co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G58080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071000: response to magnetism	0.00E+00
2	GO:0006114: glycerol biosynthetic process	0.00E+00
3	GO:0000372: Group I intron splicing	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:1905177: tracheary element differentiation	0.00E+00
6	GO:0006399: tRNA metabolic process	0.00E+00
7	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
8	GO:0009583: detection of light stimulus	0.00E+00
9	GO:1902025: nitrate import	1.35E-04
10	GO:0043266: regulation of potassium ion transport	1.35E-04
11	GO:0010080: regulation of floral meristem growth	1.35E-04
12	GO:0072387: flavin adenine dinucleotide metabolic process	1.35E-04
13	GO:0043087: regulation of GTPase activity	1.35E-04
14	GO:2000021: regulation of ion homeostasis	1.35E-04
15	GO:0043609: regulation of carbon utilization	1.35E-04
16	GO:0006436: tryptophanyl-tRNA aminoacylation	1.35E-04
17	GO:0090548: response to nitrate starvation	1.35E-04
18	GO:0000066: mitochondrial ornithine transport	1.35E-04
19	GO:0034757: negative regulation of iron ion transport	1.35E-04
20	GO:0006419: alanyl-tRNA aminoacylation	1.35E-04
21	GO:0010617: circadian regulation of calcium ion oscillation	3.11E-04
22	GO:0010271: regulation of chlorophyll catabolic process	3.11E-04
23	GO:1901959: positive regulation of cutin biosynthetic process	3.11E-04
24	GO:0099402: plant organ development	3.11E-04
25	GO:0001736: establishment of planar polarity	3.11E-04
26	GO:0010343: singlet oxygen-mediated programmed cell death	3.11E-04
27	GO:1901529: positive regulation of anion channel activity	3.11E-04
28	GO:0048255: mRNA stabilization	3.11E-04
29	GO:0010569: regulation of double-strand break repair via homologous recombination	3.11E-04
30	GO:0006435: threonyl-tRNA aminoacylation	3.11E-04
31	GO:1904278: positive regulation of wax biosynthetic process	5.13E-04
32	GO:0010623: programmed cell death involved in cell development	5.13E-04
33	GO:0080055: low-affinity nitrate transport	5.13E-04
34	GO:0006696: ergosterol biosynthetic process	5.13E-04
35	GO:1902448: positive regulation of shade avoidance	5.13E-04
36	GO:0006000: fructose metabolic process	5.13E-04
37	GO:0010022: meristem determinacy	5.13E-04
38	GO:0080117: secondary growth	5.13E-04
39	GO:1901672: positive regulation of systemic acquired resistance	5.13E-04
40	GO:1901332: negative regulation of lateral root development	7.34E-04
41	GO:2001141: regulation of RNA biosynthetic process	7.34E-04
42	GO:0051639: actin filament network formation	7.34E-04
43	GO:0034059: response to anoxia	7.34E-04
44	GO:1902347: response to strigolactone	9.73E-04
45	GO:0051764: actin crosslink formation	9.73E-04
46	GO:0051322: anaphase	9.73E-04
47	GO:0006661: phosphatidylinositol biosynthetic process	9.73E-04
48	GO:0045723: positive regulation of fatty acid biosynthetic process	9.73E-04
49	GO:0010508: positive regulation of autophagy	9.73E-04
50	GO:0008295: spermidine biosynthetic process	9.73E-04
51	GO:0010117: photoprotection	1.23E-03
52	GO:0046283: anthocyanin-containing compound metabolic process	1.23E-03
53	GO:1902183: regulation of shoot apical meristem development	1.23E-03
54	GO:0016123: xanthophyll biosynthetic process	1.23E-03
55	GO:0010158: abaxial cell fate specification	1.23E-03
56	GO:0080110: sporopollenin biosynthetic process	1.23E-03
57	GO:0048831: regulation of shoot system development	1.51E-03
58	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.51E-03
59	GO:1901371: regulation of leaf morphogenesis	1.51E-03
60	GO:0060918: auxin transport	1.51E-03
61	GO:0048509: regulation of meristem development	1.81E-03
62	GO:0010310: regulation of hydrogen peroxide metabolic process	1.81E-03
63	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.81E-03
64	GO:0006400: tRNA modification	2.12E-03
65	GO:0051510: regulation of unidimensional cell growth	2.12E-03
66	GO:0006955: immune response	2.12E-03
67	GO:0018298: protein-chromophore linkage	2.14E-03
68	GO:0006353: DNA-templated transcription, termination	2.46E-03
69	GO:0045010: actin nucleation	2.46E-03
70	GO:0048564: photosystem I assembly	2.46E-03
71	GO:0042255: ribosome assembly	2.46E-03
72	GO:0009637: response to blue light	2.70E-03
73	GO:0009932: cell tip growth	2.81E-03
74	GO:0006002: fructose 6-phosphate metabolic process	2.81E-03
75	GO:0071482: cellular response to light stimulus	2.81E-03
76	GO:0009657: plastid organization	2.81E-03
77	GO:0009793: embryo development ending in seed dormancy	2.84E-03
78	GO:0009658: chloroplast organization	3.06E-03
79	GO:0006839: mitochondrial transport	3.07E-03
80	GO:2000024: regulation of leaf development	3.17E-03
81	GO:0000373: Group II intron splicing	3.17E-03
82	GO:0009051: pentose-phosphate shunt, oxidative branch	3.17E-03
83	GO:0090305: nucleic acid phosphodiester bond hydrolysis	3.17E-03
84	GO:0010114: response to red light	3.47E-03
85	GO:1900426: positive regulation of defense response to bacterium	3.55E-03
86	GO:0009638: phototropism	3.55E-03
87	GO:0006535: cysteine biosynthetic process from serine	3.95E-03
88	GO:0048829: root cap development	3.95E-03
89	GO:0031627: telomeric loop formation	3.95E-03
90	GO:0009299: mRNA transcription	3.95E-03
91	GO:0006415: translational termination	4.36E-03
92	GO:1903507: negative regulation of nucleic acid-templated transcription	4.36E-03
93	GO:0006352: DNA-templated transcription, initiation	4.36E-03
94	GO:0048765: root hair cell differentiation	4.36E-03
95	GO:0010582: floral meristem determinacy	4.79E-03
96	GO:0045037: protein import into chloroplast stroma	4.79E-03
97	GO:0030036: actin cytoskeleton organization	5.22E-03
98	GO:0010075: regulation of meristem growth	5.22E-03
99	GO:0009725: response to hormone	5.22E-03
100	GO:0006094: gluconeogenesis	5.22E-03
101	GO:0009785: blue light signaling pathway	5.22E-03
102	GO:0009887: animal organ morphogenesis	5.68E-03
103	GO:0090351: seedling development	6.14E-03
104	GO:0010053: root epidermal cell differentiation	6.14E-03
105	GO:0080188: RNA-directed DNA methylation	6.14E-03
106	GO:0051017: actin filament bundle assembly	7.11E-03
107	GO:0006289: nucleotide-excision repair	7.11E-03
108	GO:2000377: regulation of reactive oxygen species metabolic process	7.11E-03
109	GO:0005992: trehalose biosynthetic process	7.11E-03
110	GO:0019344: cysteine biosynthetic process	7.11E-03
111	GO:0009944: polarity specification of adaxial/abaxial axis	7.11E-03
112	GO:0006418: tRNA aminoacylation for protein translation	7.62E-03
113	GO:0003333: amino acid transmembrane transport	8.14E-03
114	GO:0016998: cell wall macromolecule catabolic process	8.14E-03
115	GO:0006730: one-carbon metabolic process	8.67E-03
116	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.67E-03
117	GO:0071215: cellular response to abscisic acid stimulus	9.21E-03
118	GO:0010089: xylem development	9.77E-03
119	GO:0010584: pollen exine formation	9.77E-03
120	GO:0019722: calcium-mediated signaling	9.77E-03
121	GO:0016117: carotenoid biosynthetic process	1.03E-02
122	GO:0070417: cellular response to cold	1.03E-02
123	GO:0008033: tRNA processing	1.09E-02
124	GO:0010087: phloem or xylem histogenesis	1.09E-02
125	GO:0010118: stomatal movement	1.09E-02
126	GO:0010268: brassinosteroid homeostasis	1.15E-02
127	GO:0010154: fruit development	1.15E-02
128	GO:0009958: positive gravitropism	1.15E-02
129	GO:0009451: RNA modification	1.17E-02
130	GO:0042752: regulation of circadian rhythm	1.21E-02
131	GO:0009646: response to absence of light	1.21E-02
132	GO:0008654: phospholipid biosynthetic process	1.27E-02
133	GO:0016132: brassinosteroid biosynthetic process	1.34E-02
134	GO:0009416: response to light stimulus	1.36E-02
135	GO:0032502: developmental process	1.40E-02
136	GO:0010583: response to cyclopentenone	1.40E-02
137	GO:0010090: trichome morphogenesis	1.46E-02
138	GO:0016125: sterol metabolic process	1.53E-02
139	GO:0007267: cell-cell signaling	1.60E-02
140	GO:0000910: cytokinesis	1.66E-02
141	GO:0010029: regulation of seed germination	1.80E-02
142	GO:0010411: xyloglucan metabolic process	1.95E-02
143	GO:0016311: dephosphorylation	2.02E-02
144	GO:0009817: defense response to fungus, incompatible interaction	2.09E-02
145	GO:0048481: plant ovule development	2.09E-02
146	GO:0010311: lateral root formation	2.17E-02
147	GO:0000160: phosphorelay signal transduction system	2.17E-02
148	GO:0080167: response to karrikin	2.21E-02
149	GO:0010218: response to far red light	2.24E-02
150	GO:0006499: N-terminal protein myristoylation	2.24E-02
151	GO:0007568: aging	2.32E-02
152	GO:0006865: amino acid transport	2.40E-02
153	GO:0007275: multicellular organism development	2.43E-02
154	GO:0009853: photorespiration	2.48E-02
155	GO:0006631: fatty acid metabolic process	2.80E-02
156	GO:0009640: photomorphogenesis	2.97E-02
157	GO:0009926: auxin polar transport	2.97E-02
158	GO:0042546: cell wall biogenesis	3.05E-02
159	GO:0009644: response to high light intensity	3.14E-02
160	GO:0009636: response to toxic substance	3.23E-02
161	GO:0031347: regulation of defense response	3.40E-02
162	GO:0042538: hyperosmotic salinity response	3.49E-02
163	GO:0009736: cytokinin-activated signaling pathway	3.67E-02
164	GO:0051603: proteolysis involved in cellular protein catabolic process	3.76E-02
165	GO:0006857: oligopeptide transport	3.85E-02
166	GO:0009909: regulation of flower development	3.95E-02
167	GO:0048316: seed development	4.23E-02
168	GO:0009740: gibberellic acid mediated signaling pathway	4.52E-02
169	GO:0009624: response to nematode	4.71E-02
170	GO:0006396: RNA processing	4.81E-02
171	GO:0009742: brassinosteroid mediated signaling pathway	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
7	GO:0051996: squalene synthase activity	1.35E-04
8	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	1.35E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.35E-04
10	GO:0004830: tryptophan-tRNA ligase activity	1.35E-04
11	GO:0042834: peptidoglycan binding	1.35E-04
12	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.35E-04
13	GO:0004813: alanine-tRNA ligase activity	1.35E-04
14	GO:0005290: L-histidine transmembrane transporter activity	1.35E-04
15	GO:0005096: GTPase activator activity	2.18E-04
16	GO:0009884: cytokinin receptor activity	3.11E-04
17	GO:0004829: threonine-tRNA ligase activity	3.11E-04
18	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.11E-04
19	GO:0050017: L-3-cyanoalanine synthase activity	3.11E-04
20	GO:0005094: Rho GDP-dissociation inhibitor activity	3.11E-04
21	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.11E-04
22	GO:0043425: bHLH transcription factor binding	3.11E-04
23	GO:0004766: spermidine synthase activity	3.11E-04
24	GO:0000064: L-ornithine transmembrane transporter activity	3.11E-04
25	GO:0005034: osmosensor activity	5.13E-04
26	GO:0080054: low-affinity nitrate transmembrane transporter activity	5.13E-04
27	GO:0003913: DNA photolyase activity	5.13E-04
28	GO:0016149: translation release factor activity, codon specific	7.34E-04
29	GO:0009882: blue light photoreceptor activity	7.34E-04
30	GO:0004300: enoyl-CoA hydratase activity	7.34E-04
31	GO:0017057: 6-phosphogluconolactonase activity	7.34E-04
32	GO:0015189: L-lysine transmembrane transporter activity	7.34E-04
33	GO:0015181: arginine transmembrane transporter activity	7.34E-04
34	GO:0042277: peptide binding	9.73E-04
35	GO:0001053: plastid sigma factor activity	9.73E-04
36	GO:0010011: auxin binding	9.73E-04
37	GO:0016987: sigma factor activity	9.73E-04
38	GO:0010328: auxin influx transmembrane transporter activity	9.73E-04
39	GO:0070628: proteasome binding	9.73E-04
40	GO:0004518: nuclease activity	1.22E-03
41	GO:0005471: ATP:ADP antiporter activity	1.23E-03
42	GO:2001070: starch binding	1.51E-03
43	GO:0031593: polyubiquitin binding	1.51E-03
44	GO:0004656: procollagen-proline 4-dioxygenase activity	1.81E-03
45	GO:0019900: kinase binding	1.81E-03
46	GO:0004124: cysteine synthase activity	1.81E-03
47	GO:0009881: photoreceptor activity	2.12E-03
48	GO:0003747: translation release factor activity	3.17E-03
49	GO:0071949: FAD binding	3.17E-03
50	GO:0004673: protein histidine kinase activity	3.95E-03
51	GO:0004805: trehalose-phosphatase activity	3.95E-03
52	GO:0003691: double-stranded telomeric DNA binding	4.36E-03
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.60E-03
54	GO:0000976: transcription regulatory region sequence-specific DNA binding	4.79E-03
55	GO:0000049: tRNA binding	4.79E-03
56	GO:0008081: phosphoric diester hydrolase activity	5.22E-03
57	GO:0000155: phosphorelay sensor kinase activity	5.22E-03
58	GO:0003725: double-stranded RNA binding	5.22E-03
59	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.68E-03
60	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.62E-03
61	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.62E-03
62	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.62E-03
63	GO:0031418: L-ascorbic acid binding	7.11E-03
64	GO:0043130: ubiquitin binding	7.11E-03
65	GO:0003714: transcription corepressor activity	7.11E-03
66	GO:0043424: protein histidine kinase binding	7.62E-03
67	GO:0030570: pectate lyase activity	9.21E-03
68	GO:0003727: single-stranded RNA binding	9.77E-03
69	GO:0004812: aminoacyl-tRNA ligase activity	1.03E-02
70	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.07E-02
71	GO:0003723: RNA binding	1.13E-02
72	GO:0008536: Ran GTPase binding	1.15E-02
73	GO:0050662: coenzyme binding	1.21E-02
74	GO:0010181: FMN binding	1.21E-02
75	GO:0019901: protein kinase binding	1.27E-02
76	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.34E-02
77	GO:0051015: actin filament binding	1.46E-02
78	GO:0042802: identical protein binding	1.46E-02
79	GO:0005515: protein binding	1.49E-02
80	GO:0003684: damaged DNA binding	1.53E-02
81	GO:0016597: amino acid binding	1.66E-02
82	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.95E-02
83	GO:0004871: signal transducer activity	2.77E-02
84	GO:0004185: serine-type carboxypeptidase activity	2.97E-02
85	GO:0043621: protein self-association	3.14E-02
86	GO:0035091: phosphatidylinositol binding	3.14E-02
87	GO:0015293: symporter activity	3.23E-02
88	GO:0004519: endonuclease activity	3.54E-02
89	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.67E-02
90	GO:0003690: double-stranded DNA binding	3.76E-02
91	GO:0015171: amino acid transmembrane transporter activity	3.95E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.57E-05
2	GO:0009574: preprophase band	3.08E-04
3	GO:0016605: PML body	5.13E-04
4	GO:0032432: actin filament bundle	7.34E-04
5	GO:0031209: SCAR complex	1.51E-03
6	GO:0005655: nucleolar ribonuclease P complex	1.81E-03
7	GO:0009986: cell surface	2.12E-03
8	GO:0046658: anchored component of plasma membrane	2.51E-03
9	GO:0000783: nuclear telomere cap complex	2.81E-03
10	GO:0016604: nuclear body	3.55E-03
11	GO:0005884: actin filament	4.36E-03
12	GO:0005578: proteinaceous extracellular matrix	5.22E-03
13	GO:0031225: anchored component of membrane	5.93E-03
14	GO:0042651: thylakoid membrane	7.62E-03
15	GO:0009532: plastid stroma	8.14E-03
16	GO:0030529: intracellular ribonucleoprotein complex	1.73E-02
17	GO:0031969: chloroplast membrane	2.21E-02
18	GO:0005886: plasma membrane	2.42E-02
19	GO:0005768: endosome	2.90E-02
20	GO:0009535: chloroplast thylakoid membrane	2.94E-02
21	GO:0005743: mitochondrial inner membrane	3.03E-02
22	GO:0005856: cytoskeleton	3.23E-02
23	GO:0009536: plastid	4.25E-02
24	GO:0009505: plant-type cell wall	4.37E-02
25	GO:0009706: chloroplast inner membrane	4.71E-02