Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56210

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045014: negative regulation of transcription by glucose0.00E+00
2GO:0080127: fruit septum development0.00E+00
3GO:0006907: pinocytosis0.00E+00
4GO:0009733: response to auxin2.21E-07
5GO:0061062: regulation of nematode larval development1.09E-05
6GO:0046620: regulation of organ growth2.76E-05
7GO:0048629: trichome patterning1.37E-04
8GO:0048497: maintenance of floral organ identity2.11E-04
9GO:0009734: auxin-activated signaling pathway3.08E-04
10GO:0006351: transcription, DNA-templated3.49E-04
11GO:0045786: negative regulation of cell cycle4.98E-04
12GO:0006434: seryl-tRNA aminoacylation4.98E-04
13GO:0000025: maltose catabolic process4.98E-04
14GO:0010726: positive regulation of hydrogen peroxide metabolic process4.98E-04
15GO:0006438: valyl-tRNA aminoacylation4.98E-04
16GO:0046520: sphingoid biosynthetic process4.98E-04
17GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process4.98E-04
18GO:0032958: inositol phosphate biosynthetic process4.98E-04
19GO:0009686: gibberellin biosynthetic process5.15E-04
20GO:0009786: regulation of asymmetric cell division1.07E-03
21GO:0031648: protein destabilization1.07E-03
22GO:0043039: tRNA aminoacylation1.07E-03
23GO:0006741: NADP biosynthetic process1.07E-03
24GO:0080005: photosystem stoichiometry adjustment1.07E-03
25GO:1900033: negative regulation of trichome patterning1.07E-03
26GO:0010583: response to cyclopentenone1.09E-03
27GO:0005983: starch catabolic process1.68E-03
28GO:0071398: cellular response to fatty acid1.75E-03
29GO:0048575: short-day photoperiodism, flowering1.75E-03
30GO:0019674: NAD metabolic process1.75E-03
31GO:0090506: axillary shoot meristem initiation1.75E-03
32GO:0009887: animal organ morphogenesis2.16E-03
33GO:0010321: regulation of vegetative phase change2.54E-03
34GO:0019363: pyridine nucleotide biosynthetic process2.54E-03
35GO:0006020: inositol metabolic process2.54E-03
36GO:0007276: gamete generation2.54E-03
37GO:0006863: purine nucleobase transport2.70E-03
38GO:0016567: protein ubiquitination3.23E-03
39GO:0042991: transcription factor import into nucleus3.42E-03
40GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.55E-03
41GO:0006355: regulation of transcription, DNA-templated3.78E-03
42GO:0009926: auxin polar transport4.23E-03
43GO:0009107: lipoate biosynthetic process4.38E-03
44GO:0045487: gibberellin catabolic process4.38E-03
45GO:0045892: negative regulation of transcription, DNA-templated4.71E-03
46GO:0042127: regulation of cell proliferation4.74E-03
47GO:0010405: arabinogalactan protein metabolic process5.43E-03
48GO:0042549: photosystem II stabilization5.43E-03
49GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity5.43E-03
50GO:0010358: leaf shaping5.43E-03
51GO:0016554: cytidine to uridine editing5.43E-03
52GO:0018258: protein O-linked glycosylation via hydroxyproline5.43E-03
53GO:0009913: epidermal cell differentiation5.43E-03
54GO:1902456: regulation of stomatal opening5.43E-03
55GO:0003006: developmental process involved in reproduction5.43E-03
56GO:0010942: positive regulation of cell death5.43E-03
57GO:0009741: response to brassinosteroid5.99E-03
58GO:0009861: jasmonic acid and ethylene-dependent systemic resistance6.56E-03
59GO:0048825: cotyledon development6.92E-03
60GO:0048364: root development7.13E-03
61GO:0071554: cell wall organization or biogenesis7.41E-03
62GO:0007050: cell cycle arrest7.76E-03
63GO:0000082: G1/S transition of mitotic cell cycle7.76E-03
64GO:0010444: guard mother cell differentiation7.76E-03
65GO:0009567: double fertilization forming a zygote and endosperm9.00E-03
66GO:0019760: glucosinolate metabolic process9.00E-03
67GO:0010492: maintenance of shoot apical meristem identity9.03E-03
68GO:0042255: ribosome assembly9.03E-03
69GO:0006353: DNA-templated transcription, termination9.03E-03
70GO:0006402: mRNA catabolic process9.03E-03
71GO:0009704: de-etiolation9.03E-03
72GO:0007186: G-protein coupled receptor signaling pathway1.04E-02
73GO:0048366: leaf development1.16E-02
74GO:0009056: catabolic process1.18E-02
75GO:0000902: cell morphogenesis1.18E-02
76GO:0048507: meristem development1.18E-02
77GO:0051865: protein autoubiquitination1.18E-02
78GO:0048589: developmental growth1.18E-02
79GO:0048573: photoperiodism, flowering1.27E-02
80GO:0009638: phototropism1.33E-02
81GO:0006779: porphyrin-containing compound biosynthetic process1.33E-02
82GO:1900865: chloroplast RNA modification1.33E-02
83GO:0048829: root cap development1.48E-02
84GO:0009641: shade avoidance1.48E-02
85GO:0006949: syncytium formation1.48E-02
86GO:0006782: protoporphyrinogen IX biosynthetic process1.48E-02
87GO:0009870: defense response signaling pathway, resistance gene-dependent1.48E-02
88GO:0008285: negative regulation of cell proliferation1.64E-02
89GO:0009750: response to fructose1.64E-02
90GO:0007165: signal transduction1.67E-02
91GO:0009416: response to light stimulus1.79E-02
92GO:0012501: programmed cell death1.81E-02
93GO:0010582: floral meristem determinacy1.81E-02
94GO:0010152: pollen maturation1.81E-02
95GO:0040008: regulation of growth1.84E-02
96GO:0009767: photosynthetic electron transport chain1.98E-02
97GO:0010588: cotyledon vascular tissue pattern formation1.98E-02
98GO:0010102: lateral root morphogenesis1.98E-02
99GO:0009785: blue light signaling pathway1.98E-02
100GO:0010628: positive regulation of gene expression1.98E-02
101GO:0006006: glucose metabolic process1.98E-02
102GO:2000028: regulation of photoperiodism, flowering1.98E-02
103GO:0051301: cell division2.07E-02
104GO:0006302: double-strand break repair2.16E-02
105GO:0048768: root hair cell tip growth2.16E-02
106GO:0048467: gynoecium development2.16E-02
107GO:0010207: photosystem II assembly2.16E-02
108GO:0007034: vacuolar transport2.16E-02
109GO:0010223: secondary shoot formation2.16E-02
110GO:0006468: protein phosphorylation2.19E-02
111GO:0009739: response to gibberellin2.25E-02
112GO:0071555: cell wall organization2.27E-02
113GO:0009744: response to sucrose2.31E-02
114GO:0006470: protein dephosphorylation2.31E-02
115GO:0090351: seedling development2.34E-02
116GO:0042546: cell wall biogenesis2.41E-02
117GO:0005992: trehalose biosynthetic process2.72E-02
118GO:0009664: plant-type cell wall organization2.90E-02
119GO:0019953: sexual reproduction2.92E-02
120GO:0006418: tRNA aminoacylation for protein translation2.92E-02
121GO:0009736: cytokinin-activated signaling pathway3.12E-02
122GO:0051321: meiotic cell cycle3.13E-02
123GO:0016114: terpenoid biosynthetic process3.13E-02
124GO:0009826: unidimensional cell growth3.22E-02
125GO:2000022: regulation of jasmonic acid mediated signaling pathway3.33E-02
126GO:0007005: mitochondrion organization3.33E-02
127GO:0009909: regulation of flower development3.45E-02
128GO:0009693: ethylene biosynthetic process3.55E-02
129GO:0071215: cellular response to abscisic acid stimulus3.55E-02
130GO:0010082: regulation of root meristem growth3.55E-02
131GO:0001944: vasculature development3.55E-02
132GO:0048443: stamen development3.77E-02
133GO:0045492: xylan biosynthetic process3.77E-02
134GO:0006284: base-excision repair3.77E-02
135GO:0010091: trichome branching3.77E-02
136GO:0048367: shoot system development3.80E-02
137GO:0009723: response to ethylene4.04E-02
138GO:0009740: gibberellic acid mediated signaling pathway4.17E-02
139GO:0010087: phloem or xylem histogenesis4.21E-02
140GO:0010118: stomatal movement4.21E-02
141GO:0000271: polysaccharide biosynthetic process4.21E-02
142GO:0080022: primary root development4.21E-02
143GO:0009624: response to nematode4.42E-02
144GO:0010182: sugar mediated signaling pathway4.44E-02
145GO:0010268: brassinosteroid homeostasis4.44E-02
146GO:0009960: endosperm development4.44E-02
147GO:0045489: pectin biosynthetic process4.44E-02
148GO:0010305: leaf vascular tissue pattern formation4.44E-02
149GO:0009958: positive gravitropism4.44E-02
150GO:0009908: flower development4.47E-02
151GO:0007018: microtubule-based movement4.68E-02
152GO:0051726: regulation of cell cycle4.69E-02
153GO:0009793: embryo development ending in seed dormancy4.76E-02
154GO:0009749: response to glucose4.91E-02
RankGO TermAdjusted P value
1GO:0009899: ent-kaurene synthase activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
4GO:0043565: sequence-specific DNA binding2.29E-04
5GO:0042736: NADH kinase activity4.98E-04
6GO:0033857: diphosphoinositol-pentakisphosphate kinase activity4.98E-04
7GO:0010012: steroid 22-alpha hydroxylase activity4.98E-04
8GO:0000170: sphingosine hydroxylase activity4.98E-04
9GO:0000829: inositol heptakisphosphate kinase activity4.98E-04
10GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.98E-04
11GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.98E-04
12GO:0004828: serine-tRNA ligase activity4.98E-04
13GO:0000828: inositol hexakisphosphate kinase activity4.98E-04
14GO:0004134: 4-alpha-glucanotransferase activity4.98E-04
15GO:0004832: valine-tRNA ligase activity4.98E-04
16GO:0003700: transcription factor activity, sequence-specific DNA binding9.73E-04
17GO:0017118: lipoyltransferase activity1.07E-03
18GO:0045543: gibberellin 2-beta-dioxygenase activity1.07E-03
19GO:0010296: prenylcysteine methylesterase activity1.07E-03
20GO:0016415: octanoyltransferase activity1.07E-03
21GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.07E-03
22GO:0042284: sphingolipid delta-4 desaturase activity1.07E-03
23GO:0019156: isoamylase activity1.07E-03
24GO:0017022: myosin binding1.07E-03
25GO:0004871: signal transducer activity1.35E-03
26GO:0045544: gibberellin 20-oxidase activity2.54E-03
27GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.54E-03
28GO:0005345: purine nucleobase transmembrane transporter activity3.31E-03
29GO:0010011: auxin binding3.42E-03
30GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.42E-03
31GO:0019199: transmembrane receptor protein kinase activity3.42E-03
32GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.38E-03
33GO:0008725: DNA-3-methyladenine glycosylase activity4.38E-03
34GO:1990714: hydroxyproline O-galactosyltransferase activity5.43E-03
35GO:0004709: MAP kinase kinase kinase activity5.43E-03
36GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity5.43E-03
37GO:0030332: cyclin binding5.43E-03
38GO:0004556: alpha-amylase activity5.43E-03
39GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity5.99E-03
40GO:0016853: isomerase activity6.45E-03
41GO:0016832: aldehyde-lyase activity6.56E-03
42GO:0009055: electron carrier activity7.49E-03
43GO:0004518: nuclease activity7.92E-03
44GO:0016413: O-acetyltransferase activity1.02E-02
45GO:0003951: NAD+ kinase activity1.04E-02
46GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.18E-02
47GO:0004674: protein serine/threonine kinase activity1.27E-02
48GO:0004805: trehalose-phosphatase activity1.48E-02
49GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.53E-02
50GO:0004722: protein serine/threonine phosphatase activity1.89E-02
51GO:0004672: protein kinase activity1.90E-02
52GO:0003725: double-stranded RNA binding1.98E-02
53GO:0004190: aspartic-type endopeptidase activity2.34E-02
54GO:0003712: transcription cofactor activity2.34E-02
55GO:0043621: protein self-association2.50E-02
56GO:0004519: endonuclease activity2.54E-02
57GO:0031418: L-ascorbic acid binding2.72E-02
58GO:0008408: 3'-5' exonuclease activity3.13E-02
59GO:0010333: terpene synthase activity3.13E-02
60GO:0033612: receptor serine/threonine kinase binding3.13E-02
61GO:0003964: RNA-directed DNA polymerase activity3.13E-02
62GO:0016298: lipase activity3.23E-02
63GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.33E-02
64GO:0016301: kinase activity3.40E-02
65GO:0003777: microtubule motor activity3.45E-02
66GO:0003727: single-stranded RNA binding3.77E-02
67GO:0004812: aminoacyl-tRNA ligase activity3.99E-02
68GO:0003677: DNA binding4.34E-02
69GO:0005199: structural constituent of cell wall4.44E-02
70GO:0001085: RNA polymerase II transcription factor binding4.44E-02
71GO:0015035: protein disulfide oxidoreductase activity4.55E-02
72GO:0052689: carboxylic ester hydrolase activity4.96E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0000791: euchromatin4.98E-04
3GO:0009569: chloroplast starch grain1.07E-03
4GO:0030870: Mre11 complex1.07E-03
5GO:0008287: protein serine/threonine phosphatase complex1.75E-03
6GO:0030139: endocytic vesicle1.75E-03
7GO:0009531: secondary cell wall2.54E-03
8GO:0032585: multivesicular body membrane2.54E-03
9GO:0009654: photosystem II oxygen evolving complex3.31E-03
10GO:0000795: synaptonemal complex4.38E-03
11GO:0000815: ESCRT III complex6.56E-03
12GO:0019898: extrinsic component of membrane6.92E-03
13GO:0009986: cell surface7.76E-03
14GO:0009501: amyloplast9.03E-03
15GO:0005886: plasma membrane1.63E-02
16GO:0009508: plastid chromosome1.98E-02
17GO:0030095: chloroplast photosystem II2.16E-02
18GO:0005875: microtubule associated complex2.53E-02
19GO:0009532: plastid stroma3.13E-02
20GO:0005871: kinesin complex3.99E-02
21GO:0009504: cell plate4.91E-02
<
Gene type



Gene DE type