-06
11GO:0009657: plastid organization5.89E-06
12GO:0015979: photosynthesis9.51E-05
13GO:0006353: DNA-templated transcription, termination2.03E-04
14GO:0019252: starch biosynthetic process2.11E-04
15GO:1904966: positive regulation of vitamin E biosynthetic process2.29E-04
16GO:1904964: positive regulation of phytol biosynthetic process2.29E-04
17GO:0043686: co-translational protein modification2.29E-04
18GO:0000476: maturation of 4.5S rRNA2.29E-04
19GO:0009443: pyridoxal 5'-phosphate salvage2.29E-04
20GO:0000967: rRNA 5'-end processing2.29E-04
21GO:1902478: negative regulation of defense response to bacterium, incompatible interaction2.29E-04
22GO:0032544: plastid translation2.51E-04
23GO:0032502: developmental process2.54E-04
24GO:0010027: thylakoid membrane organization3.82E-04
25GO:0009773: photosynthetic electron transport in photosystem I4.90E-04
26GO:0019684: photosynthesis, light reaction4.90E-04
27GO:0018026: peptidyl-lysine monomethylation5.10E-04
28GO:1904143: positive regulation of carotenoid biosynthetic process5.10E-04
29GO:0051262: protein tetramerization5.10E-04
30GO:0034470: ncRNA processing5.10E-04
31GO:0055114: oxidation-reduction process5.12E-04
32GO:0019853: L-ascorbic acid biosynthetic process8.00E-04
33GO:0015940: pantothenate biosynthetic process8.29E-04
34GO:0005977: glycogen metabolic process8.29E-04
35GO:0006954: inflammatory response8.29E-04
36GO:0034051: negative regulation of plant-type hypersensitive response8.29E-04
37GO:0006168: adenine salvage1.18E-03
38GO:0071786: endoplasmic reticulum tubular network organization1.18E-03
39GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.18E-03
40GO:0006166: purine ribonucleoside salvage1.18E-03
41GO:0009152: purine ribonucleotide biosynthetic process1.18E-03
42GO:0046653: tetrahydrofolate metabolic process1.18E-03
43GO:0051016: barbed-end actin filament capping1.18E-03
44GO:0009052: pentose-phosphate shunt, non-oxidative branch1.18E-03
45GO:0016556: mRNA modification1.18E-03
46GO:0009658: chloroplast organization1.56E-03
47GO:0010021: amylopectin biosynthetic process1.57E-03
48GO:0009765: photosynthesis, light harvesting1.57E-03
49GO:0006021: inositol biosynthetic process1.57E-03
50GO:0032543: mitochondrial translation2.01E-03
51GO:0006564: L-serine biosynthetic process2.01E-03
52GO:0031365: N-terminal protein amino acid modification2.01E-03
53GO:0044209: AMP salvage2.01E-03
54GO:0006465: signal peptide processing2.01E-03
55GO:0050665: hydrogen peroxide biosynthetic process2.48E-03
56GO:0032973: amino acid export2.48E-03
57GO:0000741: karyogamy2.48E-03
58GO:0010190: cytochrome b6f complex assembly2.48E-03
59GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.48E-03
60GO:0046855: inositol phosphate dephosphorylation2.48E-03
61GO:0048280: vesicle fusion with Golgi apparatus2.97E-03
62GO:0009854: oxidative photosynthetic carbon pathway2.97E-03
63GO:0009955: adaxial/abaxial pattern specification2.97E-03
64GO:0009772: photosynthetic electron transport in photosystem II3.50E-03
65GO:0043090: amino acid import3.50E-03
66GO:0051693: actin filament capping3.50E-03
67GO:0009769: photosynthesis, light harvesting in photosystem II3.50E-03
68GO:0009645: response to low light intensity stimulus3.50E-03
69GO:0015995: chlorophyll biosynthetic process4.01E-03
70GO:0010078: maintenance of root meristem identity4.06E-03
71GO:0007155: cell adhesion4.06E-03
72GO:0042255: ribosome assembly4.06E-03
73GO:0018298: protein-chromophore linkage4.44E-03
74GO:0010204: defense response signaling pathway, resistance gene-independent4.65E-03
75GO:0043562: cellular response to nitrogen levels4.65E-03
76GO:0017004: cytochrome complex assembly4.65E-03
77GO:0046685: response to arsenic-containing substance5.27E-03
78GO:0009821: alkaloid biosynthetic process5.27E-03
79GO:0080144: amino acid homeostasis5.27E-03
80GO:0046916: cellular transition metal ion homeostasis5.27E-03
81GO:0005982: starch metabolic process5.91E-03
82GO:0006779: porphyrin-containing compound biosynthetic process5.91E-03
83GO:0045036: protein targeting to chloroplast6.58E-03
84GO:0006896: Golgi to vacuole transport6.58E-03
85GO:0006782: protoporphyrinogen IX biosynthetic process6.58E-03
86GO:0010114: response to red light7.25E-03
87GO:0009684: indoleacetic acid biosynthetic process7.28E-03
88GO:0009089: lysine biosynthetic process via diaminopimelate7.28E-03
89GO:0006415: translational termination7.28E-03
90GO:0006790: sulfur compound metabolic process8.00E-03
91GO:0030036: actin cytoskeleton organization8.75E-03
92GO:0009767: photosynthetic electron transport chain8.75E-03
93GO:0010588: cotyledon vascular tissue pattern formation8.75E-03
94GO:0030048: actin filament-based movement8.75E-03
95GO:0009416: response to light stimulus9.37E-03
96GO:0007015: actin filament organization9.52E-03
97GO:0048467: gynoecium development9.52E-03
98GO:0010207: photosystem II assembly9.52E-03
99GO:0046854: phosphatidylinositol phosphorylation1.03E-02
100GO:0080167: response to karrikin1.03E-02
101GO:0048367: shoot system development1.20E-02
102GO:0009768: photosynthesis, light harvesting in photosystem I1.28E-02
103GO:0006418: tRNA aminoacylation for protein translation1.28E-02
104GO:0019915: lipid storage1.37E-02
105GO:0009269: response to desiccation1.37E-02
106GO:0009409: response to cold1.39E-02
107GO:0019748: secondary metabolic process1.46E-02
108GO:0016226: iron-sulfur cluster assembly1.46E-02
109GO:0006012: galactose metabolic process1.56E-02
110GO:0009686: gibberellin biosynthetic process1.56E-02
111GO:0006810: transport1.60E-02
112GO:0009306: protein secretion1.65E-02
113GO:0005975: carbohydrate metabolic process1.69E-02
114GO:0016117: carotenoid biosynthetic process1.75E-02
115GO:0042147: retrograde transport, endosome to Golgi1.75E-02
116GO:0080022: primary root development1.85E-02
117GO:0009058: biosynthetic process1.85E-02
118GO:0010087: phloem or xylem histogenesis1.85E-02
119GO:0006662: glycerol ether metabolic process1.95E-02
120GO:0010197: polar nucleus fusion1.95E-02
121GO:0009741: response to brassinosteroid1.95E-02
122GO:0010268: brassinosteroid homeostasis1.95E-02
123GO:0009958: positive gravitropism1.95E-02
124GO:0015986: ATP synthesis coupled proton transport2.05E-02
125GO:0009646: response to absence of light2.05E-02
126GO:0009851: auxin biosynthetic process2.16E-02
127GO:0006623: protein targeting to vacuole2.16E-02
128GO:0048825: cotyledon development2.16E-02
129GO:0006891: intra-Golgi vesicle-mediated transport2.27E-02
130GO:0016132: brassinosteroid biosynthetic process2.27E-02
131GO:1901657: glycosyl compound metabolic process2.48E-02
132GO:0016125: sterol metabolic process2.60E-02
133GO:0008380: RNA splicing2.89E-02
134GO:0009735: response to cytokinin3.11E-02
135GO:0006888: ER to Golgi vesicle-mediated transport3.31E-02
136GO:0016311: dephosphorylation3.43E-02
137GO:0009817: defense response to fungus, incompatible interaction3.56E-02
138GO:0009813: flavonoid biosynthetic process3.68E-02
139GO:0010218: response to far red light3.81E-02
140GO:0048527: lateral root development3.94E-02
141GO:0009637: response to blue light4.21E-02
142GO:0009853: photorespiration4.21E-02
143GO:0034599: cellular response to oxidative stress4.34E-02
144GO:0006839: mitochondrial transport4.62E-02
145GO:0030001: metal ion transport4.62E-02
146GO:0055085: transmembrane transport4.66E-02
RankGO TermAdjusted P value
1GO:0004823: leucine-tRNA ligase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0010349: L-galactose dehydrogenase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0009011: starch synthase activity3.72E-05
6GO:0004033: aldo-keto reductase (NADP) activity2.03E-04
7GO:0005080: protein kinase C binding2.29E-04
8GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.29E-04
9GO:0010347: L-galactose-1-phosphate phosphatase activity2.29E-04
10GO:0005227: calcium activated cation channel activity2.29E-04
11GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity2.29E-04
12GO:0051777: ent-kaurenoate oxidase activity2.29E-04
13GO:0004856: xylulokinase activity2.29E-04
14GO:0042586: peptide deformylase activity2.29E-04
15GO:0019843: rRNA binding4.96E-04
16GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.10E-04
17GO:0004617: phosphoglycerate dehydrogenase activity5.10E-04
18GO:0052832: inositol monophosphate 3-phosphatase activity5.10E-04
19GO:0033201: alpha-1,4-glucan synthase activity5.10E-04
20GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.10E-04
21GO:0008934: inositol monophosphate 1-phosphatase activity5.10E-04
22GO:0052833: inositol monophosphate 4-phosphatase activity5.10E-04
23GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.10E-04
24GO:0019156: isoamylase activity5.10E-04
25GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase5.10E-04
26GO:0004751: ribose-5-phosphate isomerase activity8.29E-04
27GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.29E-04
28GO:0070402: NADPH binding8.29E-04
29GO:0008864: formyltetrahydrofolate deformylase activity8.29E-04
30GO:0004373: glycogen (starch) synthase activity8.29E-04
31GO:0002161: aminoacyl-tRNA editing activity8.29E-04
32GO:0004148: dihydrolipoyl dehydrogenase activity8.29E-04
33GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.18E-03
34GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.18E-03
35GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.18E-03
36GO:0003999: adenine phosphoribosyltransferase activity1.18E-03
37GO:0016851: magnesium chelatase activity1.18E-03
38GO:0016149: translation release factor activity, codon specific1.18E-03
39GO:0003727: single-stranded RNA binding1.52E-03
40GO:0008891: glycolate oxidase activity1.57E-03
41GO:0016279: protein-lysine N-methyltransferase activity1.57E-03
42GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.57E-03
43GO:0004045: aminoacyl-tRNA hydrolase activity1.57E-03
44GO:0080032: methyl jasmonate esterase activity1.57E-03
45GO:0045430: chalcone isomerase activity1.57E-03
46GO:0043495: protein anchor1.57E-03
47GO:0016788: hydrolase activity, acting on ester bonds1.61E-03
48GO:0016846: carbon-sulfur lyase activity2.01E-03
49GO:0016773: phosphotransferase activity, alcohol group as acceptor2.01E-03
50GO:0080030: methyl indole-3-acetate esterase activity2.48E-03
51GO:0004556: alpha-amylase activity2.48E-03
52GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.97E-03
53GO:0008195: phosphatidate phosphatase activity2.97E-03
54GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.97E-03
55GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.97E-03
56GO:0005261: cation channel activity2.97E-03
57GO:0019899: enzyme binding3.50E-03
58GO:0016168: chlorophyll binding3.60E-03
59GO:0046914: transition metal ion binding4.65E-03
60GO:0003747: translation release factor activity5.27E-03
61GO:0003993: acid phosphatase activity5.88E-03
62GO:0016844: strictosidine synthase activity5.91E-03
63GO:0004185: serine-type carboxypeptidase activity7.25E-03
64GO:0008559: xenobiotic-transporting ATPase activity7.28E-03
65GO:0047372: acylglycerol lipase activity7.28E-03
66GO:0008378: galactosyltransferase activity8.00E-03
67GO:0003725: double-stranded RNA binding8.75E-03
68GO:0004022: alcohol dehydrogenase (NAD) activity8.75E-03
69GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.52E-03
70GO:0003774: motor activity9.52E-03
71GO:0008266: poly(U) RNA binding9.52E-03
72GO:0003824: catalytic activity9.66E-03
73GO:0003690: double-stranded DNA binding1.01E-02
74GO:0031409: pigment binding1.11E-02
75GO:0051536: iron-sulfur cluster binding1.20E-02
76GO:0005528: FK506 binding1.20E-02
77GO:0022891: substrate-specific transmembrane transporter activity1.56E-02
78GO:0047134: protein-disulfide reductase activity1.75E-02
79GO:0004812: aminoacyl-tRNA ligase activity1.75E-02
80GO:0009055: electron carrier activity1.85E-02
81GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.95E-02
82GO:0005525: GTP binding1.98E-02
83GO:0004791: thioredoxin-disulfide reductase activity2.05E-02
84GO:0010181: FMN binding2.05E-02
85GO:0008565: protein transporter activity2.10E-02
86GO:0048038: quinone binding2.27E-02
87GO:0003723: RNA binding2.37E-02
88GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.48E-02
89GO:0016597: amino acid binding2.83E-02
90GO:0016787: hydrolase activity3.02E-02
91GO:0042802: identical protein binding3.07E-02
92GO:0102483: scopolin beta-glucosidase activity3.31E-02
93GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.56E-02
94GO:0008168: methyltransferase activity3.60E-02
95GO:0015238: drug transmembrane transporter activity3.68E-02
96GO:0004601: peroxidase activity3.74E-02
97GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.94E-02
98GO:0016491: oxidoreductase activity4.02E-02
99GO:0050660: flavin adenine dinucleotide binding4.32E-02
100GO:0000149: SNARE binding4.48E-02
101GO:0008422: beta-glucosidase activity4.48E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0009507: chloroplast6.68E-24
3GO:0009535: chloroplast thylakoid membrane1.03E-12
4GO:0009570: chloroplast stroma1.83E-11
5GO:0009579: thylakoid4.51E-06
6GO:0005787: signal peptidase complex2.29E-04
7GO:0009344: nitrite reductase complex [NAD(P)H]2.29E-04
8GO:0009547: plastid ribosome2.29E-04
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.04E-04
10GO:0009543: chloroplast thylakoid lumen4.96E-04
11GO:0008290: F-actin capping protein complex5.10E-04
12GO:0010007: magnesium chelatase complex8.29E-04
13GO:0033281: TAT protein transport complex8.29E-04
14GO:0009534: chloroplast thylakoid8.62E-04
15GO:0031977: thylakoid lumen8.99E-04
16GO:0009941: chloroplast envelope1.03E-03
17GO:0009654: photosystem II oxygen evolving complex1.08E-03
18GO:0071782: endoplasmic reticulum tubular network1.18E-03
19GO:0042646: plastid nucleoid1.18E-03
20GO:0030658: transport vesicle membrane1.18E-03
21GO:0009517: PSII associated light-harvesting complex II1.57E-03
22GO:0009522: photosystem I2.06E-03
23GO:0031969: chloroplast membrane2.17E-03
24GO:0009523: photosystem II2.21E-03
25GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.48E-03
26GO:0009295: nucleoid3.04E-03
27GO:0012507: ER to Golgi transport vesicle membrane4.06E-03
28GO:0009501: amyloplast4.06E-03
29GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.06E-03
30GO:0009707: chloroplast outer membrane4.44E-03
31GO:0009539: photosystem II reaction center4.65E-03
32GO:0005763: mitochondrial small ribosomal subunit5.27E-03
33GO:0042644: chloroplast nucleoid5.27E-03
34GO:0016459: myosin complex6.58E-03
35GO:0000311: plastid large ribosomal subunit8.00E-03
36GO:0009508: plastid chromosome8.75E-03
37GO:0030095: chloroplast photosystem II9.52E-03
38GO:0030076: light-harvesting complex1.03E-02
39GO:0042651: thylakoid membrane1.28E-02
40GO:0009706: chloroplast inner membrane1.40E-02
41GO:0016021: integral component of membrane1.63E-02
42GO:0010287: plastoglobule1.66E-02
43GO:0005789: endoplasmic reticulum membrane1.71E-02
44GO:0019898: extrinsic component of membrane2.16E-02
45GO:0010319: stromule2.71E-02
46GO:0005840: ribosome2.89E-02
47GO:0030529: intracellular ribonucleoprotein complex2.94E-02
48GO:0046658: anchored component of plasma membrane3.20E-02
49GO:0000325: plant-type vacuole3.94E-02
50GO:0031201: SNARE complex4.76E-02
51GO:0031902: late endosome membrane4.76E-02
<
Gene type



Gene DE type