co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046680: response to DDT	0.00E+00
2	GO:0002191: cap-dependent translational initiation	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0009173: pyrimidine ribonucleoside monophosphate metabolic process	0.00E+00
5	GO:0006903: vesicle targeting	0.00E+00
6	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
7	GO:0036258: multivesicular body assembly	0.00E+00
8	GO:0006511: ubiquitin-dependent protein catabolic process	1.06E-14
9	GO:0030163: protein catabolic process	4.09E-09
10	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	5.00E-07
11	GO:0070676: intralumenal vesicle formation	1.33E-05
12	GO:0030433: ubiquitin-dependent ERAD pathway	5.67E-05
13	GO:0043248: proteasome assembly	5.89E-05
14	GO:0042176: regulation of protein catabolic process	5.89E-05
15	GO:0009612: response to mechanical stimulus	8.20E-05
16	GO:0051603: proteolysis involved in cellular protein catabolic process	1.13E-04
17	GO:0015031: protein transport	1.23E-04
18	GO:1900424: regulation of defense response to bacterium	1.80E-04
19	GO:0048455: stamen formation	1.80E-04
20	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.80E-04
21	GO:0000032: cell wall mannoprotein biosynthetic process	1.80E-04
22	GO:0006790: sulfur compound metabolic process	4.00E-04
23	GO:0080026: response to indolebutyric acid	4.05E-04
24	GO:0050688: regulation of defense response to virus	4.05E-04
25	GO:2000072: regulation of defense response to fungus, incompatible interaction	4.05E-04
26	GO:0009805: coumarin biosynthetic process	4.05E-04
27	GO:0031124: mRNA 3'-end processing	4.05E-04
28	GO:0051788: response to misfolded protein	4.05E-04
29	GO:0010043: response to zinc ion	4.17E-04
30	GO:0046854: phosphatidylinositol phosphorylation	5.74E-04
31	GO:0009062: fatty acid catabolic process	6.61E-04
32	GO:0090630: activation of GTPase activity	6.61E-04
33	GO:0033591: response to L-ascorbic acid	6.61E-04
34	GO:0010498: proteasomal protein catabolic process	6.61E-04
35	GO:0006612: protein targeting to membrane	9.45E-04
36	GO:0006893: Golgi to plasma membrane transport	9.45E-04
37	GO:0002679: respiratory burst involved in defense response	9.45E-04
38	GO:0010255: glucose mediated signaling pathway	9.45E-04
39	GO:0071786: endoplasmic reticulum tubular network organization	9.45E-04
40	GO:0080024: indolebutyric acid metabolic process	9.45E-04
41	GO:0006515: misfolded or incompletely synthesized protein catabolic process	9.45E-04
42	GO:0009298: GDP-mannose biosynthetic process	9.45E-04
43	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	9.45E-04
44	GO:0042147: retrograde transport, endosome to Golgi	1.18E-03
45	GO:0010222: stem vascular tissue pattern formation	1.25E-03
46	GO:0033320: UDP-D-xylose biosynthetic process	1.25E-03
47	GO:0010363: regulation of plant-type hypersensitive response	1.25E-03
48	GO:0006221: pyrimidine nucleotide biosynthetic process	1.25E-03
49	GO:0033356: UDP-L-arabinose metabolic process	1.25E-03
50	GO:0009646: response to absence of light	1.47E-03
51	GO:0006564: L-serine biosynthetic process	1.59E-03
52	GO:0005513: detection of calcium ion	1.59E-03
53	GO:0006461: protein complex assembly	1.59E-03
54	GO:0007035: vacuolar acidification	1.96E-03
55	GO:0001731: formation of translation preinitiation complex	1.96E-03
56	GO:0048827: phyllome development	1.96E-03
57	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.96E-03
58	GO:0006555: methionine metabolic process	1.96E-03
59	GO:0042732: D-xylose metabolic process	1.96E-03
60	GO:0048280: vesicle fusion with Golgi apparatus	2.35E-03
61	GO:0019509: L-methionine salvage from methylthioadenosine	2.35E-03
62	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.77E-03
63	GO:0048528: post-embryonic root development	2.77E-03
64	GO:0000338: protein deneddylation	2.77E-03
65	GO:0006888: ER to Golgi vesicle-mediated transport	2.84E-03
66	GO:0048766: root hair initiation	3.21E-03
67	GO:0050821: protein stabilization	3.21E-03
68	GO:0006102: isocitrate metabolic process	3.21E-03
69	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.21E-03
70	GO:0048767: root hair elongation	3.30E-03
71	GO:0006972: hyperosmotic response	3.67E-03
72	GO:0009699: phenylpropanoid biosynthetic process	3.67E-03
73	GO:0009932: cell tip growth	3.67E-03
74	GO:0060321: acceptance of pollen	3.67E-03
75	GO:0006379: mRNA cleavage	4.15E-03
76	GO:0046685: response to arsenic-containing substance	4.15E-03
77	GO:0009651: response to salt stress	4.39E-03
78	GO:0043067: regulation of programmed cell death	4.65E-03
79	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.65E-03
80	GO:0009744: response to sucrose	5.12E-03
81	GO:0006896: Golgi to vacuole transport	5.18E-03
82	GO:0009555: pollen development	5.52E-03
83	GO:0043085: positive regulation of catalytic activity	5.72E-03
84	GO:0048765: root hair cell differentiation	5.72E-03
85	GO:0006378: mRNA polyadenylation	5.72E-03
86	GO:0046856: phosphatidylinositol dephosphorylation	5.72E-03
87	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.28E-03
88	GO:0009846: pollen germination	6.43E-03
89	GO:0016192: vesicle-mediated transport	7.07E-03
90	GO:0007034: vacuolar transport	7.46E-03
91	GO:0006446: regulation of translational initiation	7.46E-03
92	GO:0019853: L-ascorbic acid biosynthetic process	8.08E-03
93	GO:0010053: root epidermal cell differentiation	8.08E-03
94	GO:0009225: nucleotide-sugar metabolic process	8.08E-03
95	GO:0007031: peroxisome organization	8.08E-03
96	GO:0045454: cell redox homeostasis	8.34E-03
97	GO:0034976: response to endoplasmic reticulum stress	8.71E-03
98	GO:0010187: negative regulation of seed germination	9.37E-03
99	GO:0000027: ribosomal large subunit assembly	9.37E-03
100	GO:0006338: chromatin remodeling	9.37E-03
101	GO:0009553: embryo sac development	9.54E-03
102	GO:0046686: response to cadmium ion	9.65E-03
103	GO:0015992: proton transport	1.07E-02
104	GO:0010431: seed maturation	1.07E-02
105	GO:0007005: mitochondrion organization	1.14E-02
106	GO:0080092: regulation of pollen tube growth	1.14E-02
107	GO:0019748: secondary metabolic process	1.14E-02
108	GO:0010227: floral organ abscission	1.22E-02
109	GO:0009561: megagametogenesis	1.29E-02
110	GO:0034220: ion transmembrane transport	1.44E-02
111	GO:0015991: ATP hydrolysis coupled proton transport	1.44E-02
112	GO:0006662: glycerol ether metabolic process	1.52E-02
113	GO:0010154: fruit development	1.52E-02
114	GO:0015986: ATP synthesis coupled proton transport	1.60E-02
115	GO:0055072: iron ion homeostasis	1.68E-02
116	GO:0006623: protein targeting to vacuole	1.68E-02
117	GO:0010183: pollen tube guidance	1.68E-02
118	GO:0006891: intra-Golgi vesicle-mediated transport	1.77E-02
119	GO:0006635: fatty acid beta-oxidation	1.77E-02
120	GO:0009630: gravitropism	1.85E-02
121	GO:0009793: embryo development ending in seed dormancy	1.91E-02
122	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.91E-02
123	GO:0006914: autophagy	2.03E-02
124	GO:0006904: vesicle docking involved in exocytosis	2.11E-02
125	GO:0016579: protein deubiquitination	2.20E-02
126	GO:0010029: regulation of seed germination	2.39E-02
127	GO:0009816: defense response to bacterium, incompatible interaction	2.39E-02
128	GO:0006974: cellular response to DNA damage stimulus	2.48E-02
129	GO:0006950: response to stress	2.58E-02
130	GO:0030244: cellulose biosynthetic process	2.77E-02
131	GO:0009817: defense response to fungus, incompatible interaction	2.77E-02
132	GO:0009860: pollen tube growth	2.85E-02
133	GO:0009832: plant-type cell wall biogenesis	2.87E-02
134	GO:0006499: N-terminal protein myristoylation	2.97E-02
135	GO:0007568: aging	3.08E-02
136	GO:0009867: jasmonic acid mediated signaling pathway	3.28E-02
137	GO:0045087: innate immune response	3.28E-02
138	GO:0016051: carbohydrate biosynthetic process	3.28E-02
139	GO:0034599: cellular response to oxidative stress	3.39E-02
140	GO:0006099: tricarboxylic acid cycle	3.39E-02
141	GO:0006887: exocytosis	3.71E-02
142	GO:0009640: photomorphogenesis	3.93E-02
143	GO:0009926: auxin polar transport	3.93E-02
144	GO:0009408: response to heat	4.81E-02
145	GO:0006486: protein glycosylation	4.86E-02
146	GO:0009585: red, far-red light phototransduction	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0098808: mRNA cap binding	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
5	GO:0004298: threonine-type endopeptidase activity	2.25E-10
6	GO:0036402: proteasome-activating ATPase activity	5.00E-07
7	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	5.74E-06
8	GO:0017025: TBP-class protein binding	2.53E-05
9	GO:0008233: peptidase activity	2.67E-05
10	GO:0031593: polyubiquitin binding	5.89E-05
11	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.20E-05
12	GO:0019786: Atg8-specific protease activity	1.80E-04
13	GO:0004476: mannose-6-phosphate isomerase activity	1.80E-04
14	GO:0030234: enzyme regulator activity	3.00E-04
15	GO:0010297: heteropolysaccharide binding	4.05E-04
16	GO:0051879: Hsp90 protein binding	4.05E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	4.05E-04
18	GO:0004127: cytidylate kinase activity	4.05E-04
19	GO:0070361: mitochondrial light strand promoter anti-sense binding	4.05E-04
20	GO:0051731: polynucleotide 5'-hydroxyl-kinase activity	4.05E-04
21	GO:0019779: Atg8 activating enzyme activity	4.05E-04
22	GO:0004190: aspartic-type endopeptidase activity	5.74E-04
23	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.61E-04
24	GO:0043130: ubiquitin binding	7.06E-04
25	GO:0004449: isocitrate dehydrogenase (NAD+) activity	9.45E-04
26	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.45E-04
27	GO:0001653: peptide receptor activity	9.45E-04
28	GO:0009041: uridylate kinase activity	9.45E-04
29	GO:0016887: ATPase activity	1.02E-03
30	GO:0047134: protein-disulfide reductase activity	1.18E-03
31	GO:0070628: proteasome binding	1.25E-03
32	GO:0019776: Atg8 ligase activity	1.25E-03
33	GO:0004791: thioredoxin-disulfide reductase activity	1.47E-03
34	GO:0051117: ATPase binding	1.96E-03
35	GO:0048040: UDP-glucuronate decarboxylase activity	1.96E-03
36	GO:0004656: procollagen-proline 4-dioxygenase activity	2.35E-03
37	GO:0070403: NAD+ binding	2.35E-03
38	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.84E-03
39	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.98E-03
40	GO:0030955: potassium ion binding	4.65E-03
41	GO:0004743: pyruvate kinase activity	4.65E-03
42	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.18E-03
43	GO:0008047: enzyme activator activity	5.18E-03
44	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.72E-03
45	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.86E-03
46	GO:0004725: protein tyrosine phosphatase activity	8.71E-03
47	GO:0031418: L-ascorbic acid binding	9.37E-03
48	GO:0004722: protein serine/threonine phosphatase activity	9.37E-03
49	GO:0043424: protein histidine kinase binding	1.00E-02
50	GO:0004176: ATP-dependent peptidase activity	1.07E-02
51	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.07E-02
52	GO:0003756: protein disulfide isomerase activity	1.29E-02
53	GO:0004402: histone acetyltransferase activity	1.44E-02
54	GO:0008565: protein transporter activity	1.48E-02
55	GO:0004872: receptor activity	1.68E-02
56	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.77E-02
57	GO:0004518: nuclease activity	1.85E-02
58	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.94E-02
59	GO:0008237: metallopeptidase activity	2.11E-02
60	GO:0016597: amino acid binding	2.20E-02
61	GO:0051213: dioxygenase activity	2.30E-02
62	GO:0015250: water channel activity	2.30E-02
63	GO:0008375: acetylglucosaminyltransferase activity	2.48E-02
64	GO:0004721: phosphoprotein phosphatase activity	2.58E-02
65	GO:0000287: magnesium ion binding	2.59E-02
66	GO:0008236: serine-type peptidase activity	2.68E-02
67	GO:0005096: GTPase activator activity	2.87E-02
68	GO:0003746: translation elongation factor activity	3.28E-02
69	GO:0000149: SNARE binding	3.50E-02
70	GO:0005484: SNAP receptor activity	3.93E-02
71	GO:0005524: ATP binding	4.07E-02
72	GO:0035091: phosphatidylinositol binding	4.16E-02
73	GO:0005198: structural molecule activity	4.27E-02
74	GO:0051287: NAD binding	4.50E-02
75	GO:0016787: hydrolase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0019867: outer membrane	0.00E+00
3	GO:0000502: proteasome complex	7.60E-21
4	GO:0005839: proteasome core complex	2.15E-12
5	GO:0005829: cytosol	5.72E-09
6	GO:0008540: proteasome regulatory particle, base subcomplex	6.53E-08
7	GO:0008541: proteasome regulatory particle, lid subcomplex	1.39E-07
8	GO:0031597: cytosolic proteasome complex	8.81E-07
9	GO:0031595: nuclear proteasome complex	1.44E-06
10	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.40E-04
11	GO:0019773: proteasome core complex, alpha-subunit complex	1.75E-04
12	GO:0009510: plasmodesmatal desmotubule	1.80E-04
13	GO:0012510: trans-Golgi network transport vesicle membrane	1.80E-04
14	GO:0031902: late endosome membrane	5.83E-04
15	GO:0005838: proteasome regulatory particle	6.61E-04
16	GO:0071782: endoplasmic reticulum tubular network	9.45E-04
17	GO:0005849: mRNA cleavage factor complex	9.45E-04
18	GO:0005775: vacuolar lumen	9.45E-04
19	GO:0005783: endoplasmic reticulum	1.14E-03
20	GO:0030660: Golgi-associated vesicle membrane	1.25E-03
21	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.25E-03
22	GO:0005776: autophagosome	1.25E-03
23	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.25E-03
24	GO:0005774: vacuolar membrane	1.56E-03
25	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.59E-03
26	GO:0000813: ESCRT I complex	1.59E-03
27	GO:0016282: eukaryotic 43S preinitiation complex	1.96E-03
28	GO:0030904: retromer complex	1.96E-03
29	GO:0030140: trans-Golgi network transport vesicle	1.96E-03
30	GO:0033290: eukaryotic 48S preinitiation complex	2.35E-03
31	GO:0000815: ESCRT III complex	2.35E-03
32	GO:0005788: endoplasmic reticulum lumen	2.56E-03
33	GO:0005737: cytoplasm	2.73E-03
34	GO:0005789: endoplasmic reticulum membrane	2.75E-03
35	GO:0005802: trans-Golgi network	2.96E-03
36	GO:0031982: vesicle	3.21E-03
37	GO:0012507: ER to Golgi transport vesicle membrane	3.21E-03
38	GO:0000421: autophagosome membrane	3.21E-03
39	GO:0000325: plant-type vacuole	3.63E-03
40	GO:0000326: protein storage vacuole	3.67E-03
41	GO:0008180: COP9 signalosome	4.15E-03
42	GO:0048471: perinuclear region of cytoplasm	5.72E-03
43	GO:0005765: lysosomal membrane	5.72E-03
44	GO:0031307: integral component of mitochondrial outer membrane	6.28E-03
45	GO:0009536: plastid	6.36E-03
46	GO:0005794: Golgi apparatus	6.49E-03
47	GO:0031410: cytoplasmic vesicle	1.14E-02
48	GO:0005773: vacuole	1.17E-02
49	GO:0005768: endosome	1.37E-02
50	GO:0005770: late endosome	1.52E-02
51	GO:0009504: cell plate	1.68E-02
52	GO:0000145: exocyst	1.85E-02
53	GO:0016592: mediator complex	1.85E-02
54	GO:0032580: Golgi cisterna membrane	2.03E-02
55	GO:0005778: peroxisomal membrane	2.11E-02
56	GO:0019005: SCF ubiquitin ligase complex	2.77E-02
57	GO:0005634: nucleus	3.22E-02
58	GO:0009506: plasmodesma	3.46E-02
59	GO:0031201: SNARE complex	3.71E-02
60	GO:0005856: cytoskeleton	4.27E-02
61	GO:0031966: mitochondrial membrane	4.62E-02
62	GO:0005886: plasma membrane	4.69E-02