co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G60700

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000372: Group I intron splicing	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0032206: positive regulation of telomere maintenance	0.00E+00
5	GO:0070125: mitochondrial translational elongation	0.00E+00
6	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
7	GO:0000373: Group II intron splicing	1.66E-06
8	GO:0010239: chloroplast mRNA processing	9.21E-05
9	GO:0031365: N-terminal protein amino acid modification	2.42E-04
10	GO:0043489: RNA stabilization	5.43E-04
11	GO:0019478: D-amino acid catabolic process	5.43E-04
12	GO:0043686: co-translational protein modification	5.43E-04
13	GO:0043087: regulation of GTPase activity	5.43E-04
14	GO:0006436: tryptophanyl-tRNA aminoacylation	5.43E-04
15	GO:0000066: mitochondrial ornithine transport	5.43E-04
16	GO:0034757: negative regulation of iron ion transport	5.43E-04
17	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.43E-04
18	GO:0006353: DNA-templated transcription, termination	7.24E-04
19	GO:0009926: auxin polar transport	9.08E-04
20	GO:0010271: regulation of chlorophyll catabolic process	1.17E-03
21	GO:0001736: establishment of planar polarity	1.17E-03
22	GO:0010024: phytochromobilin biosynthetic process	1.17E-03
23	GO:0009451: RNA modification	1.39E-03
24	GO:0045037: protein import into chloroplast stroma	1.92E-03
25	GO:0010582: floral meristem determinacy	1.92E-03
26	GO:0051604: protein maturation	1.92E-03
27	GO:0030029: actin filament-based process	1.92E-03
28	GO:0045910: negative regulation of DNA recombination	1.92E-03
29	GO:0080117: secondary growth	1.92E-03
30	GO:2000904: regulation of starch metabolic process	2.78E-03
31	GO:0051513: regulation of monopolar cell growth	2.78E-03
32	GO:0009102: biotin biosynthetic process	2.78E-03
33	GO:0051639: actin filament network formation	2.78E-03
34	GO:0034059: response to anoxia	2.78E-03
35	GO:0044211: CTP salvage	2.78E-03
36	GO:0009800: cinnamic acid biosynthetic process	2.78E-03
37	GO:0010306: rhamnogalacturonan II biosynthetic process	2.78E-03
38	GO:0042989: sequestering of actin monomers	2.78E-03
39	GO:0051017: actin filament bundle assembly	3.42E-03
40	GO:0008295: spermidine biosynthetic process	3.75E-03
41	GO:0044206: UMP salvage	3.75E-03
42	GO:0006021: inositol biosynthetic process	3.75E-03
43	GO:0009956: radial pattern formation	3.75E-03
44	GO:0051781: positive regulation of cell division	3.75E-03
45	GO:0051764: actin crosslink formation	3.75E-03
46	GO:0015846: polyamine transport	3.75E-03
47	GO:0009734: auxin-activated signaling pathway	4.80E-03
48	GO:0030041: actin filament polymerization	4.81E-03
49	GO:0010236: plastoquinone biosynthetic process	4.81E-03
50	GO:0009107: lipoate biosynthetic process	4.81E-03
51	GO:0016123: xanthophyll biosynthetic process	4.81E-03
52	GO:0010158: abaxial cell fate specification	4.81E-03
53	GO:0080110: sporopollenin biosynthetic process	4.81E-03
54	GO:0009696: salicylic acid metabolic process	4.81E-03
55	GO:0009793: embryo development ending in seed dormancy	5.25E-03
56	GO:0016117: carotenoid biosynthetic process	5.87E-03
57	GO:0003006: developmental process involved in reproduction	5.96E-03
58	GO:0016554: cytidine to uridine editing	5.96E-03
59	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.96E-03
60	GO:0006559: L-phenylalanine catabolic process	5.96E-03
61	GO:0048831: regulation of shoot system development	5.96E-03
62	GO:0006206: pyrimidine nucleobase metabolic process	5.96E-03
63	GO:0048868: pollen tube development	6.85E-03
64	GO:0009958: positive gravitropism	6.85E-03
65	GO:1901259: chloroplast rRNA processing	7.20E-03
66	GO:0009942: longitudinal axis specification	7.20E-03
67	GO:0048509: regulation of meristem development	7.20E-03
68	GO:0010019: chloroplast-nucleus signaling pathway	7.20E-03
69	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	7.20E-03
70	GO:0009648: photoperiodism	7.20E-03
71	GO:0051510: regulation of unidimensional cell growth	8.52E-03
72	GO:0015693: magnesium ion transport	8.52E-03
73	GO:0009610: response to symbiotic fungus	8.52E-03
74	GO:0010050: vegetative phase change	8.52E-03
75	GO:0010098: suspensor development	8.52E-03
76	GO:0007264: small GTPase mediated signal transduction	9.06E-03
77	GO:0010583: response to cyclopentenone	9.06E-03
78	GO:0048316: seed development	9.47E-03
79	GO:0046620: regulation of organ growth	9.92E-03
80	GO:0009850: auxin metabolic process	9.92E-03
81	GO:0070413: trehalose metabolism in response to stress	9.92E-03
82	GO:0000105: histidine biosynthetic process	9.92E-03
83	GO:0009231: riboflavin biosynthetic process	9.92E-03
84	GO:0032544: plastid translation	1.14E-02
85	GO:0007389: pattern specification process	1.14E-02
86	GO:0071482: cellular response to light stimulus	1.14E-02
87	GO:0009827: plant-type cell wall modification	1.14E-02
88	GO:0007186: G-protein coupled receptor signaling pathway	1.14E-02
89	GO:0019430: removal of superoxide radicals	1.14E-02
90	GO:0009657: plastid organization	1.14E-02
91	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.30E-02
92	GO:0006098: pentose-phosphate shunt	1.30E-02
93	GO:0048507: meristem development	1.30E-02
94	GO:0008202: steroid metabolic process	1.46E-02
95	GO:0016573: histone acetylation	1.46E-02
96	GO:0006779: porphyrin-containing compound biosynthetic process	1.46E-02
97	GO:0000723: telomere maintenance	1.46E-02
98	GO:1900865: chloroplast RNA modification	1.46E-02
99	GO:0016571: histone methylation	1.46E-02
100	GO:0030244: cellulose biosynthetic process	1.61E-02
101	GO:0006535: cysteine biosynthetic process from serine	1.63E-02
102	GO:0048829: root cap development	1.63E-02
103	GO:0006298: mismatch repair	1.63E-02
104	GO:0010192: mucilage biosynthetic process	1.63E-02
105	GO:0006782: protoporphyrinogen IX biosynthetic process	1.63E-02
106	GO:0019538: protein metabolic process	1.63E-02
107	GO:0000160: phosphorelay signal transduction system	1.69E-02
108	GO:0009750: response to fructose	1.81E-02
109	GO:0016485: protein processing	1.81E-02
110	GO:0048765: root hair cell differentiation	1.81E-02
111	GO:0006790: sulfur compound metabolic process	1.99E-02
112	GO:0005983: starch catabolic process	1.99E-02
113	GO:0009691: cytokinin biosynthetic process	2.18E-02
114	GO:0006094: gluconeogenesis	2.18E-02
115	GO:0010540: basipetal auxin transport	2.37E-02
116	GO:0009266: response to temperature stimulus	2.37E-02
117	GO:0048467: gynoecium development	2.37E-02
118	GO:0010020: chloroplast fission	2.37E-02
119	GO:0010207: photosystem II assembly	2.37E-02
120	GO:0009933: meristem structural organization	2.37E-02
121	GO:0090351: seedling development	2.58E-02
122	GO:0046854: phosphatidylinositol phosphorylation	2.58E-02
123	GO:0009825: multidimensional cell growth	2.58E-02
124	GO:0080188: RNA-directed DNA methylation	2.58E-02
125	GO:0006863: purine nucleobase transport	2.78E-02
126	GO:0009833: plant-type primary cell wall biogenesis	2.78E-02
127	GO:0009636: response to toxic substance	2.97E-02
128	GO:0009965: leaf morphogenesis	2.97E-02
129	GO:0006289: nucleotide-excision repair	3.00E-02
130	GO:0005992: trehalose biosynthetic process	3.00E-02
131	GO:0019344: cysteine biosynthetic process	3.00E-02
132	GO:0030150: protein import into mitochondrial matrix	3.00E-02
133	GO:0006338: chromatin remodeling	3.00E-02
134	GO:0007010: cytoskeleton organization	3.00E-02
135	GO:0006418: tRNA aminoacylation for protein translation	3.22E-02
136	GO:0003333: amino acid transmembrane transport	3.44E-02
137	GO:0006306: DNA methylation	3.44E-02
138	GO:0009736: cytokinin-activated signaling pathway	3.56E-02
139	GO:0006364: rRNA processing	3.56E-02
140	GO:0035428: hexose transmembrane transport	3.67E-02
141	GO:0016226: iron-sulfur cluster assembly	3.67E-02
142	GO:0071215: cellular response to abscisic acid stimulus	3.90E-02
143	GO:0009686: gibberellin biosynthetic process	3.90E-02
144	GO:0010082: regulation of root meristem growth	3.90E-02
145	GO:0009658: chloroplast organization	3.98E-02
146	GO:0010584: pollen exine formation	4.14E-02
147	GO:0006284: base-excision repair	4.14E-02
148	GO:0070417: cellular response to cold	4.39E-02
149	GO:0008033: tRNA processing	4.63E-02
150	GO:0034220: ion transmembrane transport	4.63E-02
151	GO:0010087: phloem or xylem histogenesis	4.63E-02
152	GO:0010305: leaf vascular tissue pattern formation	4.89E-02
153	GO:0010182: sugar mediated signaling pathway	4.89E-02
154	GO:0046323: glucose import	4.89E-02
155	GO:0045489: pectin biosynthetic process	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
3	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
4	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
5	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
6	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
7	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
8	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
9	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
10	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
11	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
12	GO:0019808: polyamine binding	0.00E+00
13	GO:0008805: carbon-monoxide oxygenase activity	1.29E-05
14	GO:0003723: RNA binding	7.03E-05
15	GO:0001872: (1->3)-beta-D-glucan binding	9.21E-05
16	GO:0042586: peptide deformylase activity	5.43E-04
17	GO:0052381: tRNA dimethylallyltransferase activity	5.43E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.43E-04
19	GO:0004830: tryptophan-tRNA ligase activity	5.43E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.43E-04
21	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.43E-04
22	GO:0005227: calcium activated cation channel activity	5.43E-04
23	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.43E-04
24	GO:0005290: L-histidine transmembrane transporter activity	5.43E-04
25	GO:0043621: protein self-association	1.02E-03
26	GO:0019901: protein kinase binding	1.09E-03
27	GO:0050736: O-malonyltransferase activity	1.17E-03
28	GO:0009884: cytokinin receptor activity	1.17E-03
29	GO:0050017: L-3-cyanoalanine synthase activity	1.17E-03
30	GO:0017118: lipoyltransferase activity	1.17E-03
31	GO:0019903: protein phosphatase binding	1.17E-03
32	GO:0016415: octanoyltransferase activity	1.17E-03
33	GO:0004047: aminomethyltransferase activity	1.17E-03
34	GO:0004766: spermidine synthase activity	1.17E-03
35	GO:0052832: inositol monophosphate 3-phosphatase activity	1.17E-03
36	GO:0008934: inositol monophosphate 1-phosphatase activity	1.17E-03
37	GO:0052833: inositol monophosphate 4-phosphatase activity	1.17E-03
38	GO:0000064: L-ornithine transmembrane transporter activity	1.17E-03
39	GO:0019156: isoamylase activity	1.17E-03
40	GO:0005034: osmosensor activity	1.92E-03
41	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.92E-03
42	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.92E-03
43	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	1.92E-03
44	GO:0045548: phenylalanine ammonia-lyase activity	1.92E-03
45	GO:0003913: DNA photolyase activity	1.92E-03
46	GO:0004148: dihydrolipoyl dehydrogenase activity	1.92E-03
47	GO:0009982: pseudouridine synthase activity	2.18E-03
48	GO:0005525: GTP binding	2.52E-03
49	GO:0017172: cysteine dioxygenase activity	2.78E-03
50	GO:0080031: methyl salicylate esterase activity	2.78E-03
51	GO:0015189: L-lysine transmembrane transporter activity	2.78E-03
52	GO:0043047: single-stranded telomeric DNA binding	2.78E-03
53	GO:0015181: arginine transmembrane transporter activity	2.78E-03
54	GO:0005096: GTPase activator activity	2.84E-03
55	GO:0004519: endonuclease activity	2.88E-03
56	GO:0004845: uracil phosphoribosyltransferase activity	3.75E-03
57	GO:0010011: auxin binding	3.75E-03
58	GO:0010328: auxin influx transmembrane transporter activity	3.75E-03
59	GO:0070628: proteasome binding	3.75E-03
60	GO:0043424: protein histidine kinase binding	3.78E-03
61	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.47E-03
62	GO:0003785: actin monomer binding	4.81E-03
63	GO:0005471: ATP:ADP antiporter activity	4.81E-03
64	GO:0008725: DNA-3-methyladenine glycosylase activity	4.81E-03
65	GO:0030570: pectate lyase activity	4.97E-03
66	GO:0004784: superoxide dismutase activity	5.96E-03
67	GO:0030983: mismatched DNA binding	5.96E-03
68	GO:0080030: methyl indole-3-acetate esterase activity	5.96E-03
69	GO:0004332: fructose-bisphosphate aldolase activity	5.96E-03
70	GO:0004709: MAP kinase kinase kinase activity	5.96E-03
71	GO:0031593: polyubiquitin binding	5.96E-03
72	GO:0004556: alpha-amylase activity	5.96E-03
73	GO:0004656: procollagen-proline 4-dioxygenase activity	7.20E-03
74	GO:0019900: kinase binding	7.20E-03
75	GO:0004124: cysteine synthase activity	7.20E-03
76	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	7.20E-03
77	GO:0004849: uridine kinase activity	7.20E-03
78	GO:0003924: GTPase activity	8.36E-03
79	GO:0008235: metalloexopeptidase activity	8.52E-03
80	GO:0042162: telomeric DNA binding	8.52E-03
81	GO:0009881: photoreceptor activity	8.52E-03
82	GO:0019899: enzyme binding	8.52E-03
83	GO:0051015: actin filament binding	9.67E-03
84	GO:0043022: ribosome binding	9.92E-03
85	GO:0003684: damaged DNA binding	1.03E-02
86	GO:0008142: oxysterol binding	1.14E-02
87	GO:0030247: polysaccharide binding	1.45E-02
88	GO:0009672: auxin:proton symporter activity	1.46E-02
89	GO:0019843: rRNA binding	1.54E-02
90	GO:0004673: protein histidine kinase activity	1.63E-02
91	GO:0004805: trehalose-phosphatase activity	1.63E-02
92	GO:0008327: methyl-CpG binding	1.81E-02
93	GO:0004177: aminopeptidase activity	1.81E-02
94	GO:0004161: dimethylallyltranstransferase activity	1.81E-02
95	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.81E-02
96	GO:0050897: cobalt ion binding	1.87E-02
97	GO:0015095: magnesium ion transmembrane transporter activity	2.18E-02
98	GO:0000155: phosphorelay sensor kinase activity	2.18E-02
99	GO:0010329: auxin efflux transmembrane transporter activity	2.18E-02
100	GO:0015266: protein channel activity	2.18E-02
101	GO:0008266: poly(U) RNA binding	2.37E-02
102	GO:0008061: chitin binding	2.58E-02
103	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.78E-02
104	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.78E-02
105	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.78E-02
106	GO:0035091: phosphatidylinositol binding	2.86E-02
107	GO:0031418: L-ascorbic acid binding	3.00E-02
108	GO:0043130: ubiquitin binding	3.00E-02
109	GO:0008134: transcription factor binding	3.00E-02
110	GO:0016740: transferase activity	3.14E-02
111	GO:0051087: chaperone binding	3.22E-02
112	GO:0005345: purine nucleobase transmembrane transporter activity	3.22E-02
113	GO:0003964: RNA-directed DNA polymerase activity	3.44E-02
114	GO:0016760: cellulose synthase (UDP-forming) activity	3.90E-02
115	GO:0004812: aminoacyl-tRNA ligase activity	4.39E-02
116	GO:0008536: Ran GTPase binding	4.89E-02
117	GO:0003779: actin binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0009349: riboflavin synthase complex	0.00E+00
3	GO:0035452: extrinsic component of plastid membrane	0.00E+00
4	GO:0042597: periplasmic space	0.00E+00
5	GO:0009507: chloroplast	8.25E-14
6	GO:0009570: chloroplast stroma	2.46E-05
7	GO:0010370: perinucleolar chromocenter	5.43E-04
8	GO:0009941: chloroplast envelope	6.85E-04
9	GO:0005697: telomerase holoenzyme complex	1.17E-03
10	GO:0009569: chloroplast starch grain	1.17E-03
11	GO:0009513: etioplast	1.17E-03
12	GO:0030529: intracellular ribonucleoprotein complex	1.90E-03
13	GO:0009509: chromoplast	1.92E-03
14	GO:0009707: chloroplast outer membrane	2.67E-03
15	GO:0009531: secondary cell wall	2.78E-03
16	GO:0042646: plastid nucleoid	2.78E-03
17	GO:0032432: actin filament bundle	2.78E-03
18	GO:0009526: plastid envelope	3.75E-03
19	GO:0009532: plastid stroma	4.16E-03
20	GO:0031969: chloroplast membrane	4.22E-03
21	GO:0055035: plastid thylakoid membrane	4.81E-03
22	GO:0005759: mitochondrial matrix	4.92E-03
23	GO:0015629: actin cytoskeleton	4.97E-03
24	GO:0005856: cytoskeleton	5.81E-03
25	GO:0009986: cell surface	8.52E-03
26	GO:0042807: central vacuole	8.52E-03
27	GO:0031305: integral component of mitochondrial inner membrane	9.92E-03
28	GO:0009501: amyloplast	9.92E-03
29	GO:0000326: protein storage vacuole	1.14E-02
30	GO:0000784: nuclear chromosome, telomeric region	1.14E-02
31	GO:0005720: nuclear heterochromatin	1.30E-02
32	GO:0042644: chloroplast nucleoid	1.30E-02
33	GO:0005884: actin filament	1.81E-02
34	GO:0009574: preprophase band	2.18E-02
35	GO:0005938: cell cortex	2.18E-02
36	GO:0016602: CCAAT-binding factor complex	2.18E-02
37	GO:0005578: proteinaceous extracellular matrix	2.18E-02
38	GO:0030095: chloroplast photosystem II	2.37E-02
39	GO:0000419: DNA-directed RNA polymerase V complex	2.78E-02
40	GO:0009579: thylakoid	3.03E-02
41	GO:0009534: chloroplast thylakoid	3.09E-02
42	GO:0009654: photosystem II oxygen evolving complex	3.22E-02
43	GO:0046658: anchored component of plasma membrane	3.28E-02
44	GO:0005886: plasma membrane	3.81E-02
45	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.14E-02
46	GO:0009536: plastid	4.24E-02
47	GO:0005871: kinesin complex	4.39E-02
48	GO:0031225: anchored component of membrane	4.69E-02