Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G55910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
2GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
3GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
4GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0032515: negative regulation of phosphoprotein phosphatase activity0.00E+00
7GO:0009312: oligosaccharide biosynthetic process0.00E+00
8GO:0046865: terpenoid transport0.00E+00
9GO:0010324: membrane invagination0.00E+00
10GO:0071327: cellular response to trehalose stimulus0.00E+00
11GO:0009751: response to salicylic acid4.78E-08
12GO:0042742: defense response to bacterium4.05E-06
13GO:0071456: cellular response to hypoxia1.70E-05
14GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway3.99E-05
15GO:0051707: response to other organism4.94E-05
16GO:0010150: leaf senescence9.52E-05
17GO:0009643: photosynthetic acclimation2.05E-04
18GO:0006468: protein phosphorylation2.73E-04
19GO:0009867: jasmonic acid mediated signaling pathway2.84E-04
20GO:0031348: negative regulation of defense response2.86E-04
21GO:1900057: positive regulation of leaf senescence3.58E-04
22GO:0015760: glucose-6-phosphate transport3.92E-04
23GO:0046256: 2,4,6-trinitrotoluene catabolic process3.92E-04
24GO:1901183: positive regulation of camalexin biosynthetic process3.92E-04
25GO:0050691: regulation of defense response to virus by host3.92E-04
26GO:0032491: detection of molecule of fungal origin3.92E-04
27GO:0048508: embryonic meristem development3.92E-04
28GO:0010200: response to chitin4.45E-04
29GO:2000031: regulation of salicylic acid mediated signaling pathway5.48E-04
30GO:0010112: regulation of systemic acquired resistance6.57E-04
31GO:1900426: positive regulation of defense response to bacterium7.75E-04
32GO:0010618: aerenchyma formation8.49E-04
33GO:0080181: lateral root branching8.49E-04
34GO:0002240: response to molecule of oomycetes origin8.49E-04
35GO:0044419: interspecies interaction between organisms8.49E-04
36GO:0031349: positive regulation of defense response8.49E-04
37GO:0009945: radial axis specification8.49E-04
38GO:0010115: regulation of abscisic acid biosynthetic process8.49E-04
39GO:0015712: hexose phosphate transport8.49E-04
40GO:0015865: purine nucleotide transport8.49E-04
41GO:0051258: protein polymerization8.49E-04
42GO:0010271: regulation of chlorophyll catabolic process8.49E-04
43GO:0019725: cellular homeostasis8.49E-04
44GO:0080183: response to photooxidative stress8.49E-04
45GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.49E-04
46GO:0006904: vesicle docking involved in exocytosis8.84E-04
47GO:0009753: response to jasmonic acid1.04E-03
48GO:0006952: defense response1.15E-03
49GO:0015692: lead ion transport1.38E-03
50GO:0015695: organic cation transport1.38E-03
51GO:0010498: proteasomal protein catabolic process1.38E-03
52GO:0015714: phosphoenolpyruvate transport1.38E-03
53GO:0080168: abscisic acid transport1.38E-03
54GO:1900055: regulation of leaf senescence1.38E-03
55GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.38E-03
56GO:0006954: inflammatory response1.38E-03
57GO:0080163: regulation of protein serine/threonine phosphatase activity1.38E-03
58GO:0034051: negative regulation of plant-type hypersensitive response1.38E-03
59GO:0035436: triose phosphate transmembrane transport1.38E-03
60GO:0045836: positive regulation of meiotic nuclear division1.38E-03
61GO:0015783: GDP-fucose transport1.38E-03
62GO:0002237: response to molecule of bacterial origin1.51E-03
63GO:0009407: toxin catabolic process1.61E-03
64GO:0046902: regulation of mitochondrial membrane permeability1.99E-03
65GO:0072583: clathrin-dependent endocytosis1.99E-03
66GO:0010731: protein glutathionylation1.99E-03
67GO:0015696: ammonium transport1.99E-03
68GO:0009863: salicylic acid mediated signaling pathway2.10E-03
69GO:0080147: root hair cell development2.10E-03
70GO:2000377: regulation of reactive oxygen species metabolic process2.10E-03
71GO:0006887: exocytosis2.40E-03
72GO:0045227: capsule polysaccharide biosynthetic process2.67E-03
73GO:0072488: ammonium transmembrane transport2.67E-03
74GO:0033358: UDP-L-arabinose biosynthetic process2.67E-03
75GO:0015713: phosphoglycerate transport2.67E-03
76GO:0080142: regulation of salicylic acid biosynthetic process2.67E-03
77GO:0010109: regulation of photosynthesis2.67E-03
78GO:0060548: negative regulation of cell death2.67E-03
79GO:0009737: response to abscisic acid2.86E-03
80GO:0006012: galactose metabolic process3.04E-03
81GO:0009636: response to toxic substance3.09E-03
82GO:0006855: drug transmembrane transport3.24E-03
83GO:0006470: protein dephosphorylation3.27E-03
84GO:0031347: regulation of defense response3.40E-03
85GO:0018344: protein geranylgeranylation3.42E-03
86GO:0010225: response to UV-C3.42E-03
87GO:0045927: positive regulation of growth3.42E-03
88GO:0034052: positive regulation of plant-type hypersensitive response3.42E-03
89GO:0009229: thiamine diphosphate biosynthetic process3.42E-03
90GO:0009228: thiamine biosynthetic process4.23E-03
91GO:0033365: protein localization to organelle4.23E-03
92GO:0010337: regulation of salicylic acid metabolic process4.23E-03
93GO:0006574: valine catabolic process4.23E-03
94GO:0002238: response to molecule of fungal origin4.23E-03
95GO:0009759: indole glucosinolate biosynthetic process4.23E-03
96GO:0010942: positive regulation of cell death4.23E-03
97GO:0009749: response to glucose4.81E-03
98GO:0071470: cellular response to osmotic stress5.09E-03
99GO:0045926: negative regulation of growth5.09E-03
100GO:0009423: chorismate biosynthetic process5.09E-03
101GO:0031930: mitochondria-nucleus signaling pathway5.09E-03
102GO:0009942: longitudinal axis specification5.09E-03
103GO:0010310: regulation of hydrogen peroxide metabolic process5.09E-03
104GO:0010193: response to ozone5.15E-03
105GO:0009626: plant-type hypersensitive response5.23E-03
106GO:0009620: response to fungus5.45E-03
107GO:0007264: small GTPase mediated signal transduction5.51E-03
108GO:0043090: amino acid import6.02E-03
109GO:0071446: cellular response to salicylic acid stimulus6.02E-03
110GO:1900056: negative regulation of leaf senescence6.02E-03
111GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.02E-03
112GO:0010928: regulation of auxin mediated signaling pathway7.00E-03
113GO:0009787: regulation of abscisic acid-activated signaling pathway7.00E-03
114GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.00E-03
115GO:0009819: drought recovery7.00E-03
116GO:0031540: regulation of anthocyanin biosynthetic process7.00E-03
117GO:0080167: response to karrikin7.20E-03
118GO:0010029: regulation of seed germination7.90E-03
119GO:0010099: regulation of photomorphogenesis8.03E-03
120GO:0010120: camalexin biosynthetic process8.03E-03
121GO:0010204: defense response signaling pathway, resistance gene-independent8.03E-03
122GO:0006950: response to stress8.80E-03
123GO:0007338: single fertilization9.12E-03
124GO:0006098: pentose-phosphate shunt9.12E-03
125GO:0015780: nucleotide-sugar transport9.12E-03
126GO:0043067: regulation of programmed cell death1.03E-02
127GO:0048268: clathrin coat assembly1.03E-02
128GO:0010380: regulation of chlorophyll biosynthetic process1.03E-02
129GO:0008202: steroid metabolic process1.03E-02
130GO:0006499: N-terminal protein myristoylation1.08E-02
131GO:0009414: response to water deprivation1.08E-02
132GO:0051555: flavonol biosynthetic process1.14E-02
133GO:0009870: defense response signaling pathway, resistance gene-dependent1.14E-02
134GO:0019684: photosynthesis, light reaction1.27E-02
135GO:0009089: lysine biosynthetic process via diaminopimelate1.27E-02
136GO:0009073: aromatic amino acid family biosynthetic process1.27E-02
137GO:0009684: indoleacetic acid biosynthetic process1.27E-02
138GO:0008361: regulation of cell size1.40E-02
139GO:0012501: programmed cell death1.40E-02
140GO:0002213: defense response to insect1.40E-02
141GO:0010105: negative regulation of ethylene-activated signaling pathway1.40E-02
142GO:0000266: mitochondrial fission1.40E-02
143GO:0006897: endocytosis1.48E-02
144GO:2000028: regulation of photoperiodism, flowering1.53E-02
145GO:0018107: peptidyl-threonine phosphorylation1.53E-02
146GO:0055046: microgametogenesis1.53E-02
147GO:0009744: response to sucrose1.60E-02
148GO:0050832: defense response to fungus1.62E-02
149GO:0007275: multicellular organism development1.63E-02
150GO:0034605: cellular response to heat1.66E-02
151GO:0007034: vacuolar transport1.66E-02
152GO:0009266: response to temperature stimulus1.66E-02
153GO:0009225: nucleotide-sugar metabolic process1.81E-02
154GO:0010167: response to nitrate1.81E-02
155GO:0046688: response to copper ion1.81E-02
156GO:0000162: tryptophan biosynthetic process1.95E-02
157GO:0009409: response to cold2.02E-02
158GO:0045333: cellular respiration2.10E-02
159GO:0006825: copper ion transport2.25E-02
160GO:0009269: response to desiccation2.41E-02
161GO:0051321: meiotic cell cycle2.41E-02
162GO:0010017: red or far-red light signaling pathway2.57E-02
163GO:2000022: regulation of jasmonic acid mediated signaling pathway2.57E-02
164GO:0009625: response to insect2.73E-02
165GO:0009561: megagametogenesis2.90E-02
166GO:0009306: protein secretion2.90E-02
167GO:0016192: vesicle-mediated transport2.99E-02
168GO:0009624: response to nematode3.08E-02
169GO:0009611: response to wounding3.15E-02
170GO:0018105: peptidyl-serine phosphorylation3.17E-02
171GO:0042391: regulation of membrane potential3.25E-02
172GO:0006885: regulation of pH3.42E-02
173GO:0048544: recognition of pollen3.61E-02
174GO:0045893: positive regulation of transcription, DNA-templated3.73E-02
175GO:0002229: defense response to oomycetes3.98E-02
176GO:0016032: viral process4.17E-02
177GO:0019761: glucosinolate biosynthetic process4.17E-02
178GO:0055085: transmembrane transport4.32E-02
179GO:0007165: signal transduction4.47E-02
180GO:0009790: embryo development4.49E-02
181GO:0009567: double fertilization forming a zygote and endosperm4.56E-02
RankGO TermAdjusted P value
1GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
2GO:0004865: protein serine/threonine phosphatase inhibitor activity0.00E+00
3GO:0004107: chorismate synthase activity0.00E+00
4GO:0005212: structural constituent of eye lens0.00E+00
5GO:0050334: thiaminase activity0.00E+00
6GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
7GO:0016301: kinase activity4.17E-05
8GO:0003978: UDP-glucose 4-epimerase activity2.77E-04
9GO:0004674: protein serine/threonine kinase activity3.07E-04
10GO:0043295: glutathione binding3.58E-04
11GO:2001227: quercitrin binding3.92E-04
12GO:0004662: CAAX-protein geranylgeranyltransferase activity3.92E-04
13GO:0019707: protein-cysteine S-acyltransferase activity3.92E-04
14GO:2001147: camalexin binding3.92E-04
15GO:0010285: L,L-diaminopimelate aminotransferase activity3.92E-04
16GO:0032050: clathrin heavy chain binding3.92E-04
17GO:0047893: flavonol 3-O-glucosyltransferase activity4.48E-04
18GO:0015152: glucose-6-phosphate transmembrane transporter activity8.49E-04
19GO:0032934: sterol binding8.49E-04
20GO:0048531: beta-1,3-galactosyltransferase activity8.49E-04
21GO:0015036: disulfide oxidoreductase activity8.49E-04
22GO:0047364: desulfoglucosinolate sulfotransferase activity8.49E-04
23GO:0008559: xenobiotic-transporting ATPase activity1.04E-03
24GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.38E-03
25GO:0004324: ferredoxin-NADP+ reductase activity1.38E-03
26GO:0016531: copper chaperone activity1.38E-03
27GO:0032403: protein complex binding1.38E-03
28GO:0071917: triose-phosphate transmembrane transporter activity1.38E-03
29GO:0005457: GDP-fucose transmembrane transporter activity1.38E-03
30GO:0043424: protein histidine kinase binding2.31E-03
31GO:0015297: antiporter activity2.48E-03
32GO:0004364: glutathione transferase activity2.53E-03
33GO:0035251: UDP-glucosyltransferase activity2.54E-03
34GO:0009916: alternative oxidase activity2.67E-03
35GO:0015120: phosphoglycerate transmembrane transporter activity2.67E-03
36GO:0050373: UDP-arabinose 4-epimerase activity2.67E-03
37GO:0004834: tryptophan synthase activity2.67E-03
38GO:0005471: ATP:ADP antiporter activity3.42E-03
39GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.42E-03
40GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.84E-03
41GO:0008519: ammonium transmembrane transporter activity4.23E-03
42GO:0043565: sequence-specific DNA binding4.99E-03
43GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.09E-03
44GO:0004656: procollagen-proline 4-dioxygenase activity5.09E-03
45GO:0102425: myricetin 3-O-glucosyltransferase activity6.02E-03
46GO:0102360: daphnetin 3-O-glucosyltransferase activity6.02E-03
47GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity6.64E-03
48GO:0004033: aldo-keto reductase (NADP) activity7.00E-03
49GO:0008142: oxysterol binding8.03E-03
50GO:0008375: acetylglucosaminyltransferase activity8.34E-03
51GO:0005515: protein binding9.63E-03
52GO:0015238: drug transmembrane transporter activity1.03E-02
53GO:0004722: protein serine/threonine phosphatase activity1.09E-02
54GO:0004864: protein phosphatase inhibitor activity1.14E-02
55GO:0004713: protein tyrosine kinase activity1.14E-02
56GO:0004568: chitinase activity1.14E-02
57GO:0005545: 1-phosphatidylinositol binding1.14E-02
58GO:0005543: phospholipid binding1.27E-02
59GO:0005315: inorganic phosphate transmembrane transporter activity1.53E-02
60GO:0030553: cGMP binding1.81E-02
61GO:0008146: sulfotransferase activity1.81E-02
62GO:0030552: cAMP binding1.81E-02
63GO:0003954: NADH dehydrogenase activity2.10E-02
64GO:0004842: ubiquitin-protein transferase activity2.10E-02
65GO:0031418: L-ascorbic acid binding2.10E-02
66GO:0003700: transcription factor activity, sequence-specific DNA binding2.22E-02
67GO:0005216: ion channel activity2.25E-02
68GO:0031625: ubiquitin protein ligase binding2.40E-02
69GO:0033612: receptor serine/threonine kinase binding2.41E-02
70GO:0019706: protein-cysteine S-palmitoyltransferase activity2.41E-02
71GO:0005509: calcium ion binding2.78E-02
72GO:0005524: ATP binding2.81E-02
73GO:0080044: quercetin 7-O-glucosyltransferase activity2.82E-02
74GO:0080043: quercetin 3-O-glucosyltransferase activity2.82E-02
75GO:0015035: protein disulfide oxidoreductase activity3.17E-02
76GO:0030551: cyclic nucleotide binding3.25E-02
77GO:0005451: monovalent cation:proton antiporter activity3.25E-02
78GO:0005249: voltage-gated potassium channel activity3.25E-02
79GO:0030276: clathrin binding3.42E-02
80GO:0015299: solute:proton antiporter activity3.61E-02
81GO:0010181: FMN binding3.61E-02
82GO:0005215: transporter activity3.75E-02
83GO:0016758: transferase activity, transferring hexosyl groups3.75E-02
84GO:0004872: receptor activity3.79E-02
85GO:0016740: transferase activity4.08E-02
86GO:0015385: sodium:proton antiporter activity4.36E-02
87GO:0008483: transaminase activity4.76E-02
88GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.94E-02
RankGO TermAdjusted P value
1GO:0005901: caveola6.85E-06
2GO:0005886: plasma membrane1.97E-05
3GO:0000813: ESCRT I complex1.43E-04
4GO:0000164: protein phosphatase type 1 complex1.43E-04
5GO:0016021: integral component of membrane1.98E-04
6GO:0005953: CAAX-protein geranylgeranyltransferase complex3.92E-04
7GO:0000138: Golgi trans cisterna3.92E-04
8GO:0031304: intrinsic component of mitochondrial inner membrane8.49E-04
9GO:0031314: extrinsic component of mitochondrial inner membrane8.49E-04
10GO:0030139: endocytic vesicle1.38E-03
11GO:0070062: extracellular exosome1.99E-03
12GO:0000145: exocyst5.51E-03
13GO:0005794: Golgi apparatus6.50E-03
14GO:0000325: plant-type vacuole1.13E-02
15GO:0005740: mitochondrial envelope1.14E-02
16GO:0030125: clathrin vesicle coat1.14E-02
17GO:0005743: mitochondrial inner membrane1.17E-02
18GO:0043231: intracellular membrane-bounded organelle1.51E-02
19GO:0005795: Golgi stack1.81E-02
20GO:0005769: early endosome1.95E-02
21GO:0005758: mitochondrial intermembrane space2.10E-02
22GO:0070469: respiratory chain2.25E-02
23GO:0005737: cytoplasm2.26E-02
24GO:0005774: vacuolar membrane2.29E-02
25GO:0005741: mitochondrial outer membrane2.41E-02
26GO:0005905: clathrin-coated pit2.41E-02
27GO:0030136: clathrin-coated vesicle3.07E-02
28GO:0005770: late endosome3.42E-02
29GO:0005777: peroxisome3.73E-02
30GO:0032580: Golgi cisterna membrane4.56E-02
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Gene type



Gene DE type