Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
2GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
3GO:0015690: aluminum cation transport0.00E+00
4GO:1900367: positive regulation of defense response to insect0.00E+00
5GO:0002764: immune response-regulating signaling pathway0.00E+00
6GO:0006987: activation of signaling protein activity involved in unfolded protein response0.00E+00
7GO:0033587: shikimate biosynthetic process0.00E+00
8GO:0010324: membrane invagination0.00E+00
9GO:0032499: detection of peptidoglycan0.00E+00
10GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
11GO:0071327: cellular response to trehalose stimulus0.00E+00
12GO:0043048: dolichyl monophosphate biosynthetic process0.00E+00
13GO:0010200: response to chitin2.67E-08
14GO:0031348: negative regulation of defense response9.85E-07
15GO:0006952: defense response1.19E-06
16GO:0060548: negative regulation of cell death1.31E-06
17GO:0009697: salicylic acid biosynthetic process2.92E-06
18GO:0019725: cellular homeostasis9.20E-06
19GO:0009611: response to wounding2.00E-05
20GO:0010150: leaf senescence2.26E-05
21GO:0071456: cellular response to hypoxia2.70E-05
22GO:0006468: protein phosphorylation4.02E-05
23GO:0033358: UDP-L-arabinose biosynthetic process1.19E-04
24GO:0080142: regulation of salicylic acid biosynthetic process1.19E-04
25GO:0045227: capsule polysaccharide biosynthetic process1.19E-04
26GO:0009266: response to temperature stimulus1.65E-04
27GO:0046777: protein autophosphorylation1.71E-04
28GO:0010225: response to UV-C1.83E-04
29GO:0009643: photosynthetic acclimation2.60E-04
30GO:0009620: response to fungus2.61E-04
31GO:0042372: phylloquinone biosynthetic process3.49E-04
32GO:0009751: response to salicylic acid3.65E-04
33GO:0009625: response to insect4.35E-04
34GO:0051938: L-glutamate import4.56E-04
35GO:0015760: glucose-6-phosphate transport4.56E-04
36GO:0046256: 2,4,6-trinitrotoluene catabolic process4.56E-04
37GO:0019567: arabinose biosynthetic process4.56E-04
38GO:0015969: guanosine tetraphosphate metabolic process4.56E-04
39GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.56E-04
40GO:0010421: hydrogen peroxide-mediated programmed cell death4.56E-04
41GO:1901183: positive regulation of camalexin biosynthetic process4.56E-04
42GO:0009270: response to humidity4.56E-04
43GO:0032491: detection of molecule of fungal origin4.56E-04
44GO:0042759: long-chain fatty acid biosynthetic process4.56E-04
45GO:0048508: embryonic meristem development4.56E-04
46GO:0042391: regulation of membrane potential5.95E-04
47GO:0051707: response to other organism6.09E-04
48GO:2000031: regulation of salicylic acid mediated signaling pathway6.84E-04
49GO:0009646: response to absence of light7.18E-04
50GO:0006979: response to oxidative stress7.56E-04
51GO:0006098: pentose-phosphate shunt8.19E-04
52GO:0090333: regulation of stomatal closure8.19E-04
53GO:0010112: regulation of systemic acquired resistance8.19E-04
54GO:0006486: protein glycosylation9.59E-04
55GO:1900426: positive regulation of defense response to bacterium9.64E-04
56GO:0010115: regulation of abscisic acid biosynthetic process9.85E-04
57GO:0015865: purine nucleotide transport9.85E-04
58GO:0044419: interspecies interaction between organisms9.85E-04
59GO:0009945: radial axis specification9.85E-04
60GO:0010271: regulation of chlorophyll catabolic process9.85E-04
61GO:0015712: hexose phosphate transport9.85E-04
62GO:0051258: protein polymerization9.85E-04
63GO:0043091: L-arginine import9.85E-04
64GO:0006123: mitochondrial electron transport, cytochrome c to oxygen9.85E-04
65GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.85E-04
66GO:0015802: basic amino acid transport9.85E-04
67GO:0010618: aerenchyma formation9.85E-04
68GO:0080181: lateral root branching9.85E-04
69GO:0006470: protein dephosphorylation1.06E-03
70GO:0009626: plant-type hypersensitive response1.36E-03
71GO:0009816: defense response to bacterium, incompatible interaction1.46E-03
72GO:0048281: inflorescence morphogenesis1.60E-03
73GO:0015695: organic cation transport1.60E-03
74GO:0015714: phosphoenolpyruvate transport1.60E-03
75GO:1900055: regulation of leaf senescence1.60E-03
76GO:0006954: inflammatory response1.60E-03
77GO:0010498: proteasomal protein catabolic process1.60E-03
78GO:0034051: negative regulation of plant-type hypersensitive response1.60E-03
79GO:0016045: detection of bacterium1.60E-03
80GO:1900140: regulation of seedling development1.60E-03
81GO:0010359: regulation of anion channel activity1.60E-03
82GO:0035436: triose phosphate transmembrane transport1.60E-03
83GO:0045793: positive regulation of cell size1.60E-03
84GO:0010186: positive regulation of cellular defense response1.60E-03
85GO:0055046: microgametogenesis1.68E-03
86GO:0009225: nucleotide-sugar metabolic process2.13E-03
87GO:0010167: response to nitrate2.13E-03
88GO:0070588: calcium ion transmembrane transport2.13E-03
89GO:0042742: defense response to bacterium2.19E-03
90GO:0046902: regulation of mitochondrial membrane permeability2.32E-03
91GO:0010306: rhamnogalacturonan II biosynthetic process2.32E-03
92GO:0072583: clathrin-dependent endocytosis2.32E-03
93GO:0015696: ammonium transport2.32E-03
94GO:0071323: cellular response to chitin2.32E-03
95GO:0002679: respiratory burst involved in defense response2.32E-03
96GO:0051289: protein homotetramerization2.32E-03
97GO:0046513: ceramide biosynthetic process2.32E-03
98GO:0046836: glycolipid transport2.32E-03
99GO:0048194: Golgi vesicle budding2.32E-03
100GO:2000377: regulation of reactive oxygen species metabolic process2.63E-03
101GO:0009652: thigmotropism3.12E-03
102GO:0045088: regulation of innate immune response3.12E-03
103GO:0072488: ammonium transmembrane transport3.12E-03
104GO:0071219: cellular response to molecule of bacterial origin3.12E-03
105GO:0010508: positive regulation of autophagy3.12E-03
106GO:0015713: phosphoglycerate transport3.12E-03
107GO:1901141: regulation of lignin biosynthetic process3.12E-03
108GO:0010109: regulation of photosynthesis3.12E-03
109GO:0010483: pollen tube reception3.12E-03
110GO:0010017: red or far-red light signaling pathway3.50E-03
111GO:0006012: galactose metabolic process3.82E-03
112GO:0034052: positive regulation of plant-type hypersensitive response4.00E-03
113GO:0009164: nucleoside catabolic process4.00E-03
114GO:1900425: negative regulation of defense response to bacterium4.95E-03
115GO:0010337: regulation of salicylic acid metabolic process4.95E-03
116GO:0018258: protein O-linked glycosylation via hydroxyproline4.95E-03
117GO:0006574: valine catabolic process4.95E-03
118GO:0002238: response to molecule of fungal origin4.95E-03
119GO:0010942: positive regulation of cell death4.95E-03
120GO:0010405: arabinogalactan protein metabolic process4.95E-03
121GO:0009617: response to bacterium4.96E-03
122GO:0009737: response to abscisic acid5.18E-03
123GO:0045926: negative regulation of growth5.98E-03
124GO:0009612: response to mechanical stimulus5.98E-03
125GO:0009942: longitudinal axis specification5.98E-03
126GO:0010310: regulation of hydrogen peroxide metabolic process5.98E-03
127GO:0009749: response to glucose6.06E-03
128GO:0010193: response to ozone6.49E-03
129GO:0071446: cellular response to salicylic acid stimulus7.07E-03
130GO:1900056: negative regulation of leaf senescence7.07E-03
131GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c7.07E-03
132GO:0050829: defense response to Gram-negative bacterium7.07E-03
133GO:0010161: red light signaling pathway7.07E-03
134GO:0009624: response to nematode8.21E-03
135GO:0009787: regulation of abscisic acid-activated signaling pathway8.23E-03
136GO:0009819: drought recovery8.23E-03
137GO:0043068: positive regulation of programmed cell death8.23E-03
138GO:0001666: response to hypoxia9.41E-03
139GO:0010204: defense response signaling pathway, resistance gene-independent9.45E-03
140GO:0030968: endoplasmic reticulum unfolded protein response9.45E-03
141GO:0010099: regulation of photomorphogenesis9.45E-03
142GO:0009627: systemic acquired resistance1.05E-02
143GO:0009051: pentose-phosphate shunt, oxidative branch1.07E-02
144GO:0051865: protein autoubiquitination1.07E-02
145GO:0046916: cellular transition metal ion homeostasis1.07E-02
146GO:0006950: response to stress1.11E-02
147GO:0050832: defense response to fungus1.19E-02
148GO:0048354: mucilage biosynthetic process involved in seed coat development1.21E-02
149GO:0010380: regulation of chlorophyll biosynthetic process1.21E-02
150GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.21E-02
151GO:0009409: response to cold1.21E-02
152GO:0007165: signal transduction1.23E-02
153GO:0016567: protein ubiquitination1.26E-02
154GO:0009832: plant-type cell wall biogenesis1.30E-02
155GO:0007064: mitotic sister chromatid cohesion1.35E-02
156GO:0006032: chitin catabolic process1.35E-02
157GO:0009407: toxin catabolic process1.36E-02
158GO:0010119: regulation of stomatal movement1.43E-02
159GO:0007568: aging1.43E-02
160GO:0009682: induced systemic resistance1.49E-02
161GO:0035556: intracellular signal transduction1.56E-02
162GO:0009867: jasmonic acid mediated signaling pathway1.57E-02
163GO:0045087: innate immune response1.57E-02
164GO:0008361: regulation of cell size1.64E-02
165GO:0012501: programmed cell death1.64E-02
166GO:0015706: nitrate transport1.64E-02
167GO:0002213: defense response to insect1.64E-02
168GO:0010105: negative regulation of ethylene-activated signaling pathway1.64E-02
169GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.64E-02
170GO:0009785: blue light signaling pathway1.80E-02
171GO:0006006: glucose metabolic process1.80E-02
172GO:0034605: cellular response to heat1.96E-02
173GO:0002237: response to molecule of bacterial origin1.96E-02
174GO:0007034: vacuolar transport1.96E-02
175GO:0010540: basipetal auxin transport1.96E-02
176GO:0009744: response to sucrose2.02E-02
177GO:0009969: xyloglucan biosynthetic process2.13E-02
178GO:0046854: phosphatidylinositol phosphorylation2.13E-02
179GO:0009636: response to toxic substance2.27E-02
180GO:0006855: drug transmembrane transport2.36E-02
181GO:0006874: cellular calcium ion homeostasis2.66E-02
182GO:0009695: jasmonic acid biosynthetic process2.66E-02
183GO:0009809: lignin biosynthetic process2.73E-02
184GO:0009269: response to desiccation2.84E-02
185GO:0003333: amino acid transmembrane transport2.84E-02
186GO:0016998: cell wall macromolecule catabolic process2.84E-02
187GO:0009909: regulation of flower development3.02E-02
188GO:0016226: iron-sulfur cluster assembly3.03E-02
189GO:2000022: regulation of jasmonic acid mediated signaling pathway3.03E-02
190GO:0009561: megagametogenesis3.42E-02
191GO:0070417: cellular response to cold3.63E-02
192GO:0042147: retrograde transport, endosome to Golgi3.63E-02
193GO:0080167: response to karrikin3.73E-02
194GO:0042631: cellular response to water deprivation3.83E-02
195GO:0000271: polysaccharide biosynthetic process3.83E-02
196GO:0010118: stomatal movement3.83E-02
197GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.89E-02
198GO:0006885: regulation of pH4.04E-02
199GO:0045489: pectin biosynthetic process4.04E-02
200GO:0009416: response to light stimulus4.27E-02
201GO:0009414: response to water deprivation4.47E-02
202GO:0008654: phospholipid biosynthetic process4.47E-02
203GO:0002229: defense response to oomycetes4.69E-02
204GO:0000302: response to reactive oxygen species4.69E-02
205GO:0006891: intra-Golgi vesicle-mediated transport4.69E-02
206GO:0016032: viral process4.92E-02
207GO:0019761: glucosinolate biosynthetic process4.92E-02
208GO:0009630: gravitropism4.92E-02
RankGO TermAdjusted P value
1GO:0005212: structural constituent of eye lens0.00E+00
2GO:2001080: chitosan binding0.00E+00
3GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
4GO:0004168: dolichol kinase activity0.00E+00
5GO:0016301: kinase activity7.81E-07
6GO:0004674: protein serine/threonine kinase activity2.19E-06
7GO:0019199: transmembrane receptor protein kinase activity1.19E-04
8GO:0050373: UDP-arabinose 4-epimerase activity1.19E-04
9GO:0070696: transmembrane receptor protein serine/threonine kinase binding1.83E-04
10GO:0030553: cGMP binding1.95E-04
11GO:0030552: cAMP binding1.95E-04
12GO:0005216: ion channel activity3.02E-04
13GO:0005524: ATP binding3.02E-04
14GO:0004012: phospholipid-translocating ATPase activity3.49E-04
15GO:0003978: UDP-glucose 4-epimerase activity3.49E-04
16GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.56E-04
17GO:0008909: isochorismate synthase activity4.56E-04
18GO:0019707: protein-cysteine S-acyltransferase activity4.56E-04
19GO:0031127: alpha-(1,2)-fucosyltransferase activity4.56E-04
20GO:0032050: clathrin heavy chain binding4.56E-04
21GO:0030551: cyclic nucleotide binding5.95E-04
22GO:0005249: voltage-gated potassium channel activity5.95E-04
23GO:0019901: protein kinase binding7.86E-04
24GO:0015152: glucose-6-phosphate transmembrane transporter activity9.85E-04
25GO:0022821: potassium ion antiporter activity9.85E-04
26GO:0001671: ATPase activator activity9.85E-04
27GO:0048531: beta-1,3-galactosyltransferase activity9.85E-04
28GO:0008728: GTP diphosphokinase activity9.85E-04
29GO:0050291: sphingosine N-acyltransferase activity9.85E-04
30GO:0047364: desulfoglucosinolate sulfotransferase activity9.85E-04
31GO:0004568: chitinase activity1.12E-03
32GO:0008559: xenobiotic-transporting ATPase activity1.29E-03
33GO:0046423: allene-oxide cyclase activity1.60E-03
34GO:0071917: triose-phosphate transmembrane transporter activity1.60E-03
35GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.60E-03
36GO:0005388: calcium-transporting ATPase activity1.68E-03
37GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.68E-03
38GO:0004842: ubiquitin-protein transferase activity1.71E-03
39GO:0005509: calcium ion binding1.80E-03
40GO:0015181: arginine transmembrane transporter activity2.32E-03
41GO:0015189: L-lysine transmembrane transporter activity2.32E-03
42GO:0017089: glycolipid transporter activity2.32E-03
43GO:0043424: protein histidine kinase binding2.91E-03
44GO:0005313: L-glutamate transmembrane transporter activity3.12E-03
45GO:0015120: phosphoglycerate transmembrane transporter activity3.12E-03
46GO:0004345: glucose-6-phosphate dehydrogenase activity3.12E-03
47GO:0051861: glycolipid binding3.12E-03
48GO:0033612: receptor serine/threonine kinase binding3.20E-03
49GO:0019706: protein-cysteine S-palmitoyltransferase activity3.20E-03
50GO:0047631: ADP-ribose diphosphatase activity4.00E-03
51GO:0005471: ATP:ADP antiporter activity4.00E-03
52GO:0004722: protein serine/threonine phosphatase activity4.27E-03
53GO:0000210: NAD+ diphosphatase activity4.95E-03
54GO:0035252: UDP-xylosyltransferase activity4.95E-03
55GO:0008519: ammonium transmembrane transporter activity4.95E-03
56GO:0004605: phosphatidate cytidylyltransferase activity4.95E-03
57GO:1990714: hydroxyproline O-galactosyltransferase activity4.95E-03
58GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides5.98E-03
59GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.98E-03
60GO:0005261: cation channel activity5.98E-03
61GO:0004197: cysteine-type endopeptidase activity6.93E-03
62GO:0043295: glutathione binding7.07E-03
63GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity7.07E-03
64GO:0005515: protein binding8.05E-03
65GO:0005544: calcium-dependent phospholipid binding8.23E-03
66GO:0004714: transmembrane receptor protein tyrosine kinase activity8.23E-03
67GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity8.37E-03
68GO:0043531: ADP binding8.48E-03
69GO:0004430: 1-phosphatidylinositol 4-kinase activity9.45E-03
70GO:0005516: calmodulin binding9.97E-03
71GO:0008417: fucosyltransferase activity1.07E-02
72GO:0004806: triglyceride lipase activity1.11E-02
73GO:0004721: phosphoprotein phosphatase activity1.11E-02
74GO:0015174: basic amino acid transmembrane transporter activity1.21E-02
75GO:0047617: acyl-CoA hydrolase activity1.21E-02
76GO:0015112: nitrate transmembrane transporter activity1.21E-02
77GO:0015238: drug transmembrane transporter activity1.30E-02
78GO:0008171: O-methyltransferase activity1.35E-02
79GO:0004672: protein kinase activity1.44E-02
80GO:0005543: phospholipid binding1.49E-02
81GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.51E-02
82GO:0015297: antiporter activity1.56E-02
83GO:0004521: endoribonuclease activity1.64E-02
84GO:0008378: galactosyltransferase activity1.64E-02
85GO:0005315: inorganic phosphate transmembrane transporter activity1.80E-02
86GO:0004364: glutathione transferase activity1.94E-02
87GO:0008061: chitin binding2.13E-02
88GO:0008146: sulfotransferase activity2.13E-02
89GO:0004970: ionotropic glutamate receptor activity2.13E-02
90GO:0005217: intracellular ligand-gated ion channel activity2.13E-02
91GO:0004190: aspartic-type endopeptidase activity2.13E-02
92GO:0030246: carbohydrate binding2.36E-02
93GO:0003954: NADH dehydrogenase activity2.48E-02
94GO:0051087: chaperone binding2.66E-02
95GO:0004707: MAP kinase activity2.84E-02
96GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.03E-02
97GO:0005451: monovalent cation:proton antiporter activity3.83E-02
98GO:0015299: solute:proton antiporter activity4.25E-02
99GO:0043565: sequence-specific DNA binding4.33E-02
100GO:0004843: thiol-dependent ubiquitin-specific protease activity4.69E-02
101GO:0016758: transferase activity, transferring hexosyl groups4.72E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane2.41E-12
2GO:0016021: integral component of membrane1.12E-06
3GO:0005901: caveola9.20E-06
4GO:0000138: Golgi trans cisterna4.56E-04
5GO:0031304: intrinsic component of mitochondrial inner membrane9.85E-04
6GO:0032580: Golgi cisterna membrane1.09E-03
7GO:0042406: extrinsic component of endoplasmic reticulum membrane1.60E-03
8GO:0008287: protein serine/threonine phosphatase complex1.60E-03
9GO:0030139: endocytic vesicle1.60E-03
10GO:0031012: extracellular matrix1.68E-03
11GO:0070062: extracellular exosome2.32E-03
12GO:0005758: mitochondrial intermembrane space2.63E-03
13GO:0005887: integral component of plasma membrane2.64E-03
14GO:0005774: vacuolar membrane3.18E-03
15GO:0005794: Golgi apparatus7.94E-03
16GO:0005740: mitochondrial envelope1.35E-02
17GO:0030125: clathrin vesicle coat1.35E-02
18GO:0000325: plant-type vacuole1.43E-02
19GO:0005578: proteinaceous extracellular matrix1.80E-02
20GO:0030176: integral component of endoplasmic reticulum membrane2.13E-02
21GO:0005769: early endosome2.30E-02
22GO:0070469: respiratory chain2.66E-02
23GO:0031225: anchored component of membrane3.03E-02
24GO:0009506: plasmodesma3.61E-02
25GO:0005770: late endosome4.04E-02
26GO:0000145: exocyst4.92E-02
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Gene type



Gene DE type