Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1902289: negative regulation of defense response to oomycetes0.00E+00
2GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
3GO:0005993: trehalose catabolic process0.00E+00
4GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
5GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
6GO:0052386: cell wall thickening0.00E+00
7GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress0.00E+00
8GO:0010401: pectic galactan metabolic process0.00E+00
9GO:0009312: oligosaccharide biosynthetic process0.00E+00
10GO:0046865: terpenoid transport0.00E+00
11GO:0006983: ER overload response0.00E+00
12GO:1902009: positive regulation of toxin transport0.00E+00
13GO:0051553: flavone biosynthetic process0.00E+00
14GO:2000068: regulation of defense response to insect0.00E+00
15GO:0010055: atrichoblast differentiation0.00E+00
16GO:0006654: phosphatidic acid biosynthetic process0.00E+00
17GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
18GO:0015012: heparan sulfate proteoglycan biosynthetic process6.00E-06
19GO:0006024: glycosaminoglycan biosynthetic process6.00E-06
20GO:0009738: abscisic acid-activated signaling pathway1.47E-04
21GO:0009751: response to salicylic acid1.60E-04
22GO:0009759: indole glucosinolate biosynthetic process1.84E-04
23GO:0010200: response to chitin3.58E-04
24GO:0043547: positive regulation of GTPase activity3.65E-04
25GO:1990641: response to iron ion starvation3.65E-04
26GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.65E-04
27GO:0051090: regulation of sequence-specific DNA binding transcription factor activity3.65E-04
28GO:0050691: regulation of defense response to virus by host3.65E-04
29GO:0009968: negative regulation of signal transduction3.65E-04
30GO:0032107: regulation of response to nutrient levels3.65E-04
31GO:0034975: protein folding in endoplasmic reticulum3.65E-04
32GO:0016337: single organismal cell-cell adhesion3.65E-04
33GO:0000077: DNA damage checkpoint3.65E-04
34GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.05E-04
35GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.02E-04
36GO:0008202: steroid metabolic process7.02E-04
37GO:0009737: response to abscisic acid7.89E-04
38GO:0052541: plant-type cell wall cellulose metabolic process7.94E-04
39GO:0040020: regulation of meiotic nuclear division7.94E-04
40GO:0006101: citrate metabolic process7.94E-04
41GO:0043066: negative regulation of apoptotic process7.94E-04
42GO:0080183: response to photooxidative stress7.94E-04
43GO:0010155: regulation of proton transport7.94E-04
44GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.94E-04
45GO:0006568: tryptophan metabolic process7.94E-04
46GO:0000266: mitochondrial fission1.07E-03
47GO:0015692: lead ion transport1.29E-03
48GO:0052546: cell wall pectin metabolic process1.29E-03
49GO:0080168: abscisic acid transport1.29E-03
50GO:0080163: regulation of protein serine/threonine phosphatase activity1.29E-03
51GO:0071398: cellular response to fatty acid1.29E-03
52GO:0006065: UDP-glucuronate biosynthetic process1.29E-03
53GO:0015783: GDP-fucose transport1.29E-03
54GO:0032504: multicellular organism reproduction1.29E-03
55GO:0009410: response to xenobiotic stimulus1.29E-03
56GO:0002237: response to molecule of bacterial origin1.37E-03
57GO:0015031: protein transport1.73E-03
58GO:0007275: multicellular organism development1.77E-03
59GO:0051639: actin filament network formation1.85E-03
60GO:0002239: response to oomycetes1.85E-03
61GO:0009963: positive regulation of flavonoid biosynthetic process1.85E-03
62GO:0010731: protein glutathionylation1.85E-03
63GO:0071323: cellular response to chitin1.85E-03
64GO:0080024: indolebutyric acid metabolic process1.85E-03
65GO:0055070: copper ion homeostasis1.85E-03
66GO:0001676: long-chain fatty acid metabolic process1.85E-03
67GO:0010116: positive regulation of abscisic acid biosynthetic process1.85E-03
68GO:0009863: salicylic acid mediated signaling pathway1.89E-03
69GO:0030150: protein import into mitochondrial matrix1.89E-03
70GO:0006631: fatty acid metabolic process2.11E-03
71GO:0006886: intracellular protein transport2.13E-03
72GO:0009269: response to desiccation2.30E-03
73GO:0051764: actin crosslink formation2.49E-03
74GO:0045088: regulation of innate immune response2.49E-03
75GO:0006621: protein retention in ER lumen2.49E-03
76GO:0015867: ATP transport2.49E-03
77GO:0009306: protein secretion2.98E-03
78GO:0042742: defense response to bacterium3.05E-03
79GO:0006097: glyoxylate cycle3.18E-03
80GO:0009229: thiamine diphosphate biosynthetic process3.18E-03
81GO:0006665: sphingolipid metabolic process3.18E-03
82GO:1900425: negative regulation of defense response to bacterium3.93E-03
83GO:0033365: protein localization to organelle3.93E-03
84GO:0009228: thiamine biosynthetic process3.93E-03
85GO:0015866: ADP transport3.93E-03
86GO:0010256: endomembrane system organization3.93E-03
87GO:0006623: protein targeting to vacuole4.34E-03
88GO:0002229: defense response to oomycetes4.65E-03
89GO:0010193: response to ozone4.65E-03
90GO:0045926: negative regulation of growth4.74E-03
91GO:0031930: mitochondria-nucleus signaling pathway4.74E-03
92GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.74E-03
93GO:0009620: response to fungus4.77E-03
94GO:1900056: negative regulation of leaf senescence5.60E-03
95GO:1900057: positive regulation of leaf senescence5.60E-03
96GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.60E-03
97GO:0006333: chromatin assembly or disassembly5.60E-03
98GO:1902074: response to salt5.60E-03
99GO:0010044: response to aluminum ion5.60E-03
100GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.60E-03
101GO:0046470: phosphatidylcholine metabolic process5.60E-03
102GO:0006464: cellular protein modification process5.63E-03
103GO:1900150: regulation of defense response to fungus6.51E-03
104GO:0009850: auxin metabolic process6.51E-03
105GO:0006605: protein targeting6.51E-03
106GO:0031540: regulation of anthocyanin biosynthetic process6.51E-03
107GO:0006102: isocitrate metabolic process6.51E-03
108GO:0016559: peroxisome fission6.51E-03
109GO:0010029: regulation of seed germination7.11E-03
110GO:0009816: defense response to bacterium, incompatible interaction7.11E-03
111GO:0010120: camalexin biosynthetic process7.47E-03
112GO:0010417: glucuronoxylan biosynthetic process7.47E-03
113GO:0006906: vesicle fusion7.51E-03
114GO:0007338: single fertilization8.47E-03
115GO:0010332: response to gamma radiation8.47E-03
116GO:0010112: regulation of systemic acquired resistance8.47E-03
117GO:0015780: nucleotide-sugar transport8.47E-03
118GO:0009835: fruit ripening8.47E-03
119GO:0006351: transcription, DNA-templated9.25E-03
120GO:0043067: regulation of programmed cell death9.53E-03
121GO:0009086: methionine biosynthetic process9.53E-03
122GO:0010629: negative regulation of gene expression1.06E-02
123GO:0051555: flavonol biosynthetic process1.06E-02
124GO:0043069: negative regulation of programmed cell death1.06E-02
125GO:0009867: jasmonic acid mediated signaling pathway1.12E-02
126GO:0000038: very long-chain fatty acid metabolic process1.18E-02
127GO:0019684: photosynthesis, light reaction1.18E-02
128GO:0009089: lysine biosynthetic process via diaminopimelate1.18E-02
129GO:0009753: response to jasmonic acid1.24E-02
130GO:0006470: protein dephosphorylation1.28E-02
131GO:0045037: protein import into chloroplast stroma1.30E-02
132GO:0009617: response to bacterium1.35E-02
133GO:2000012: regulation of auxin polar transport1.42E-02
134GO:0010102: lateral root morphogenesis1.42E-02
135GO:0030036: actin cytoskeleton organization1.42E-02
136GO:0018107: peptidyl-threonine phosphorylation1.42E-02
137GO:0051707: response to other organism1.44E-02
138GO:0007034: vacuolar transport1.55E-02
139GO:0007030: Golgi organization1.68E-02
140GO:0090351: seedling development1.68E-02
141GO:0070588: calcium ion transmembrane transport1.68E-02
142GO:0006855: drug transmembrane transport1.69E-02
143GO:0031347: regulation of defense response1.75E-02
144GO:0042538: hyperosmotic salinity response1.81E-02
145GO:0000162: tryptophan biosynthetic process1.81E-02
146GO:0034976: response to endoplasmic reticulum stress1.81E-02
147GO:0009846: pollen germination1.81E-02
148GO:0000027: ribosomal large subunit assembly1.95E-02
149GO:0006486: protein glycosylation1.95E-02
150GO:0080147: root hair cell development1.95E-02
151GO:0045333: cellular respiration1.95E-02
152GO:0051017: actin filament bundle assembly1.95E-02
153GO:0006289: nucleotide-excision repair1.95E-02
154GO:0010224: response to UV-B2.02E-02
155GO:0006334: nucleosome assembly2.24E-02
156GO:0048278: vesicle docking2.24E-02
157GO:0009723: response to ethylene2.25E-02
158GO:0009814: defense response, incompatible interaction2.38E-02
159GO:0031348: negative regulation of defense response2.38E-02
160GO:0071456: cellular response to hypoxia2.38E-02
161GO:0009693: ethylene biosynthetic process2.54E-02
162GO:0009411: response to UV2.54E-02
163GO:0009414: response to water deprivation2.56E-02
164GO:0016192: vesicle-mediated transport2.62E-02
165GO:0042127: regulation of cell proliferation2.69E-02
166GO:0018105: peptidyl-serine phosphorylation2.86E-02
167GO:0010051: xylem and phloem pattern formation3.01E-02
168GO:0010087: phloem or xylem histogenesis3.01E-02
169GO:0045489: pectin biosynthetic process3.18E-02
170GO:0010197: polar nucleus fusion3.18E-02
171GO:0010182: sugar mediated signaling pathway3.18E-02
172GO:0061025: membrane fusion3.35E-02
173GO:0009749: response to glucose3.52E-02
174GO:0071554: cell wall organization or biogenesis3.69E-02
175GO:0006891: intra-Golgi vesicle-mediated transport3.69E-02
176GO:0006635: fatty acid beta-oxidation3.69E-02
177GO:0032502: developmental process3.87E-02
178GO:0009408: response to heat3.99E-02
179GO:0030163: protein catabolic process4.05E-02
180GO:0009567: double fertilization forming a zygote and endosperm4.23E-02
181GO:0051607: defense response to virus4.61E-02
182GO:0010150: leaf senescence4.78E-02
183GO:0006355: regulation of transcription, DNA-templated4.79E-02
184GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.99E-02
RankGO TermAdjusted P value
1GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
2GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
3GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity0.00E+00
4GO:0004555: alpha,alpha-trehalase activity0.00E+00
5GO:0005212: structural constituent of eye lens0.00E+00
6GO:0050334: thiaminase activity0.00E+00
7GO:0005046: KDEL sequence binding0.00E+00
8GO:0034338: short-chain carboxylesterase activity0.00E+00
9GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
10GO:0033759: flavone synthase activity0.00E+00
11GO:0031418: L-ascorbic acid binding1.66E-04
12GO:0102391: decanoate--CoA ligase activity2.49E-04
13GO:0004656: procollagen-proline 4-dioxygenase activity2.49E-04
14GO:0004467: long-chain fatty acid-CoA ligase activity3.23E-04
15GO:0015927: trehalase activity3.65E-04
16GO:0047150: betaine-homocysteine S-methyltransferase activity3.65E-04
17GO:0010285: L,L-diaminopimelate aminotransferase activity3.65E-04
18GO:0016920: pyroglutamyl-peptidase activity3.65E-04
19GO:0004630: phospholipase D activity4.96E-04
20GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity4.96E-04
21GO:0008142: oxysterol binding4.96E-04
22GO:0003994: aconitate hydratase activity7.94E-04
23GO:0000774: adenyl-nucleotide exchange factor activity7.94E-04
24GO:0032934: sterol binding7.94E-04
25GO:0050736: O-malonyltransferase activity7.94E-04
26GO:0015036: disulfide oxidoreductase activity7.94E-04
27GO:0005509: calcium ion binding8.07E-04
28GO:0005457: GDP-fucose transmembrane transporter activity1.29E-03
29GO:0003979: UDP-glucose 6-dehydrogenase activity1.29E-03
30GO:0003700: transcription factor activity, sequence-specific DNA binding1.41E-03
31GO:0043565: sequence-specific DNA binding1.52E-03
32GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.69E-03
33GO:0035529: NADH pyrophosphatase activity1.85E-03
34GO:0030527: structural constituent of chromatin1.85E-03
35GO:0010178: IAA-amino acid conjugate hydrolase activity1.85E-03
36GO:0001046: core promoter sequence-specific DNA binding1.89E-03
37GO:0035251: UDP-glucosyltransferase activity2.30E-03
38GO:0046923: ER retention sequence binding2.49E-03
39GO:0004930: G-protein coupled receptor activity2.49E-03
40GO:0009916: alternative oxidase activity2.49E-03
41GO:0004834: tryptophan synthase activity2.49E-03
42GO:0004623: phospholipase A2 activity3.18E-03
43GO:0047631: ADP-ribose diphosphatase activity3.18E-03
44GO:0000210: NAD+ diphosphatase activity3.93E-03
45GO:0005347: ATP transmembrane transporter activity4.74E-03
46GO:0015217: ADP transmembrane transporter activity4.74E-03
47GO:0046872: metal ion binding5.02E-03
48GO:0008320: protein transmembrane transporter activity5.60E-03
49GO:0047893: flavonol 3-O-glucosyltransferase activity6.51E-03
50GO:0052747: sinapyl alcohol dehydrogenase activity6.51E-03
51GO:0004869: cysteine-type endopeptidase inhibitor activity6.51E-03
52GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity8.47E-03
53GO:0005515: protein binding9.15E-03
54GO:0015297: antiporter activity1.01E-02
55GO:0004864: protein phosphatase inhibitor activity1.06E-02
56GO:0030234: enzyme regulator activity1.06E-02
57GO:0000149: SNARE binding1.22E-02
58GO:0045551: cinnamyl-alcohol dehydrogenase activity1.30E-02
59GO:0015198: oligopeptide transporter activity1.30E-02
60GO:0005388: calcium-transporting ATPase activity1.42E-02
61GO:0031072: heat shock protein binding1.42E-02
62GO:0005484: SNAP receptor activity1.44E-02
63GO:0008061: chitin binding1.68E-02
64GO:0003712: transcription cofactor activity1.68E-02
65GO:0051287: NAD binding1.75E-02
66GO:0003682: chromatin binding2.01E-02
67GO:0051087: chaperone binding2.09E-02
68GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.38E-02
69GO:0022857: transmembrane transporter activity2.62E-02
70GO:0016874: ligase activity2.62E-02
71GO:0003756: protein disulfide isomerase activity2.69E-02
72GO:0051082: unfolded protein binding2.78E-02
73GO:0005102: receptor binding2.85E-02
74GO:0015035: protein disulfide oxidoreductase activity2.86E-02
75GO:0042803: protein homodimerization activity3.26E-02
76GO:0016758: transferase activity, transferring hexosyl groups3.38E-02
77GO:0004722: protein serine/threonine phosphatase activity3.45E-02
78GO:0016740: transferase activity3.51E-02
79GO:0004872: receptor activity3.52E-02
80GO:0030170: pyridoxal phosphate binding3.85E-02
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.05E-02
82GO:0051015: actin filament binding4.05E-02
83GO:0008565: protein transporter activity4.15E-02
84GO:0008483: transaminase activity4.42E-02
85GO:0008237: metallopeptidase activity4.42E-02
86GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.46E-02
87GO:0004842: ubiquitin-protein transferase activity4.55E-02
88GO:0016413: O-acetyltransferase activity4.61E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane5.66E-07
2GO:0005789: endoplasmic reticulum membrane3.38E-06
3GO:0005783: endoplasmic reticulum3.37E-05
4GO:0005801: cis-Golgi network2.49E-04
5GO:0001405: presequence translocase-associated import motor3.65E-04
6GO:0005794: Golgi apparatus4.96E-04
7GO:0030665: clathrin-coated vesicle membrane7.02E-04
8GO:0031314: extrinsic component of mitochondrial inner membrane7.94E-04
9GO:0030134: ER to Golgi transport vesicle7.94E-04
10GO:0017119: Golgi transport complex8.18E-04
11GO:0005795: Golgi stack1.53E-03
12GO:0032432: actin filament bundle1.85E-03
13GO:0030658: transport vesicle membrane1.85E-03
14GO:0031902: late endosome membrane2.11E-03
15GO:0005741: mitochondrial outer membrane2.30E-03
16GO:0005743: mitochondrial inner membrane2.56E-03
17GO:0000164: protein phosphatase type 1 complex3.18E-03
18GO:0005802: trans-Golgi network5.84E-03
19GO:0000139: Golgi membrane5.89E-03
20GO:0005779: integral component of peroxisomal membrane7.47E-03
21GO:0005774: vacuolar membrane7.50E-03
22GO:0005768: endosome7.51E-03
23GO:0005884: actin filament1.18E-02
24GO:0031201: SNARE complex1.33E-02
25GO:0070469: respiratory chain2.09E-02
26GO:0031410: cytoplasmic vesicle2.38E-02
27GO:0022625: cytosolic large ribosomal subunit2.62E-02
28GO:0005744: mitochondrial inner membrane presequence translocase complex2.69E-02
29GO:0005777: peroxisome3.21E-02
30GO:0009543: chloroplast thylakoid lumen3.48E-02
31GO:0019898: extrinsic component of membrane3.52E-02
32GO:0005623: cell3.57E-02
33GO:0016020: membrane3.76E-02
34GO:0016592: mediator complex3.87E-02
35GO:0000785: chromatin3.87E-02
36GO:0005778: peroxisomal membrane4.42E-02
37GO:0005788: endoplasmic reticulum lumen4.99E-02
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Gene type



Gene DE type