co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G57980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:1905177: tracheary element differentiation	0.00E+00
4	GO:0006399: tRNA metabolic process	0.00E+00
5	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
6	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0016556: mRNA modification	2.89E-05
9	GO:2001141: regulation of RNA biosynthetic process	2.89E-05
10	GO:0009828: plant-type cell wall loosening	3.34E-05
11	GO:0010207: photosystem II assembly	5.66E-05
12	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.63E-04
13	GO:0046620: regulation of organ growth	2.73E-04
14	GO:0009664: plant-type cell wall organization	2.78E-04
15	GO:0051775: response to redox state	2.80E-04
16	GO:0070509: calcium ion import	2.80E-04
17	GO:1904966: positive regulation of vitamin E biosynthetic process	2.80E-04
18	GO:0043266: regulation of potassium ion transport	2.80E-04
19	GO:0010480: microsporocyte differentiation	2.80E-04
20	GO:0010080: regulation of floral meristem growth	2.80E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	2.80E-04
22	GO:0042371: vitamin K biosynthetic process	2.80E-04
23	GO:2000021: regulation of ion homeostasis	2.80E-04
24	GO:0051247: positive regulation of protein metabolic process	2.80E-04
25	GO:1902458: positive regulation of stomatal opening	2.80E-04
26	GO:0015904: tetracycline transport	2.80E-04
27	GO:2000905: negative regulation of starch metabolic process	2.80E-04
28	GO:0000305: response to oxygen radical	2.80E-04
29	GO:0006419: alanyl-tRNA aminoacylation	2.80E-04
30	GO:0071482: cellular response to light stimulus	3.35E-04
31	GO:0009826: unidimensional cell growth	4.66E-04
32	GO:1900865: chloroplast RNA modification	4.79E-04
33	GO:0009658: chloroplast organization	5.00E-04
34	GO:0060359: response to ammonium ion	6.14E-04
35	GO:0048255: mRNA stabilization	6.14E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	6.14E-04
37	GO:1901959: positive regulation of cutin biosynthetic process	6.14E-04
38	GO:0080009: mRNA methylation	6.14E-04
39	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.14E-04
40	GO:0006352: DNA-templated transcription, initiation	6.45E-04
41	GO:0010022: meristem determinacy	9.96E-04
42	GO:0048586: regulation of long-day photoperiodism, flowering	9.96E-04
43	GO:1904278: positive regulation of wax biosynthetic process	9.96E-04
44	GO:0010623: programmed cell death involved in cell development	9.96E-04
45	GO:0043157: response to cation stress	9.96E-04
46	GO:1902448: positive regulation of shade avoidance	9.96E-04
47	GO:0070588: calcium ion transmembrane transport	1.05E-03
48	GO:0040008: regulation of growth	1.16E-03
49	GO:0043572: plastid fission	1.42E-03
50	GO:0090308: regulation of methylation-dependent chromatin silencing	1.42E-03
51	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.42E-03
52	GO:0051513: regulation of monopolar cell growth	1.42E-03
53	GO:0007231: osmosensory signaling pathway	1.42E-03
54	GO:0006107: oxaloacetate metabolic process	1.42E-03
55	GO:0045723: positive regulation of fatty acid biosynthetic process	1.91E-03
56	GO:0010508: positive regulation of autophagy	1.91E-03
57	GO:0033500: carbohydrate homeostasis	1.91E-03
58	GO:0006749: glutathione metabolic process	1.91E-03
59	GO:0006734: NADH metabolic process	1.91E-03
60	GO:0010109: regulation of photosynthesis	1.91E-03
61	GO:0009765: photosynthesis, light harvesting	1.91E-03
62	GO:2000306: positive regulation of photomorphogenesis	1.91E-03
63	GO:0006109: regulation of carbohydrate metabolic process	1.91E-03
64	GO:0022622: root system development	1.91E-03
65	GO:0080022: primary root development	2.36E-03
66	GO:0010236: plastoquinone biosynthetic process	2.43E-03
67	GO:0045038: protein import into chloroplast thylakoid membrane	2.43E-03
68	GO:0016123: xanthophyll biosynthetic process	2.43E-03
69	GO:0010182: sugar mediated signaling pathway	2.54E-03
70	GO:0016554: cytidine to uridine editing	3.00E-03
71	GO:0032973: amino acid export	3.00E-03
72	GO:0006655: phosphatidylglycerol biosynthetic process	3.00E-03
73	GO:0000741: karyogamy	3.00E-03
74	GO:0009959: negative gravitropism	3.00E-03
75	GO:0005975: carbohydrate metabolic process	3.17E-03
76	GO:0010583: response to cyclopentenone	3.35E-03
77	GO:0032502: developmental process	3.35E-03
78	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.54E-03
79	GO:0042372: phylloquinone biosynthetic process	3.62E-03
80	GO:2000033: regulation of seed dormancy process	3.62E-03
81	GO:0017148: negative regulation of translation	3.62E-03
82	GO:0010189: vitamin E biosynthetic process	3.62E-03
83	GO:0080086: stamen filament development	3.62E-03
84	GO:0048437: floral organ development	4.26E-03
85	GO:0010444: guard mother cell differentiation	4.26E-03
86	GO:0006400: tRNA modification	4.26E-03
87	GO:0032880: regulation of protein localization	4.26E-03
88	GO:0048528: post-embryonic root development	4.26E-03
89	GO:0009772: photosynthetic electron transport in photosystem II	4.26E-03
90	GO:0043090: amino acid import	4.26E-03
91	GO:0010027: thylakoid membrane organization	4.53E-03
92	GO:0009690: cytokinin metabolic process	4.95E-03
93	GO:0006605: protein targeting	4.95E-03
94	GO:2000070: regulation of response to water deprivation	4.95E-03
95	GO:0048564: photosystem I assembly	4.95E-03
96	GO:0015995: chlorophyll biosynthetic process	5.33E-03
97	GO:0007275: multicellular organism development	5.56E-03
98	GO:0007186: G-protein coupled receptor signaling pathway	5.67E-03
99	GO:0009657: plastid organization	5.67E-03
100	GO:0015996: chlorophyll catabolic process	5.67E-03
101	GO:0018298: protein-chromophore linkage	5.91E-03
102	GO:0080144: amino acid homeostasis	6.43E-03
103	GO:0000373: Group II intron splicing	6.43E-03
104	GO:0031425: chloroplast RNA processing	7.22E-03
105	GO:0009638: phototropism	7.22E-03
106	GO:0006779: porphyrin-containing compound biosynthetic process	7.22E-03
107	GO:0006782: protoporphyrinogen IX biosynthetic process	8.04E-03
108	GO:0009299: mRNA transcription	8.04E-03
109	GO:0009641: shade avoidance	8.04E-03
110	GO:0006949: syncytium formation	8.04E-03
111	GO:0031627: telomeric loop formation	8.04E-03
112	GO:0010162: seed dormancy process	8.04E-03
113	GO:0009773: photosynthetic electron transport in photosystem I	8.90E-03
114	GO:0006415: translational termination	8.90E-03
115	GO:0009073: aromatic amino acid family biosynthetic process	8.90E-03
116	GO:0043085: positive regulation of catalytic activity	8.90E-03
117	GO:0048229: gametophyte development	8.90E-03
118	GO:0010216: maintenance of DNA methylation	8.90E-03
119	GO:0006816: calcium ion transport	8.90E-03
120	GO:0009926: auxin polar transport	9.67E-03
121	GO:0016024: CDP-diacylglycerol biosynthetic process	9.79E-03
122	GO:0045037: protein import into chloroplast stroma	9.79E-03
123	GO:0010582: floral meristem determinacy	9.79E-03
124	GO:0009734: auxin-activated signaling pathway	1.02E-02
125	GO:2000012: regulation of auxin polar transport	1.07E-02
126	GO:0030048: actin filament-based movement	1.07E-02
127	GO:0010628: positive regulation of gene expression	1.07E-02
128	GO:0006108: malate metabolic process	1.07E-02
129	GO:0050826: response to freezing	1.07E-02
130	GO:0010075: regulation of meristem growth	1.07E-02
131	GO:0009725: response to hormone	1.07E-02
132	GO:0010588: cotyledon vascular tissue pattern formation	1.07E-02
133	GO:0010020: chloroplast fission	1.17E-02
134	GO:0009887: animal organ morphogenesis	1.17E-02
135	GO:0009934: regulation of meristem structural organization	1.17E-02
136	GO:0019853: L-ascorbic acid biosynthetic process	1.26E-02
137	GO:0010030: positive regulation of seed germination	1.26E-02
138	GO:0006071: glycerol metabolic process	1.37E-02
139	GO:0051017: actin filament bundle assembly	1.47E-02
140	GO:0009733: response to auxin	1.65E-02
141	GO:0010431: seed maturation	1.68E-02
142	GO:0009740: gibberellic acid mediated signaling pathway	1.76E-02
143	GO:0015979: photosynthesis	1.76E-02
144	GO:0030245: cellulose catabolic process	1.80E-02
145	GO:0006012: galactose metabolic process	1.91E-02
146	GO:0009742: brassinosteroid mediated signaling pathway	1.98E-02
147	GO:0019722: calcium-mediated signaling	2.03E-02
148	GO:0010089: xylem development	2.03E-02
149	GO:0008284: positive regulation of cell proliferation	2.15E-02
150	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.15E-02
151	GO:0010087: phloem or xylem histogenesis	2.27E-02
152	GO:0048653: anther development	2.27E-02
153	GO:0042631: cellular response to water deprivation	2.27E-02
154	GO:0009958: positive gravitropism	2.39E-02
155	GO:0010305: leaf vascular tissue pattern formation	2.39E-02
156	GO:0006662: glycerol ether metabolic process	2.39E-02
157	GO:0010197: polar nucleus fusion	2.39E-02
158	GO:0006629: lipid metabolic process	2.44E-02
159	GO:0009646: response to absence of light	2.52E-02
160	GO:0008654: phospholipid biosynthetic process	2.65E-02
161	GO:0016032: viral process	2.91E-02
162	GO:0009630: gravitropism	2.91E-02
163	GO:0010090: trichome morphogenesis	3.05E-02
164	GO:0007267: cell-cell signaling	3.33E-02
165	GO:0010029: regulation of seed germination	3.76E-02
166	GO:0006499: N-terminal protein myristoylation	4.68E-02
167	GO:0009407: toxin catabolic process	4.68E-02
168	GO:0048527: lateral root development	4.84E-02
169	GO:0009416: response to light stimulus	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0010276: phytol kinase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
5	GO:0001053: plastid sigma factor activity	5.21E-05
6	GO:0016987: sigma factor activity	5.21E-05
7	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.80E-04
8	GO:0004813: alanine-tRNA ligase activity	2.80E-04
9	GO:0008746: NAD(P)+ transhydrogenase activity	2.80E-04
10	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.80E-04
11	GO:0050139: nicotinate-N-glucosyltransferase activity	2.80E-04
12	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.80E-04
13	GO:0008493: tetracycline transporter activity	6.14E-04
14	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	6.14E-04
15	GO:0004362: glutathione-disulfide reductase activity	6.14E-04
16	GO:0043425: bHLH transcription factor binding	6.14E-04
17	GO:0005262: calcium channel activity	8.37E-04
18	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.39E-04
19	GO:0003913: DNA photolyase activity	9.96E-04
20	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.96E-04
21	GO:0005528: FK506 binding	1.29E-03
22	GO:0016851: magnesium chelatase activity	1.42E-03
23	GO:0016149: translation release factor activity, codon specific	1.42E-03
24	GO:0043023: ribosomal large subunit binding	1.42E-03
25	GO:0001872: (1->3)-beta-D-glucan binding	1.42E-03
26	GO:0043495: protein anchor	1.91E-03
27	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.91E-03
28	GO:0004659: prenyltransferase activity	1.91E-03
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.91E-03
30	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.43E-03
31	GO:0004462: lactoylglutathione lyase activity	3.00E-03
32	GO:0016615: malate dehydrogenase activity	3.00E-03
33	GO:0004605: phosphatidate cytidylyltransferase activity	3.00E-03
34	GO:0030060: L-malate dehydrogenase activity	3.62E-03
35	GO:0009881: photoreceptor activity	4.26E-03
36	GO:0019899: enzyme binding	4.26E-03
37	GO:0016597: amino acid binding	4.28E-03
38	GO:0004033: aldo-keto reductase (NADP) activity	4.95E-03
39	GO:0008889: glycerophosphodiester phosphodiesterase activity	6.43E-03
40	GO:0003747: translation release factor activity	6.43E-03
41	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	6.45E-03
42	GO:0004222: metalloendopeptidase activity	6.51E-03
43	GO:0004519: endonuclease activity	6.90E-03
44	GO:0030955: potassium ion binding	7.22E-03
45	GO:0004743: pyruvate kinase activity	7.22E-03
46	GO:0008047: enzyme activator activity	8.04E-03
47	GO:0015020: glucuronosyltransferase activity	8.04E-03
48	GO:0003691: double-stranded telomeric DNA binding	8.90E-03
49	GO:0000049: tRNA binding	9.79E-03
50	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.79E-03
51	GO:0031072: heat shock protein binding	1.07E-02
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.13E-02
53	GO:0008083: growth factor activity	1.17E-02
54	GO:0008266: poly(U) RNA binding	1.17E-02
55	GO:0003774: motor activity	1.17E-02
56	GO:0008146: sulfotransferase activity	1.26E-02
57	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.31E-02
58	GO:0004857: enzyme inhibitor activity	1.47E-02
59	GO:0004176: ATP-dependent peptidase activity	1.68E-02
60	GO:0033612: receptor serine/threonine kinase binding	1.68E-02
61	GO:0052689: carboxylic ester hydrolase activity	1.69E-02
62	GO:0030570: pectate lyase activity	1.91E-02
63	GO:0008810: cellulase activity	1.91E-02
64	GO:0022891: substrate-specific transmembrane transporter activity	1.91E-02
65	GO:0004871: signal transducer activity	1.99E-02
66	GO:0047134: protein-disulfide reductase activity	2.15E-02
67	GO:0046983: protein dimerization activity	2.22E-02
68	GO:0004791: thioredoxin-disulfide reductase activity	2.52E-02
69	GO:0016829: lyase activity	2.53E-02
70	GO:0048038: quinone binding	2.78E-02
71	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.01E-02
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.05E-02
73	GO:0051015: actin filament binding	3.05E-02
74	GO:0008483: transaminase activity	3.33E-02
75	GO:0008237: metallopeptidase activity	3.33E-02
76	GO:0005200: structural constituent of cytoskeleton	3.33E-02
77	GO:0016168: chlorophyll binding	3.76E-02
78	GO:0008375: acetylglucosaminyltransferase activity	3.91E-02
79	GO:0030247: polysaccharide binding	4.06E-02
80	GO:0004721: phosphoprotein phosphatase activity	4.06E-02
81	GO:0015238: drug transmembrane transporter activity	4.52E-02
82	GO:0000287: magnesium ion binding	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.20E-09
2	GO:0009570: chloroplast stroma	8.99E-06
3	GO:0010319: stromule	4.74E-04
4	GO:0031969: chloroplast membrane	7.33E-04
5	GO:0009535: chloroplast thylakoid membrane	8.83E-04
6	GO:0009941: chloroplast envelope	8.83E-04
7	GO:0010007: magnesium chelatase complex	9.96E-04
8	GO:0009528: plastid inner membrane	9.96E-04
9	GO:0015629: actin cytoskeleton	1.86E-03
10	GO:0046658: anchored component of plasma membrane	1.91E-03
11	GO:0009527: plastid outer membrane	1.91E-03
12	GO:0031225: anchored component of membrane	2.52E-03
13	GO:0000783: nuclear telomere cap complex	5.67E-03
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.43E-03
15	GO:0005720: nuclear heterochromatin	6.43E-03
16	GO:0016459: myosin complex	8.04E-03
17	GO:0005578: proteinaceous extracellular matrix	1.07E-02
18	GO:0042651: thylakoid membrane	1.58E-02
19	GO:0009532: plastid stroma	1.68E-02
20	GO:0005886: plasma membrane	1.71E-02
21	GO:0009579: thylakoid	1.89E-02
22	GO:0009534: chloroplast thylakoid	1.92E-02
23	GO:0009505: plant-type cell wall	1.99E-02
24	GO:0009543: chloroplast thylakoid lumen	2.34E-02
25	GO:0009523: photosystem II	2.65E-02
26	GO:0009705: plant-type vacuole membrane	3.22E-02
27	GO:0030529: intracellular ribonucleoprotein complex	3.62E-02
28	GO:0009707: chloroplast outer membrane	4.37E-02
29	GO:0016020: membrane	4.52E-02