co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G56230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
3	GO:0042352: GDP-L-fucose salvage	0.00E+00
4	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
5	GO:0001778: plasma membrane repair	0.00E+00
6	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
7	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
8	GO:0046620: regulation of organ growth	2.40E-05
9	GO:0009733: response to auxin	1.09E-04
10	GO:0040008: regulation of growth	1.63E-04
11	GO:0010438: cellular response to sulfur starvation	1.92E-04
12	GO:0016131: brassinosteroid metabolic process	1.92E-04
13	GO:0005992: trehalose biosynthetic process	2.80E-04
14	GO:0015904: tetracycline transport	4.70E-04
15	GO:0034757: negative regulation of iron ion transport	4.70E-04
16	GO:0000373: Group II intron splicing	8.55E-04
17	GO:0009734: auxin-activated signaling pathway	9.04E-04
18	GO:1900871: chloroplast mRNA modification	1.01E-03
19	GO:0010271: regulation of chlorophyll catabolic process	1.01E-03
20	GO:0006432: phenylalanyl-tRNA aminoacylation	1.01E-03
21	GO:0080009: mRNA methylation	1.01E-03
22	GO:0009786: regulation of asymmetric cell division	1.01E-03
23	GO:0046740: transport of virus in host, cell to cell	1.01E-03
24	GO:0006420: arginyl-tRNA aminoacylation	1.01E-03
25	GO:0043039: tRNA aminoacylation	1.01E-03
26	GO:1900865: chloroplast RNA modification	1.01E-03
27	GO:0006423: cysteinyl-tRNA aminoacylation	1.01E-03
28	GO:0009416: response to light stimulus	1.50E-03
29	GO:0010582: floral meristem determinacy	1.55E-03
30	GO:0071398: cellular response to fatty acid	1.65E-03
31	GO:0030029: actin filament-based process	1.65E-03
32	GO:0045910: negative regulation of DNA recombination	1.65E-03
33	GO:0033591: response to L-ascorbic acid	1.65E-03
34	GO:0031022: nuclear migration along microfilament	1.65E-03
35	GO:0080117: secondary growth	1.65E-03
36	GO:0009658: chloroplast organization	1.96E-03
37	GO:0000160: phosphorelay signal transduction system	2.15E-03
38	GO:0006424: glutamyl-tRNA aminoacylation	2.39E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	2.39E-03
40	GO:0051513: regulation of monopolar cell growth	2.39E-03
41	GO:0051639: actin filament network formation	2.39E-03
42	GO:0032456: endocytic recycling	2.39E-03
43	GO:0010239: chloroplast mRNA processing	2.39E-03
44	GO:0006612: protein targeting to membrane	2.39E-03
45	GO:0051017: actin filament bundle assembly	2.75E-03
46	GO:0006021: inositol biosynthetic process	3.22E-03
47	GO:0009755: hormone-mediated signaling pathway	3.22E-03
48	GO:0051764: actin crosslink formation	3.22E-03
49	GO:0042274: ribosomal small subunit biogenesis	3.22E-03
50	GO:0008295: spermidine biosynthetic process	3.22E-03
51	GO:0009926: auxin polar transport	3.78E-03
52	GO:0071215: cellular response to abscisic acid stimulus	3.99E-03
53	GO:0009686: gibberellin biosynthetic process	3.99E-03
54	GO:0009904: chloroplast accumulation movement	4.13E-03
55	GO:0010158: abaxial cell fate specification	4.13E-03
56	GO:0080110: sporopollenin biosynthetic process	4.13E-03
57	GO:0045487: gibberellin catabolic process	4.13E-03
58	GO:0010087: phloem or xylem histogenesis	5.09E-03
59	GO:0003006: developmental process involved in reproduction	5.11E-03
60	GO:0009759: indole glucosinolate biosynthetic process	5.11E-03
61	GO:0016554: cytidine to uridine editing	5.11E-03
62	GO:1902456: regulation of stomatal opening	5.11E-03
63	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	5.11E-03
64	GO:0048831: regulation of shoot system development	5.11E-03
65	GO:0009736: cytokinin-activated signaling pathway	5.54E-03
66	GO:0009612: response to mechanical stimulus	6.17E-03
67	GO:0048509: regulation of meristem development	6.17E-03
68	GO:0009903: chloroplast avoidance movement	6.17E-03
69	GO:0031930: mitochondria-nucleus signaling pathway	6.17E-03
70	GO:0010583: response to cyclopentenone	7.26E-03
71	GO:0030497: fatty acid elongation	7.30E-03
72	GO:0010050: vegetative phase change	7.30E-03
73	GO:0010098: suspensor development	7.30E-03
74	GO:0009639: response to red or far red light	8.24E-03
75	GO:0009850: auxin metabolic process	8.49E-03
76	GO:2000070: regulation of response to water deprivation	8.49E-03
77	GO:0000105: histidine biosynthetic process	8.49E-03
78	GO:0009819: drought recovery	8.49E-03
79	GO:0006402: mRNA catabolic process	8.49E-03
80	GO:0010439: regulation of glucosinolate biosynthetic process	8.49E-03
81	GO:0070413: trehalose metabolism in response to stress	8.49E-03
82	GO:0032544: plastid translation	9.75E-03
83	GO:0071482: cellular response to light stimulus	9.75E-03
84	GO:0048507: meristem development	1.11E-02
85	GO:0048573: photoperiodism, flowering	1.16E-02
86	GO:0016571: histone methylation	1.25E-02
87	GO:0016573: histone acetylation	1.25E-02
88	GO:0009098: leucine biosynthetic process	1.25E-02
89	GO:0010018: far-red light signaling pathway	1.25E-02
90	GO:0048829: root cap development	1.39E-02
91	GO:0009641: shade avoidance	1.39E-02
92	GO:0006298: mismatch repair	1.39E-02
93	GO:0010192: mucilage biosynthetic process	1.39E-02
94	GO:0010629: negative regulation of gene expression	1.39E-02
95	GO:0009299: mRNA transcription	1.39E-02
96	GO:0045454: cell redox homeostasis	1.44E-02
97	GO:0045892: negative regulation of transcription, DNA-templated	1.47E-02
98	GO:0043085: positive regulation of catalytic activity	1.54E-02
99	GO:0009682: induced systemic resistance	1.54E-02
100	GO:0006865: amino acid transport	1.57E-02
101	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.70E-02
102	GO:0006790: sulfur compound metabolic process	1.70E-02
103	GO:0002213: defense response to insect	1.70E-02
104	GO:0045037: protein import into chloroplast stroma	1.70E-02
105	GO:0009451: RNA modification	1.80E-02
106	GO:2000028: regulation of photoperiodism, flowering	1.86E-02
107	GO:0009725: response to hormone	1.86E-02
108	GO:0010588: cotyledon vascular tissue pattern formation	1.86E-02
109	GO:0010102: lateral root morphogenesis	1.86E-02
110	GO:0009691: cytokinin biosynthetic process	1.86E-02
111	GO:0006631: fatty acid metabolic process	1.95E-02
112	GO:0009266: response to temperature stimulus	2.03E-02
113	GO:0048467: gynoecium development	2.03E-02
114	GO:0010020: chloroplast fission	2.03E-02
115	GO:0042546: cell wall biogenesis	2.20E-02
116	GO:0090351: seedling development	2.20E-02
117	GO:0046854: phosphatidylinositol phosphorylation	2.20E-02
118	GO:0042753: positive regulation of circadian rhythm	2.38E-02
119	GO:0009833: plant-type primary cell wall biogenesis	2.38E-02
120	GO:0000162: tryptophan biosynthetic process	2.38E-02
121	GO:0009636: response to toxic substance	2.38E-02
122	GO:0006338: chromatin remodeling	2.56E-02
123	GO:0007010: cytoskeleton organization	2.56E-02
124	GO:0006418: tRNA aminoacylation for protein translation	2.74E-02
125	GO:0016114: terpenoid biosynthetic process	2.94E-02
126	GO:0010431: seed maturation	2.94E-02
127	GO:0007005: mitochondrion organization	3.13E-02
128	GO:0016226: iron-sulfur cluster assembly	3.13E-02
129	GO:0010082: regulation of root meristem growth	3.33E-02
130	GO:0009625: response to insect	3.33E-02
131	GO:0009693: ethylene biosynthetic process	3.33E-02
132	GO:0048316: seed development	3.49E-02
133	GO:0010584: pollen exine formation	3.54E-02
134	GO:0016117: carotenoid biosynthetic process	3.74E-02
135	GO:0070417: cellular response to cold	3.74E-02
136	GO:0009740: gibberellic acid mediated signaling pathway	3.82E-02
137	GO:0080022: primary root development	3.96E-02
138	GO:0008033: tRNA processing	3.96E-02
139	GO:0010118: stomatal movement	3.96E-02
140	GO:0009793: embryo development ending in seed dormancy	4.00E-02
141	GO:0006662: glycerol ether metabolic process	4.17E-02
142	GO:0010182: sugar mediated signaling pathway	4.17E-02
143	GO:0009741: response to brassinosteroid	4.17E-02
144	GO:0010268: brassinosteroid homeostasis	4.17E-02
145	GO:0009958: positive gravitropism	4.17E-02
146	GO:0010305: leaf vascular tissue pattern formation	4.17E-02
147	GO:0009742: brassinosteroid mediated signaling pathway	4.30E-02
148	GO:0048544: recognition of pollen	4.39E-02
149	GO:0007018: microtubule-based movement	4.39E-02
150	GO:0009646: response to absence of light	4.39E-02
151	GO:0016132: brassinosteroid biosynthetic process	4.85E-02
152	GO:0071554: cell wall organization or biogenesis	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
5	GO:0050201: fucokinase activity	0.00E+00
6	GO:0071633: dihydroceramidase activity	0.00E+00
7	GO:0004401: histidinol-phosphatase activity	0.00E+00
8	GO:0001872: (1->3)-beta-D-glucan binding	7.17E-05
9	GO:0004805: trehalose-phosphatase activity	7.84E-05
10	GO:0003723: RNA binding	3.83E-04
11	GO:0008395: steroid hydroxylase activity	4.70E-04
12	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.70E-04
13	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.70E-04
14	GO:0005227: calcium activated cation channel activity	4.70E-04
15	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.70E-04
16	GO:0052381: tRNA dimethylallyltransferase activity	4.70E-04
17	GO:0004818: glutamate-tRNA ligase activity	4.70E-04
18	GO:0017118: lipoyltransferase activity	1.01E-03
19	GO:0003852: 2-isopropylmalate synthase activity	1.01E-03
20	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.01E-03
21	GO:0043425: bHLH transcription factor binding	1.01E-03
22	GO:0004814: arginine-tRNA ligase activity	1.01E-03
23	GO:0004047: aminomethyltransferase activity	1.01E-03
24	GO:0004766: spermidine synthase activity	1.01E-03
25	GO:0052832: inositol monophosphate 3-phosphatase activity	1.01E-03
26	GO:0004817: cysteine-tRNA ligase activity	1.01E-03
27	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.01E-03
28	GO:0008805: carbon-monoxide oxygenase activity	1.01E-03
29	GO:0008934: inositol monophosphate 1-phosphatase activity	1.01E-03
30	GO:0008493: tetracycline transporter activity	1.01E-03
31	GO:0052833: inositol monophosphate 4-phosphatase activity	1.01E-03
32	GO:0004826: phenylalanine-tRNA ligase activity	1.01E-03
33	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.01E-03
34	GO:0050736: O-malonyltransferase activity	1.01E-03
35	GO:1901981: phosphatidylinositol phosphate binding	1.01E-03
36	GO:0009884: cytokinin receptor activity	1.01E-03
37	GO:0000049: tRNA binding	1.55E-03
38	GO:0005034: osmosensor activity	1.65E-03
39	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.65E-03
40	GO:0004148: dihydrolipoyl dehydrogenase activity	1.65E-03
41	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.39E-03
42	GO:0031418: L-ascorbic acid binding	2.75E-03
43	GO:0004335: galactokinase activity	3.22E-03
44	GO:0019199: transmembrane receptor protein kinase activity	3.22E-03
45	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.13E-03
46	GO:0004523: RNA-DNA hybrid ribonuclease activity	4.13E-03
47	GO:0004462: lactoylglutathione lyase activity	5.11E-03
48	GO:0030983: mismatched DNA binding	5.11E-03
49	GO:0004709: MAP kinase kinase kinase activity	5.11E-03
50	GO:0000293: ferric-chelate reductase activity	5.11E-03
51	GO:0050662: coenzyme binding	5.91E-03
52	GO:0019900: kinase binding	6.17E-03
53	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.17E-03
54	GO:0016832: aldehyde-lyase activity	6.17E-03
55	GO:0004519: endonuclease activity	6.58E-03
56	GO:0004518: nuclease activity	7.26E-03
57	GO:0000156: phosphorelay response regulator activity	7.74E-03
58	GO:0051015: actin filament binding	7.74E-03
59	GO:0016759: cellulose synthase activity	8.24E-03
60	GO:0015035: protein disulfide oxidoreductase activity	9.03E-03
61	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.11E-02
62	GO:0030247: polysaccharide binding	1.16E-02
63	GO:0004673: protein histidine kinase activity	1.39E-02
64	GO:0008047: enzyme activator activity	1.39E-02
65	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.49E-02
66	GO:0008017: microtubule binding	1.85E-02
67	GO:0000155: phosphorelay sensor kinase activity	1.86E-02
68	GO:0009982: pseudouridine synthase activity	1.86E-02
69	GO:0003725: double-stranded RNA binding	1.86E-02
70	GO:0008146: sulfotransferase activity	2.20E-02
71	GO:0003712: transcription cofactor activity	2.20E-02
72	GO:0043621: protein self-association	2.29E-02
73	GO:0042802: identical protein binding	2.36E-02
74	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.38E-02
75	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.38E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.38E-02
77	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.47E-02
78	GO:0005528: FK506 binding	2.56E-02
79	GO:0008134: transcription factor binding	2.56E-02
80	GO:0043424: protein histidine kinase binding	2.74E-02
81	GO:0005345: purine nucleobase transmembrane transporter activity	2.74E-02
82	GO:0003676: nucleic acid binding	2.92E-02
83	GO:0003964: RNA-directed DNA polymerase activity	2.94E-02
84	GO:0008408: 3'-5' exonuclease activity	2.94E-02
85	GO:0010333: terpene synthase activity	2.94E-02
86	GO:0003777: microtubule motor activity	3.16E-02
87	GO:0015171: amino acid transmembrane transporter activity	3.16E-02
88	GO:0016491: oxidoreductase activity	3.22E-02
89	GO:0016760: cellulose synthase (UDP-forming) activity	3.33E-02
90	GO:0047134: protein-disulfide reductase activity	3.74E-02
91	GO:0004812: aminoacyl-tRNA ligase activity	3.74E-02
92	GO:0016874: ligase activity	3.82E-02
93	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.09E-02
94	GO:0004527: exonuclease activity	4.17E-02
95	GO:0005199: structural constituent of cell wall	4.17E-02
96	GO:0004791: thioredoxin-disulfide reductase activity	4.39E-02
97	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0032541: cortical endoplasmic reticulum	4.70E-04
4	GO:0031357: integral component of chloroplast inner membrane	1.01E-03
5	GO:0009513: etioplast	1.01E-03
6	GO:0009509: chromoplast	1.65E-03
7	GO:0030139: endocytic vesicle	1.65E-03
8	GO:0032585: multivesicular body membrane	2.39E-03
9	GO:0032432: actin filament bundle	2.39E-03
10	GO:0009898: cytoplasmic side of plasma membrane	3.22E-03
11	GO:0009507: chloroplast	7.03E-03
12	GO:0009986: cell surface	7.30E-03
13	GO:0009501: amyloplast	8.49E-03
14	GO:0009707: chloroplast outer membrane	1.29E-02
15	GO:0005884: actin filament	1.54E-02
16	GO:0030095: chloroplast photosystem II	2.03E-02
17	GO:0005875: microtubule associated complex	2.38E-02
18	GO:0005856: cytoskeleton	2.38E-02
19	GO:0046658: anchored component of plasma membrane	2.49E-02
20	GO:0009654: photosystem II oxygen evolving complex	2.74E-02
21	GO:0015629: actin cytoskeleton	3.33E-02
22	GO:0010008: endosome membrane	3.49E-02
23	GO:0005871: kinesin complex	3.74E-02
24	GO:0005874: microtubule	3.78E-02
25	GO:0009706: chloroplast inner membrane	4.06E-02
26	GO:0019898: extrinsic component of membrane	4.62E-02
27	GO:0009504: cell plate	4.62E-02
28	GO:0031965: nuclear membrane	4.62E-02