GO Enrichment Analysis of Co-expressed Genes with
AT1G55960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045176: apical protein localization | 0.00E+00 |
| 2 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 3 | GO:0000012: single strand break repair | 1.06E-04 |
| 4 | GO:0000066: mitochondrial ornithine transport | 1.06E-04 |
| 5 | GO:0050801: ion homeostasis | 1.06E-04 |
| 6 | GO:0034757: negative regulation of iron ion transport | 1.06E-04 |
| 7 | GO:0010271: regulation of chlorophyll catabolic process | 2.48E-04 |
| 8 | GO:0005992: trehalose biosynthetic process | 3.49E-04 |
| 9 | GO:0080117: secondary growth | 4.12E-04 |
| 10 | GO:0030029: actin filament-based process | 4.12E-04 |
| 11 | GO:0010447: response to acidic pH | 4.12E-04 |
| 12 | GO:0009800: cinnamic acid biosynthetic process | 5.92E-04 |
| 13 | GO:0051513: regulation of monopolar cell growth | 5.92E-04 |
| 14 | GO:0010158: abaxial cell fate specification | 9.92E-04 |
| 15 | GO:0048831: regulation of shoot system development | 1.21E-03 |
| 16 | GO:0048827: phyllome development | 1.21E-03 |
| 17 | GO:0006559: L-phenylalanine catabolic process | 1.21E-03 |
| 18 | GO:0010029: regulation of seed germination | 1.26E-03 |
| 19 | GO:0048509: regulation of meristem development | 1.45E-03 |
| 20 | GO:2000067: regulation of root morphogenesis | 1.45E-03 |
| 21 | GO:0000160: phosphorelay signal transduction system | 1.62E-03 |
| 22 | GO:0010050: vegetative phase change | 1.70E-03 |
| 23 | GO:0009850: auxin metabolic process | 1.97E-03 |
| 24 | GO:0070413: trehalose metabolism in response to stress | 1.97E-03 |
| 25 | GO:0006970: response to osmotic stress | 2.20E-03 |
| 26 | GO:0009827: plant-type cell wall modification | 2.24E-03 |
| 27 | GO:0000373: Group II intron splicing | 2.53E-03 |
| 28 | GO:0009636: response to toxic substance | 2.80E-03 |
| 29 | GO:0016571: histone methylation | 2.84E-03 |
| 30 | GO:0016573: histone acetylation | 2.84E-03 |
| 31 | GO:0010018: far-red light signaling pathway | 2.84E-03 |
| 32 | GO:0009736: cytokinin-activated signaling pathway | 3.35E-03 |
| 33 | GO:0010582: floral meristem determinacy | 3.81E-03 |
| 34 | GO:0010229: inflorescence development | 4.16E-03 |
| 35 | GO:0010540: basipetal auxin transport | 4.52E-03 |
| 36 | GO:0009266: response to temperature stimulus | 4.52E-03 |
| 37 | GO:0006302: double-strand break repair | 4.52E-03 |
| 38 | GO:0010039: response to iron ion | 4.88E-03 |
| 39 | GO:0042753: positive regulation of circadian rhythm | 5.26E-03 |
| 40 | GO:0006863: purine nucleobase transport | 5.26E-03 |
| 41 | GO:0006289: nucleotide-excision repair | 5.65E-03 |
| 42 | GO:0030150: protein import into mitochondrial matrix | 5.65E-03 |
| 43 | GO:0006338: chromatin remodeling | 5.65E-03 |
| 44 | GO:0071215: cellular response to abscisic acid stimulus | 7.30E-03 |
| 45 | GO:0070417: cellular response to cold | 8.19E-03 |
| 46 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 8.19E-03 |
| 47 | GO:0009451: RNA modification | 8.39E-03 |
| 48 | GO:0010087: phloem or xylem histogenesis | 8.64E-03 |
| 49 | GO:0009416: response to light stimulus | 8.91E-03 |
| 50 | GO:0045489: pectin biosynthetic process | 9.10E-03 |
| 51 | GO:0048544: recognition of pollen | 9.58E-03 |
| 52 | GO:0048825: cotyledon development | 1.01E-02 |
| 53 | GO:0055072: iron ion homeostasis | 1.01E-02 |
| 54 | GO:0007264: small GTPase mediated signal transduction | 1.11E-02 |
| 55 | GO:0009639: response to red or far red light | 1.21E-02 |
| 56 | GO:0009911: positive regulation of flower development | 1.37E-02 |
| 57 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 1.42E-02 |
| 58 | GO:0030244: cellulose biosynthetic process | 1.65E-02 |
| 59 | GO:0009834: plant-type secondary cell wall biogenesis | 1.77E-02 |
| 60 | GO:0007568: aging | 1.83E-02 |
| 61 | GO:0009910: negative regulation of flower development | 1.83E-02 |
| 62 | GO:0006839: mitochondrial transport | 2.14E-02 |
| 63 | GO:0006631: fatty acid metabolic process | 2.21E-02 |
| 64 | GO:0006281: DNA repair | 2.33E-02 |
| 65 | GO:0008283: cell proliferation | 2.34E-02 |
| 66 | GO:0006364: rRNA processing | 2.89E-02 |
| 67 | GO:0009585: red, far-red light phototransduction | 2.89E-02 |
| 68 | GO:0009909: regulation of flower development | 3.11E-02 |
| 69 | GO:0016569: covalent chromatin modification | 3.56E-02 |
| 70 | GO:0009738: abscisic acid-activated signaling pathway | 4.00E-02 |
| 71 | GO:0009845: seed germination | 4.61E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity | 0.00E+00 |
| 2 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.06E-04 |
| 3 | GO:0005290: L-histidine transmembrane transporter activity | 1.06E-04 |
| 4 | GO:0004805: trehalose-phosphatase activity | 1.41E-04 |
| 5 | GO:0000064: L-ornithine transmembrane transporter activity | 2.48E-04 |
| 6 | GO:0050736: O-malonyltransferase activity | 2.48E-04 |
| 7 | GO:0009884: cytokinin receptor activity | 2.48E-04 |
| 8 | GO:0005034: osmosensor activity | 4.12E-04 |
| 9 | GO:0045548: phenylalanine ammonia-lyase activity | 4.12E-04 |
| 10 | GO:0004148: dihydrolipoyl dehydrogenase activity | 4.12E-04 |
| 11 | GO:0004792: thiosulfate sulfurtransferase activity | 5.92E-04 |
| 12 | GO:0017172: cysteine dioxygenase activity | 5.92E-04 |
| 13 | GO:0015189: L-lysine transmembrane transporter activity | 5.92E-04 |
| 14 | GO:0015181: arginine transmembrane transporter activity | 5.92E-04 |
| 15 | GO:0070628: proteasome binding | 7.86E-04 |
| 16 | GO:0052793: pectin acetylesterase activity | 7.86E-04 |
| 17 | GO:0005471: ATP:ADP antiporter activity | 9.92E-04 |
| 18 | GO:0031593: polyubiquitin binding | 1.21E-03 |
| 19 | GO:0019900: kinase binding | 1.45E-03 |
| 20 | GO:0043022: ribosome binding | 1.97E-03 |
| 21 | GO:0004673: protein histidine kinase activity | 3.15E-03 |
| 22 | GO:0003690: double-stranded DNA binding | 3.46E-03 |
| 23 | GO:0000155: phosphorelay sensor kinase activity | 4.16E-03 |
| 24 | GO:0009982: pseudouridine synthase activity | 4.16E-03 |
| 25 | GO:0015266: protein channel activity | 4.16E-03 |
| 26 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 5.26E-03 |
| 27 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 5.26E-03 |
| 28 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 5.26E-03 |
| 29 | GO:0043130: ubiquitin binding | 5.65E-03 |
| 30 | GO:0043424: protein histidine kinase binding | 6.05E-03 |
| 31 | GO:0005345: purine nucleobase transmembrane transporter activity | 6.05E-03 |
| 32 | GO:0004527: exonuclease activity | 9.10E-03 |
| 33 | GO:0019901: protein kinase binding | 1.01E-02 |
| 34 | GO:0042802: identical protein binding | 1.04E-02 |
| 35 | GO:0004518: nuclease activity | 1.11E-02 |
| 36 | GO:0000156: phosphorelay response regulator activity | 1.16E-02 |
| 37 | GO:0003684: damaged DNA binding | 1.21E-02 |
| 38 | GO:0016791: phosphatase activity | 1.21E-02 |
| 39 | GO:0005200: structural constituent of cytoskeleton | 1.26E-02 |
| 40 | GO:0016413: O-acetyltransferase activity | 1.31E-02 |
| 41 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.65E-02 |
| 42 | GO:0050897: cobalt ion binding | 1.83E-02 |
| 43 | GO:0003697: single-stranded DNA binding | 1.95E-02 |
| 44 | GO:0003993: acid phosphatase activity | 2.02E-02 |
| 45 | GO:0004364: glutathione transferase activity | 2.27E-02 |
| 46 | GO:0003924: GTPase activity | 2.33E-02 |
| 47 | GO:0004519: endonuclease activity | 2.54E-02 |
| 48 | GO:0031625: ubiquitin protein ligase binding | 3.11E-02 |
| 49 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 3.33E-02 |
| 50 | GO:0016874: ligase activity | 3.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0031305: integral component of mitochondrial inner membrane | 1.97E-03 |
| 2 | GO:0048226: Casparian strip | 1.97E-03 |
| 3 | GO:0016602: CCAAT-binding factor complex | 4.16E-03 |
| 4 | GO:0009532: plastid stroma | 6.46E-03 |
| 5 | GO:0009505: plant-type cell wall | 7.45E-03 |
| 6 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 7.74E-03 |
| 7 | GO:0005770: late endosome | 9.10E-03 |
| 8 | GO:0030529: intracellular ribonucleoprotein complex | 1.37E-02 |
| 9 | GO:0005802: trans-Golgi network | 1.62E-02 |
| 10 | GO:0000151: ubiquitin ligase complex | 1.65E-02 |
| 11 | GO:0009707: chloroplast outer membrane | 1.65E-02 |
| 12 | GO:0005768: endosome | 1.91E-02 |
| 13 | GO:0005856: cytoskeleton | 2.54E-02 |
| 14 | GO:0005747: mitochondrial respiratory chain complex I | 3.33E-02 |
| 15 | GO:0010287: plastoglobule | 4.20E-02 |