co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56500

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
2	GO:1905157: positive regulation of photosynthesis	0.00E+00
3	GO:0009773: photosynthetic electron transport in photosystem I	1.10E-05
4	GO:0015995: chlorophyll biosynthetic process	1.96E-05
5	GO:0080112: seed growth	1.82E-04
6	GO:0005980: glycogen catabolic process	1.82E-04
7	GO:0000476: maturation of 4.5S rRNA	1.82E-04
8	GO:0000967: rRNA 5'-end processing	1.82E-04
9	GO:0009090: homoserine biosynthetic process	1.82E-04
10	GO:1905039: carboxylic acid transmembrane transport	1.82E-04
11	GO:1905200: gibberellic acid transmembrane transport	1.82E-04
12	GO:0019276: UDP-N-acetylgalactosamine metabolic process	1.82E-04
13	GO:0010028: xanthophyll cycle	1.82E-04
14	GO:0034337: RNA folding	1.82E-04
15	GO:0000023: maltose metabolic process	1.82E-04
16	GO:0006047: UDP-N-acetylglucosamine metabolic process	1.82E-04
17	GO:0000025: maltose catabolic process	1.82E-04
18	GO:0005982: starch metabolic process	2.59E-04
19	GO:0005983: starch catabolic process	4.06E-04
20	GO:0006898: receptor-mediated endocytosis	4.10E-04
21	GO:0005976: polysaccharide metabolic process	4.10E-04
22	GO:0010353: response to trehalose	4.10E-04
23	GO:0016122: xanthophyll metabolic process	4.10E-04
24	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.10E-04
25	GO:0034470: ncRNA processing	4.10E-04
26	GO:0055114: oxidation-reduction process	6.48E-04
27	GO:0006000: fructose metabolic process	6.69E-04
28	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	6.69E-04
29	GO:0006518: peptide metabolic process	6.69E-04
30	GO:0006696: ergosterol biosynthetic process	6.69E-04
31	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.55E-04
32	GO:0009067: aspartate family amino acid biosynthetic process	9.55E-04
33	GO:1902358: sulfate transmembrane transport	9.55E-04
34	GO:0045338: farnesyl diphosphate metabolic process	9.55E-04
35	GO:0006020: inositol metabolic process	9.55E-04
36	GO:0006021: inositol biosynthetic process	1.27E-03
37	GO:0071483: cellular response to blue light	1.27E-03
38	GO:0010021: amylopectin biosynthetic process	1.27E-03
39	GO:0015994: chlorophyll metabolic process	1.27E-03
40	GO:0019252: starch biosynthetic process	1.60E-03
41	GO:0015979: photosynthesis	1.60E-03
42	GO:0006656: phosphatidylcholine biosynthetic process	1.61E-03
43	GO:0009904: chloroplast accumulation movement	1.61E-03
44	GO:1901657: glycosyl compound metabolic process	1.94E-03
45	GO:0046855: inositol phosphate dephosphorylation	1.98E-03
46	GO:1902456: regulation of stomatal opening	1.98E-03
47	GO:0010190: cytochrome b6f complex assembly	1.98E-03
48	GO:0009643: photosynthetic acclimation	1.98E-03
49	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.98E-03
50	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.98E-03
51	GO:1901259: chloroplast rRNA processing	2.38E-03
52	GO:0009903: chloroplast avoidance movement	2.38E-03
53	GO:0009088: threonine biosynthetic process	2.38E-03
54	GO:0071333: cellular response to glucose stimulus	2.38E-03
55	GO:0008272: sulfate transport	2.80E-03
56	GO:0009610: response to symbiotic fungus	2.80E-03
57	GO:0005978: glycogen biosynthetic process	3.24E-03
58	GO:0006353: DNA-templated transcription, termination	3.24E-03
59	GO:0030091: protein repair	3.24E-03
60	GO:0052543: callose deposition in cell wall	3.24E-03
61	GO:0006002: fructose 6-phosphate metabolic process	3.71E-03
62	GO:0015996: chlorophyll catabolic process	3.71E-03
63	GO:0009821: alkaloid biosynthetic process	4.20E-03
64	GO:0009086: methionine biosynthetic process	4.71E-03
65	GO:0042761: very long-chain fatty acid biosynthetic process	4.71E-03
66	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	4.71E-03
67	GO:0009641: shade avoidance	5.24E-03
68	GO:0015770: sucrose transport	5.79E-03
69	GO:0009089: lysine biosynthetic process via diaminopimelate	5.79E-03
70	GO:0006790: sulfur compound metabolic process	6.35E-03
71	GO:0030048: actin filament-based movement	6.94E-03
72	GO:0018107: peptidyl-threonine phosphorylation	6.94E-03
73	GO:0006094: gluconeogenesis	6.94E-03
74	GO:0005986: sucrose biosynthetic process	6.94E-03
75	GO:0006813: potassium ion transport	7.02E-03
76	GO:0019253: reductive pentose-phosphate cycle	7.55E-03
77	GO:0007015: actin filament organization	7.55E-03
78	GO:0010223: secondary shoot formation	7.55E-03
79	GO:0009901: anther dehiscence	8.18E-03
80	GO:0005985: sucrose metabolic process	8.18E-03
81	GO:0046854: phosphatidylinositol phosphorylation	8.18E-03
82	GO:0006636: unsaturated fatty acid biosynthetic process	8.82E-03
83	GO:0009768: photosynthesis, light harvesting in photosystem I	1.02E-02
84	GO:0032259: methylation	1.05E-02
85	GO:0016114: terpenoid biosynthetic process	1.09E-02
86	GO:0051260: protein homooligomerization	1.09E-02
87	GO:0061077: chaperone-mediated protein folding	1.09E-02
88	GO:0016226: iron-sulfur cluster assembly	1.16E-02
89	GO:0030433: ubiquitin-dependent ERAD pathway	1.16E-02
90	GO:0019748: secondary metabolic process	1.16E-02
91	GO:0071215: cellular response to abscisic acid stimulus	1.23E-02
92	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.23E-02
93	GO:0009741: response to brassinosteroid	1.54E-02
94	GO:0032502: developmental process	1.87E-02
95	GO:0009630: gravitropism	1.87E-02
96	GO:0009828: plant-type cell wall loosening	2.05E-02
97	GO:0001666: response to hypoxia	2.32E-02
98	GO:0016126: sterol biosynthetic process	2.32E-02
99	GO:0006906: vesicle fusion	2.51E-02
100	GO:0009813: flavonoid biosynthetic process	2.91E-02
101	GO:0009631: cold acclimation	3.11E-02
102	GO:0007568: aging	3.11E-02
103	GO:0006631: fatty acid metabolic process	3.76E-02
104	GO:0006887: exocytosis	3.76E-02
105	GO:0010114: response to red light	3.98E-02
106	GO:0000209: protein polyubiquitination	4.09E-02
107	GO:0009664: plant-type cell wall organization	4.68E-02
108	GO:0009408: response to heat	4.89E-02
109	GO:0006364: rRNA processing	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0090711: FMN hydrolase activity	0.00E+00
2	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0004567: beta-mannosidase activity	0.00E+00
5	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
6	GO:0080082: esculin beta-glucosidase activity	0.00E+00
7	GO:0046408: chlorophyll synthetase activity	0.00E+00
8	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
9	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
10	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
11	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
12	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
13	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.82E-04
14	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	1.82E-04
15	GO:0004134: 4-alpha-glucanotransferase activity	1.82E-04
16	GO:0004645: phosphorylase activity	1.82E-04
17	GO:0034256: chlorophyll(ide) b reductase activity	1.82E-04
18	GO:0045486: naringenin 3-dioxygenase activity	1.82E-04
19	GO:0035671: enone reductase activity	1.82E-04
20	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	1.82E-04
21	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.82E-04
22	GO:0080079: cellobiose glucosidase activity	1.82E-04
23	GO:1905201: gibberellin transmembrane transporter activity	1.82E-04
24	GO:0050521: alpha-glucan, water dikinase activity	1.82E-04
25	GO:0008184: glycogen phosphorylase activity	1.82E-04
26	GO:0015386: potassium:proton antiporter activity	3.54E-04
27	GO:0008934: inositol monophosphate 1-phosphatase activity	4.10E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	4.10E-04
29	GO:0004412: homoserine dehydrogenase activity	4.10E-04
30	GO:0008967: phosphoglycolate phosphatase activity	4.10E-04
31	GO:0018708: thiol S-methyltransferase activity	4.10E-04
32	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.10E-04
33	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.10E-04
34	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.10E-04
35	GO:0010297: heteropolysaccharide binding	4.10E-04
36	GO:0052832: inositol monophosphate 3-phosphatase activity	4.10E-04
37	GO:0033201: alpha-1,4-glucan synthase activity	4.10E-04
38	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.10E-04
39	GO:0016491: oxidoreductase activity	5.92E-04
40	GO:0043169: cation binding	6.69E-04
41	GO:0004373: glycogen (starch) synthase activity	6.69E-04
42	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.69E-04
43	GO:0015079: potassium ion transmembrane transporter activity	7.90E-04
44	GO:0016851: magnesium chelatase activity	9.55E-04
45	GO:0022890: inorganic cation transmembrane transporter activity	9.55E-04
46	GO:0004072: aspartate kinase activity	9.55E-04
47	GO:0019201: nucleotide kinase activity	9.55E-04
48	GO:0009011: starch synthase activity	1.27E-03
49	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.27E-03
50	GO:0048038: quinone binding	1.71E-03
51	GO:0008200: ion channel inhibitor activity	1.98E-03
52	GO:2001070: starch binding	1.98E-03
53	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.38E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.38E-03
55	GO:0004017: adenylate kinase activity	2.38E-03
56	GO:0004602: glutathione peroxidase activity	2.38E-03
57	GO:0102483: scopolin beta-glucosidase activity	2.89E-03
58	GO:0004033: aldo-keto reductase (NADP) activity	3.24E-03
59	GO:0004525: ribonuclease III activity	3.24E-03
60	GO:0008271: secondary active sulfate transmembrane transporter activity	3.71E-03
61	GO:0008422: beta-glucosidase activity	4.42E-03
62	GO:0016844: strictosidine synthase activity	4.71E-03
63	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.71E-03
64	GO:0008515: sucrose transmembrane transporter activity	5.79E-03
65	GO:0047372: acylglycerol lipase activity	5.79E-03
66	GO:0015116: sulfate transmembrane transporter activity	6.35E-03
67	GO:0031072: heat shock protein binding	6.94E-03
68	GO:0004535: poly(A)-specific ribonuclease activity	7.55E-03
69	GO:0003774: motor activity	7.55E-03
70	GO:0051119: sugar transmembrane transporter activity	8.18E-03
71	GO:0031409: pigment binding	8.82E-03
72	GO:0051536: iron-sulfur cluster binding	9.48E-03
73	GO:0031418: L-ascorbic acid binding	9.48E-03
74	GO:0005528: FK506 binding	9.48E-03
75	GO:0016779: nucleotidyltransferase activity	1.16E-02
76	GO:0030570: pectate lyase activity	1.23E-02
77	GO:0005249: voltage-gated potassium channel activity	1.46E-02
78	GO:0015299: solute:proton antiporter activity	1.62E-02
79	GO:0016597: amino acid binding	2.23E-02
80	GO:0016168: chlorophyll binding	2.42E-02
81	GO:0008168: methyltransferase activity	2.59E-02
82	GO:0008236: serine-type peptidase activity	2.71E-02
83	GO:0004222: metalloendopeptidase activity	3.01E-02
84	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.25E-02
85	GO:0003746: translation elongation factor activity	3.32E-02
86	GO:0003993: acid phosphatase activity	3.43E-02
87	GO:0000149: SNARE binding	3.54E-02
88	GO:0050661: NADP binding	3.65E-02
89	GO:0005484: SNAP receptor activity	3.98E-02
90	GO:0004185: serine-type carboxypeptidase activity	3.98E-02
91	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02
92	GO:0043621: protein self-association	4.21E-02
93	GO:0015293: symporter activity	4.32E-02
94	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.09E-27
2	GO:0009535: chloroplast thylakoid membrane	1.63E-17
3	GO:0009534: chloroplast thylakoid	1.92E-12
4	GO:0009941: chloroplast envelope	8.69E-07
5	GO:0009570: chloroplast stroma	1.01E-06
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.68E-06
7	GO:0009543: chloroplast thylakoid lumen	2.93E-05
8	GO:0031977: thylakoid lumen	5.42E-05
9	GO:0009501: amyloplast	1.43E-04
10	GO:0031969: chloroplast membrane	2.36E-04
11	GO:0010007: magnesium chelatase complex	6.69E-04
12	GO:0042651: thylakoid membrane	7.90E-04
13	GO:0008076: voltage-gated potassium channel complex	9.55E-04
14	GO:0009579: thylakoid	1.82E-03
15	GO:0010287: plastoglobule	1.84E-03
16	GO:0010319: stromule	2.19E-03
17	GO:0031982: vesicle	3.24E-03
18	GO:0031901: early endosome membrane	4.20E-03
19	GO:0016459: myosin complex	5.24E-03
20	GO:0032040: small-subunit processome	6.35E-03
21	GO:0030095: chloroplast photosystem II	7.55E-03
22	GO:0030076: light-harvesting complex	8.18E-03
23	GO:0009654: photosystem II oxygen evolving complex	1.02E-02
24	GO:0015935: small ribosomal subunit	1.09E-02
25	GO:0019898: extrinsic component of membrane	1.70E-02
26	GO:0031201: SNARE complex	3.76E-02