GO Enrichment Analysis of Co-expressed Genes with
AT1G59930
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 2 | GO:0097275: cellular ammonia homeostasis | 0.00E+00 |
| 3 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 4 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 5 | GO:0051924: regulation of calcium ion transport | 0.00E+00 |
| 6 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 7 | GO:0009773: photosynthetic electron transport in photosystem I | 1.37E-05 |
| 8 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.60E-05 |
| 9 | GO:0010207: photosystem II assembly | 2.65E-05 |
| 10 | GO:0010190: cytochrome b6f complex assembly | 6.98E-05 |
| 11 | GO:1901259: chloroplast rRNA processing | 9.69E-05 |
| 12 | GO:0034337: RNA folding | 2.00E-04 |
| 13 | GO:0080112: seed growth | 2.00E-04 |
| 14 | GO:0000476: maturation of 4.5S rRNA | 2.00E-04 |
| 15 | GO:0000967: rRNA 5'-end processing | 2.00E-04 |
| 16 | GO:1905039: carboxylic acid transmembrane transport | 2.00E-04 |
| 17 | GO:1905200: gibberellic acid transmembrane transport | 2.00E-04 |
| 18 | GO:0032544: plastid translation | 2.04E-04 |
| 19 | GO:1901657: glycosyl compound metabolic process | 2.12E-04 |
| 20 | GO:0015995: chlorophyll biosynthetic process | 3.65E-04 |
| 21 | GO:0015979: photosynthesis | 3.89E-04 |
| 22 | GO:0034470: ncRNA processing | 4.48E-04 |
| 23 | GO:0080029: cellular response to boron-containing substance levels | 4.48E-04 |
| 24 | GO:0006898: receptor-mediated endocytosis | 4.48E-04 |
| 25 | GO:0006696: ergosterol biosynthetic process | 7.29E-04 |
| 26 | GO:0090391: granum assembly | 7.29E-04 |
| 27 | GO:0010114: response to red light | 7.78E-04 |
| 28 | GO:0046713: borate transport | 1.04E-03 |
| 29 | GO:1902358: sulfate transmembrane transport | 1.04E-03 |
| 30 | GO:0045338: farnesyl diphosphate metabolic process | 1.04E-03 |
| 31 | GO:0006166: purine ribonucleoside salvage | 1.04E-03 |
| 32 | GO:0006020: inositol metabolic process | 1.04E-03 |
| 33 | GO:0071484: cellular response to light intensity | 1.04E-03 |
| 34 | GO:0009152: purine ribonucleotide biosynthetic process | 1.04E-03 |
| 35 | GO:0046653: tetrahydrofolate metabolic process | 1.04E-03 |
| 36 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.04E-03 |
| 37 | GO:0006168: adenine salvage | 1.04E-03 |
| 38 | GO:0071786: endoplasmic reticulum tubular network organization | 1.04E-03 |
| 39 | GO:0055114: oxidation-reduction process | 1.09E-03 |
| 40 | GO:0009765: photosynthesis, light harvesting | 1.38E-03 |
| 41 | GO:0015994: chlorophyll metabolic process | 1.38E-03 |
| 42 | GO:0006021: inositol biosynthetic process | 1.38E-03 |
| 43 | GO:0071483: cellular response to blue light | 1.38E-03 |
| 44 | GO:0006564: L-serine biosynthetic process | 1.76E-03 |
| 45 | GO:0009904: chloroplast accumulation movement | 1.76E-03 |
| 46 | GO:0044209: AMP salvage | 1.76E-03 |
| 47 | GO:0006656: phosphatidylcholine biosynthetic process | 1.76E-03 |
| 48 | GO:0032502: developmental process | 2.08E-03 |
| 49 | GO:0009643: photosynthetic acclimation | 2.17E-03 |
| 50 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.17E-03 |
| 51 | GO:0042549: photosystem II stabilization | 2.17E-03 |
| 52 | GO:0046855: inositol phosphate dephosphorylation | 2.17E-03 |
| 53 | GO:1902456: regulation of stomatal opening | 2.17E-03 |
| 54 | GO:0009903: chloroplast avoidance movement | 2.60E-03 |
| 55 | GO:0071333: cellular response to glucose stimulus | 2.60E-03 |
| 56 | GO:0009955: adaxial/abaxial pattern specification | 2.60E-03 |
| 57 | GO:0016126: sterol biosynthetic process | 2.80E-03 |
| 58 | GO:0010196: nonphotochemical quenching | 3.06E-03 |
| 59 | GO:0008272: sulfate transport | 3.06E-03 |
| 60 | GO:0009769: photosynthesis, light harvesting in photosystem II | 3.06E-03 |
| 61 | GO:0009645: response to low light intensity stimulus | 3.06E-03 |
| 62 | GO:0006810: transport | 3.43E-03 |
| 63 | GO:0052543: callose deposition in cell wall | 3.55E-03 |
| 64 | GO:0009642: response to light intensity | 3.55E-03 |
| 65 | GO:0042255: ribosome assembly | 3.55E-03 |
| 66 | GO:0006353: DNA-templated transcription, termination | 3.55E-03 |
| 67 | GO:0015996: chlorophyll catabolic process | 4.06E-03 |
| 68 | GO:0009657: plastid organization | 4.06E-03 |
| 69 | GO:0006098: pentose-phosphate shunt | 4.60E-03 |
| 70 | GO:0009821: alkaloid biosynthetic process | 4.60E-03 |
| 71 | GO:0010206: photosystem II repair | 4.60E-03 |
| 72 | GO:0005982: starch metabolic process | 5.15E-03 |
| 73 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.15E-03 |
| 74 | GO:0009641: shade avoidance | 5.74E-03 |
| 75 | GO:0006782: protoporphyrinogen IX biosynthetic process | 5.74E-03 |
| 76 | GO:0015770: sucrose transport | 6.34E-03 |
| 77 | GO:0006415: translational termination | 6.34E-03 |
| 78 | GO:0043085: positive regulation of catalytic activity | 6.34E-03 |
| 79 | GO:0006790: sulfur compound metabolic process | 6.96E-03 |
| 80 | GO:0006094: gluconeogenesis | 7.61E-03 |
| 81 | GO:0030048: actin filament-based movement | 7.61E-03 |
| 82 | GO:0006364: rRNA processing | 8.01E-03 |
| 83 | GO:0010223: secondary shoot formation | 8.28E-03 |
| 84 | GO:0007015: actin filament organization | 8.28E-03 |
| 85 | GO:0046854: phosphatidylinositol phosphorylation | 8.97E-03 |
| 86 | GO:0009901: anther dehiscence | 8.97E-03 |
| 87 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.68E-03 |
| 88 | GO:0080147: root hair cell development | 1.04E-02 |
| 89 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.12E-02 |
| 90 | GO:0061077: chaperone-mediated protein folding | 1.19E-02 |
| 91 | GO:0009269: response to desiccation | 1.19E-02 |
| 92 | GO:0005975: carbohydrate metabolic process | 1.20E-02 |
| 93 | GO:0032259: methylation | 1.25E-02 |
| 94 | GO:0016226: iron-sulfur cluster assembly | 1.27E-02 |
| 95 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.27E-02 |
| 96 | GO:0071215: cellular response to abscisic acid stimulus | 1.35E-02 |
| 97 | GO:0009306: protein secretion | 1.43E-02 |
| 98 | GO:0009058: biosynthetic process | 1.51E-02 |
| 99 | GO:0016117: carotenoid biosynthetic process | 1.52E-02 |
| 100 | GO:0000413: protein peptidyl-prolyl isomerization | 1.60E-02 |
| 101 | GO:0006662: glycerol ether metabolic process | 1.69E-02 |
| 102 | GO:0009741: response to brassinosteroid | 1.69E-02 |
| 103 | GO:0019252: starch biosynthetic process | 1.87E-02 |
| 104 | GO:0009630: gravitropism | 2.06E-02 |
| 105 | GO:0010027: thylakoid membrane organization | 2.55E-02 |
| 106 | GO:0009658: chloroplast organization | 3.07E-02 |
| 107 | GO:0018298: protein-chromophore linkage | 3.09E-02 |
| 108 | GO:0009817: defense response to fungus, incompatible interaction | 3.09E-02 |
| 109 | GO:0009409: response to cold | 3.13E-02 |
| 110 | GO:0009813: flavonoid biosynthetic process | 3.20E-02 |
| 111 | GO:0010218: response to far red light | 3.31E-02 |
| 112 | GO:0009637: response to blue light | 3.65E-02 |
| 113 | GO:0009853: photorespiration | 3.65E-02 |
| 114 | GO:0034599: cellular response to oxidative stress | 3.77E-02 |
| 115 | GO:0080167: response to karrikin | 3.80E-02 |
| 116 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.93E-02 |
| 117 | GO:0000209: protein polyubiquitination | 4.50E-02 |
| 118 | GO:0045454: cell redox homeostasis | 4.54E-02 |
| 119 | GO:0009644: response to high light intensity | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 2 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 3 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 4 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 5 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 6 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 7 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 8 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 9 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 10 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 11 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.94E-05 |
| 12 | GO:0045486: naringenin 3-dioxygenase activity | 2.00E-04 |
| 13 | GO:0035671: enone reductase activity | 2.00E-04 |
| 14 | GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity | 2.00E-04 |
| 15 | GO:0080079: cellobiose glucosidase activity | 2.00E-04 |
| 16 | GO:1905201: gibberellin transmembrane transporter activity | 2.00E-04 |
| 17 | GO:0034256: chlorophyll(ide) b reductase activity | 2.00E-04 |
| 18 | GO:0015168: glycerol transmembrane transporter activity | 2.00E-04 |
| 19 | GO:0102483: scopolin beta-glucosidase activity | 3.65E-04 |
| 20 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 4.48E-04 |
| 21 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 4.48E-04 |
| 22 | GO:0047746: chlorophyllase activity | 4.48E-04 |
| 23 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.48E-04 |
| 24 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.48E-04 |
| 25 | GO:0033201: alpha-1,4-glucan synthase activity | 4.48E-04 |
| 26 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.48E-04 |
| 27 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.48E-04 |
| 28 | GO:0008422: beta-glucosidase activity | 6.32E-04 |
| 29 | GO:0004751: ribose-5-phosphate isomerase activity | 7.29E-04 |
| 30 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 7.29E-04 |
| 31 | GO:0008864: formyltetrahydrofolate deformylase activity | 7.29E-04 |
| 32 | GO:0004373: glycogen (starch) synthase activity | 7.29E-04 |
| 33 | GO:0046715: borate transmembrane transporter activity | 1.04E-03 |
| 34 | GO:0016851: magnesium chelatase activity | 1.04E-03 |
| 35 | GO:0003999: adenine phosphoribosyltransferase activity | 1.04E-03 |
| 36 | GO:0016149: translation release factor activity, codon specific | 1.04E-03 |
| 37 | GO:0022890: inorganic cation transmembrane transporter activity | 1.04E-03 |
| 38 | GO:0003727: single-stranded RNA binding | 1.26E-03 |
| 39 | GO:0015204: urea transmembrane transporter activity | 1.38E-03 |
| 40 | GO:0009011: starch synthase activity | 1.38E-03 |
| 41 | GO:0048038: quinone binding | 1.95E-03 |
| 42 | GO:0004332: fructose-bisphosphate aldolase activity | 2.17E-03 |
| 43 | GO:0019843: rRNA binding | 2.33E-03 |
| 44 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.60E-03 |
| 45 | GO:0016491: oxidoreductase activity | 2.77E-03 |
| 46 | GO:0008271: secondary active sulfate transmembrane transporter activity | 4.06E-03 |
| 47 | GO:0003747: translation release factor activity | 4.60E-03 |
| 48 | GO:0071949: FAD binding | 4.60E-03 |
| 49 | GO:0016844: strictosidine synthase activity | 5.15E-03 |
| 50 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 5.15E-03 |
| 51 | GO:0008047: enzyme activator activity | 5.74E-03 |
| 52 | GO:0008559: xenobiotic-transporting ATPase activity | 6.34E-03 |
| 53 | GO:0047372: acylglycerol lipase activity | 6.34E-03 |
| 54 | GO:0015386: potassium:proton antiporter activity | 6.34E-03 |
| 55 | GO:0008515: sucrose transmembrane transporter activity | 6.34E-03 |
| 56 | GO:0043621: protein self-association | 6.43E-03 |
| 57 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.93E-03 |
| 58 | GO:0015116: sulfate transmembrane transporter activity | 6.96E-03 |
| 59 | GO:0016787: hydrolase activity | 7.20E-03 |
| 60 | GO:0031072: heat shock protein binding | 7.61E-03 |
| 61 | GO:0003725: double-stranded RNA binding | 7.61E-03 |
| 62 | GO:0004022: alcohol dehydrogenase (NAD) activity | 7.61E-03 |
| 63 | GO:0003774: motor activity | 8.28E-03 |
| 64 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 8.28E-03 |
| 65 | GO:0051119: sugar transmembrane transporter activity | 8.97E-03 |
| 66 | GO:0031409: pigment binding | 9.68E-03 |
| 67 | GO:0051536: iron-sulfur cluster binding | 1.04E-02 |
| 68 | GO:0031418: L-ascorbic acid binding | 1.04E-02 |
| 69 | GO:0005528: FK506 binding | 1.04E-02 |
| 70 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.05E-02 |
| 71 | GO:0015079: potassium ion transmembrane transporter activity | 1.12E-02 |
| 72 | GO:0047134: protein-disulfide reductase activity | 1.52E-02 |
| 73 | GO:0004791: thioredoxin-disulfide reductase activity | 1.78E-02 |
| 74 | GO:0015299: solute:proton antiporter activity | 1.78E-02 |
| 75 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.16E-02 |
| 76 | GO:0016597: amino acid binding | 2.45E-02 |
| 77 | GO:0015250: water channel activity | 2.55E-02 |
| 78 | GO:0016168: chlorophyll binding | 2.66E-02 |
| 79 | GO:0008168: methyltransferase activity | 2.95E-02 |
| 80 | GO:0008236: serine-type peptidase activity | 2.98E-02 |
| 81 | GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding | 2.98E-02 |
| 82 | GO:0003746: translation elongation factor activity | 3.65E-02 |
| 83 | GO:0003993: acid phosphatase activity | 3.77E-02 |
| 84 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.77E-02 |
| 85 | GO:0015293: symporter activity | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009575: chromoplast stroma | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 5.42E-23 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 9.75E-16 |
| 4 | GO:0009534: chloroplast thylakoid | 4.74E-12 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 5.15E-09 |
| 6 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.96E-08 |
| 7 | GO:0009570: chloroplast stroma | 6.44E-08 |
| 8 | GO:0031977: thylakoid lumen | 1.34E-07 |
| 9 | GO:0009579: thylakoid | 1.86E-07 |
| 10 | GO:0009941: chloroplast envelope | 1.04E-05 |
| 11 | GO:0031969: chloroplast membrane | 3.04E-04 |
| 12 | GO:0010007: magnesium chelatase complex | 7.29E-04 |
| 13 | GO:0033281: TAT protein transport complex | 7.29E-04 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 8.95E-04 |
| 15 | GO:0042651: thylakoid membrane | 8.95E-04 |
| 16 | GO:0071782: endoplasmic reticulum tubular network | 1.04E-03 |
| 17 | GO:0009517: PSII associated light-harvesting complex II | 1.38E-03 |
| 18 | GO:0019898: extrinsic component of membrane | 1.82E-03 |
| 19 | GO:0010287: plastoglobule | 2.17E-03 |
| 20 | GO:0005623: cell | 2.41E-03 |
| 21 | GO:0009501: amyloplast | 3.55E-03 |
| 22 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 3.55E-03 |
| 23 | GO:0031982: vesicle | 3.55E-03 |
| 24 | GO:0005763: mitochondrial small ribosomal subunit | 4.60E-03 |
| 25 | GO:0016459: myosin complex | 5.74E-03 |
| 26 | GO:0032040: small-subunit processome | 6.96E-03 |
| 27 | GO:0009508: plastid chromosome | 7.61E-03 |
| 28 | GO:0030095: chloroplast photosystem II | 8.28E-03 |
| 29 | GO:0030076: light-harvesting complex | 8.97E-03 |
| 30 | GO:0015935: small ribosomal subunit | 1.19E-02 |
| 31 | GO:0009522: photosystem I | 1.78E-02 |
| 32 | GO:0009523: photosystem II | 1.87E-02 |
| 33 | GO:0005887: integral component of plasma membrane | 1.94E-02 |
| 34 | GO:0010319: stromule | 2.35E-02 |
| 35 | GO:0009295: nucleoid | 2.35E-02 |
| 36 | GO:0000325: plant-type vacuole | 3.42E-02 |