co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G58520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0042407: cristae formation	0.00E+00
7	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
8	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
9	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
10	GO:0048437: floral organ development	1.62E-04
11	GO:0043007: maintenance of rDNA	2.32E-04
12	GO:0000023: maltose metabolic process	2.32E-04
13	GO:0080112: seed growth	2.32E-04
14	GO:0005980: glycogen catabolic process	2.32E-04
15	GO:0030198: extracellular matrix organization	2.32E-04
16	GO:1905039: carboxylic acid transmembrane transport	2.32E-04
17	GO:1905200: gibberellic acid transmembrane transport	2.32E-04
18	GO:0010480: microsporocyte differentiation	2.32E-04
19	GO:0042371: vitamin K biosynthetic process	2.32E-04
20	GO:0043686: co-translational protein modification	2.32E-04
21	GO:0009773: photosynthetic electron transport in photosystem I	4.97E-04
22	GO:0006568: tryptophan metabolic process	5.15E-04
23	GO:0006423: cysteinyl-tRNA aminoacylation	5.15E-04
24	GO:0009629: response to gravity	5.15E-04
25	GO:0007154: cell communication	5.15E-04
26	GO:0018026: peptidyl-lysine monomethylation	5.15E-04
27	GO:0071497: cellular response to freezing	5.15E-04
28	GO:0090342: regulation of cell aging	5.15E-04
29	GO:0042325: regulation of phosphorylation	5.15E-04
30	GO:0033591: response to L-ascorbic acid	8.37E-04
31	GO:0019419: sulfate reduction	8.37E-04
32	GO:0006696: ergosterol biosynthetic process	8.37E-04
33	GO:0010321: regulation of vegetative phase change	1.19E-03
34	GO:0045338: farnesyl diphosphate metabolic process	1.19E-03
35	GO:0010601: positive regulation of auxin biosynthetic process	1.19E-03
36	GO:0006855: drug transmembrane transport	1.22E-03
37	GO:1901141: regulation of lignin biosynthetic process	1.59E-03
38	GO:0042274: ribosomal small subunit biogenesis	1.59E-03
39	GO:0022622: root system development	1.59E-03
40	GO:0006221: pyrimidine nucleotide biosynthetic process	1.59E-03
41	GO:0080022: primary root development	1.81E-03
42	GO:0009958: positive gravitropism	1.95E-03
43	GO:0006662: glycerol ether metabolic process	1.95E-03
44	GO:0010197: polar nucleus fusion	1.95E-03
45	GO:0031365: N-terminal protein amino acid modification	2.03E-03
46	GO:0032543: mitochondrial translation	2.03E-03
47	GO:0010236: plastoquinone biosynthetic process	2.03E-03
48	GO:0009416: response to light stimulus	2.45E-03
49	GO:0009959: negative gravitropism	2.50E-03
50	GO:0000741: karyogamy	2.50E-03
51	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.50E-03
52	GO:0009643: photosynthetic acclimation	2.50E-03
53	GO:1901657: glycosyl compound metabolic process	2.73E-03
54	GO:0045454: cell redox homeostasis	2.91E-03
55	GO:0010310: regulation of hydrogen peroxide metabolic process	3.00E-03
56	GO:2000033: regulation of seed dormancy process	3.00E-03
57	GO:0042372: phylloquinone biosynthetic process	3.00E-03
58	GO:0048280: vesicle fusion with Golgi apparatus	3.00E-03
59	GO:0032880: regulation of protein localization	3.54E-03
60	GO:0010161: red light signaling pathway	3.54E-03
61	GO:0009772: photosynthetic electron transport in photosystem II	3.54E-03
62	GO:0052543: callose deposition in cell wall	4.10E-03
63	GO:0046620: regulation of organ growth	4.10E-03
64	GO:0006353: DNA-templated transcription, termination	4.10E-03
65	GO:0010078: maintenance of root meristem identity	4.10E-03
66	GO:0043562: cellular response to nitrogen levels	4.70E-03
67	GO:0010099: regulation of photomorphogenesis	4.70E-03
68	GO:0009657: plastid organization	4.70E-03
69	GO:0010100: negative regulation of photomorphogenesis	4.70E-03
70	GO:0048527: lateral root development	5.21E-03
71	GO:0046685: response to arsenic-containing substance	5.32E-03
72	GO:0009821: alkaloid biosynthetic process	5.32E-03
73	GO:0010206: photosystem II repair	5.32E-03
74	GO:0006783: heme biosynthetic process	5.32E-03
75	GO:0009638: phototropism	5.97E-03
76	GO:0043067: regulation of programmed cell death	5.97E-03
77	GO:1900865: chloroplast RNA modification	5.97E-03
78	GO:0031425: chloroplast RNA processing	5.97E-03
79	GO:0034599: cellular response to oxidative stress	5.97E-03
80	GO:0010629: negative regulation of gene expression	6.65E-03
81	GO:0006896: Golgi to vacuole transport	6.65E-03
82	GO:0000103: sulfate assimilation	6.65E-03
83	GO:0009684: indoleacetic acid biosynthetic process	7.35E-03
84	GO:0010015: root morphogenesis	7.35E-03
85	GO:0000038: very long-chain fatty acid metabolic process	7.35E-03
86	GO:0009698: phenylpropanoid metabolic process	7.35E-03
87	GO:0015770: sucrose transport	7.35E-03
88	GO:0048229: gametophyte development	7.35E-03
89	GO:0006820: anion transport	8.08E-03
90	GO:0005983: starch catabolic process	8.08E-03
91	GO:0010075: regulation of meristem growth	8.84E-03
92	GO:0009767: photosynthetic electron transport chain	8.84E-03
93	GO:0010588: cotyledon vascular tissue pattern formation	8.84E-03
94	GO:2000012: regulation of auxin polar transport	8.84E-03
95	GO:0010102: lateral root morphogenesis	8.84E-03
96	GO:0010628: positive regulation of gene expression	8.84E-03
97	GO:0009266: response to temperature stimulus	9.62E-03
98	GO:0009934: regulation of meristem structural organization	9.62E-03
99	GO:0048467: gynoecium development	9.62E-03
100	GO:0006541: glutamine metabolic process	9.62E-03
101	GO:0009733: response to auxin	1.03E-02
102	GO:0009901: anther dehiscence	1.04E-02
103	GO:0019853: L-ascorbic acid biosynthetic process	1.04E-02
104	GO:0000162: tryptophan biosynthetic process	1.13E-02
105	GO:0048367: shoot system development	1.21E-02
106	GO:0019344: cysteine biosynthetic process	1.21E-02
107	GO:0010187: negative regulation of seed germination	1.21E-02
108	GO:0006418: tRNA aminoacylation for protein translation	1.30E-02
109	GO:0048278: vesicle docking	1.39E-02
110	GO:0031348: negative regulation of defense response	1.48E-02
111	GO:0006730: one-carbon metabolic process	1.48E-02
112	GO:0006012: galactose metabolic process	1.57E-02
113	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.57E-02
114	GO:0009686: gibberellin biosynthetic process	1.57E-02
115	GO:0016042: lipid catabolic process	1.67E-02
116	GO:0005975: carbohydrate metabolic process	1.73E-02
117	GO:0016117: carotenoid biosynthetic process	1.77E-02
118	GO:0042147: retrograde transport, endosome to Golgi	1.77E-02
119	GO:0008284: positive regulation of cell proliferation	1.77E-02
120	GO:0010087: phloem or xylem histogenesis	1.87E-02
121	GO:0048653: anther development	1.87E-02
122	GO:0042335: cuticle development	1.87E-02
123	GO:0008152: metabolic process	1.95E-02
124	GO:0009960: endosperm development	1.97E-02
125	GO:0061025: membrane fusion	2.07E-02
126	GO:0055114: oxidation-reduction process	2.08E-02
127	GO:0009556: microsporogenesis	2.18E-02
128	GO:0009851: auxin biosynthetic process	2.18E-02
129	GO:0006623: protein targeting to vacuole	2.18E-02
130	GO:0048825: cotyledon development	2.18E-02
131	GO:0006633: fatty acid biosynthetic process	2.23E-02
132	GO:0006891: intra-Golgi vesicle-mediated transport	2.29E-02
133	GO:0010583: response to cyclopentenone	2.40E-02
134	GO:0010252: auxin homeostasis	2.62E-02
135	GO:0009828: plant-type cell wall loosening	2.62E-02
136	GO:0009734: auxin-activated signaling pathway	2.66E-02
137	GO:0016126: sterol biosynthetic process	2.98E-02
138	GO:0009607: response to biotic stimulus	3.10E-02
139	GO:0010029: regulation of seed germination	3.10E-02
140	GO:0006906: vesicle fusion	3.22E-02
141	GO:0015995: chlorophyll biosynthetic process	3.34E-02
142	GO:0006888: ER to Golgi vesicle-mediated transport	3.34E-02
143	GO:0009555: pollen development	3.54E-02
144	GO:0035556: intracellular signal transduction	3.78E-02
145	GO:0009658: chloroplast organization	3.79E-02
146	GO:0006811: ion transport	3.85E-02
147	GO:0009631: cold acclimation	3.98E-02
148	GO:0009723: response to ethylene	4.38E-02
149	GO:0006887: exocytosis	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0097100: supercoiled DNA binding	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0005363: maltose transmembrane transporter activity	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0004823: leucine-tRNA ligase activity	0.00E+00
8	GO:0050139: nicotinate-N-glucosyltransferase activity	2.32E-04
9	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.32E-04
10	GO:1905201: gibberellin transmembrane transporter activity	2.32E-04
11	GO:0008184: glycogen phosphorylase activity	2.32E-04
12	GO:0042586: peptide deformylase activity	2.32E-04
13	GO:0010313: phytochrome binding	2.32E-04
14	GO:0004856: xylulokinase activity	2.32E-04
15	GO:0004645: phosphorylase activity	2.32E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.32E-04
17	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.83E-04
18	GO:0071949: FAD binding	3.09E-04
19	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.15E-04
20	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	5.15E-04
21	GO:0004817: cysteine-tRNA ligase activity	5.15E-04
22	GO:0009973: adenylyl-sulfate reductase activity	5.15E-04
23	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.15E-04
24	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	5.15E-04
25	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.15E-04
26	GO:0015238: drug transmembrane transporter activity	5.83E-04
27	GO:0004049: anthranilate synthase activity	8.37E-04
28	GO:0003913: DNA photolyase activity	8.37E-04
29	GO:0002161: aminoacyl-tRNA editing activity	8.37E-04
30	GO:0004148: dihydrolipoyl dehydrogenase activity	8.37E-04
31	GO:0009041: uridylate kinase activity	1.19E-03
32	GO:0022890: inorganic cation transmembrane transporter activity	1.19E-03
33	GO:0004659: prenyltransferase activity	1.59E-03
34	GO:0016279: protein-lysine N-methyltransferase activity	1.59E-03
35	GO:0016788: hydrolase activity, acting on ester bonds	1.64E-03
36	GO:0047134: protein-disulfide reductase activity	1.67E-03
37	GO:0016846: carbon-sulfur lyase activity	2.03E-03
38	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.03E-03
39	GO:0004791: thioredoxin-disulfide reductase activity	2.09E-03
40	GO:0080030: methyl indole-3-acetate esterase activity	2.50E-03
41	GO:0004629: phospholipase C activity	2.50E-03
42	GO:0035673: oligopeptide transmembrane transporter activity	2.50E-03
43	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.00E-03
44	GO:0004435: phosphatidylinositol phospholipase C activity	3.00E-03
45	GO:0004871: signal transducer activity	3.13E-03
46	GO:0004252: serine-type endopeptidase activity	3.48E-03
47	GO:0102483: scopolin beta-glucosidase activity	4.07E-03
48	GO:0004033: aldo-keto reductase (NADP) activity	4.10E-03
49	GO:0015297: antiporter activity	4.33E-03
50	GO:0016207: 4-coumarate-CoA ligase activity	5.32E-03
51	GO:0016844: strictosidine synthase activity	5.97E-03
52	GO:0008422: beta-glucosidase activity	6.23E-03
53	GO:0000149: SNARE binding	6.23E-03
54	GO:0008559: xenobiotic-transporting ATPase activity	7.35E-03
55	GO:0015386: potassium:proton antiporter activity	7.35E-03
56	GO:0008515: sucrose transmembrane transporter activity	7.35E-03
57	GO:0008327: methyl-CpG binding	7.35E-03
58	GO:0005484: SNAP receptor activity	7.36E-03
59	GO:0015198: oligopeptide transporter activity	8.08E-03
60	GO:0004089: carbonate dehydratase activity	8.84E-03
61	GO:0019888: protein phosphatase regulator activity	8.84E-03
62	GO:0003725: double-stranded RNA binding	8.84E-03
63	GO:0008083: growth factor activity	9.62E-03
64	GO:0051119: sugar transmembrane transporter activity	1.04E-02
65	GO:0004497: monooxygenase activity	1.05E-02
66	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.13E-02
67	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.13E-02
68	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.13E-02
69	GO:0005528: FK506 binding	1.21E-02
70	GO:0015079: potassium ion transmembrane transporter activity	1.30E-02
71	GO:0033612: receptor serine/threonine kinase binding	1.39E-02
72	GO:0015035: protein disulfide oxidoreductase activity	1.46E-02
73	GO:0003727: single-stranded RNA binding	1.67E-02
74	GO:0008514: organic anion transmembrane transporter activity	1.67E-02
75	GO:0004812: aminoacyl-tRNA ligase activity	1.77E-02
76	GO:0015299: solute:proton antiporter activity	2.07E-02
77	GO:0044212: transcription regulatory region DNA binding	2.75E-02
78	GO:0042802: identical protein binding	3.12E-02
79	GO:0008236: serine-type peptidase activity	3.47E-02
80	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.98E-02
81	GO:0016491: oxidoreductase activity	4.11E-02
82	GO:0050660: flavin adenine dinucleotide binding	4.38E-02
83	GO:0003993: acid phosphatase activity	4.39E-02
84	GO:0042393: histone binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.78E-11
2	GO:0009570: chloroplast stroma	1.65E-06
3	GO:0031969: chloroplast membrane	7.13E-05
4	GO:0009544: chloroplast ATP synthase complex	1.59E-03
5	GO:0009840: chloroplastic endopeptidase Clp complex	3.00E-03
6	GO:0009543: chloroplast thylakoid lumen	3.05E-03
7	GO:0009535: chloroplast thylakoid membrane	4.06E-03
8	GO:0012507: ER to Golgi transport vesicle membrane	4.10E-03
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.32E-03
10	GO:0031201: SNARE complex	6.78E-03
11	GO:0031902: late endosome membrane	6.78E-03
12	GO:0031977: thylakoid lumen	6.78E-03
13	GO:0000159: protein phosphatase type 2A complex	7.35E-03
14	GO:0009534: chloroplast thylakoid	1.27E-02
15	GO:0009654: photosystem II oxygen evolving complex	1.30E-02
16	GO:0009532: plastid stroma	1.39E-02
17	GO:0005770: late endosome	1.97E-02
18	GO:0019898: extrinsic component of membrane	2.18E-02
19	GO:0009295: nucleoid	2.74E-02
20	GO:0000325: plant-type vacuole	3.98E-02
21	GO:0009579: thylakoid	4.41E-02