GO Enrichment Analysis of Co-expressed Genes with
AT1G55480
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0009773: photosynthetic electron transport in photosystem I | 1.48E-08 |
| 3 | GO:0032544: plastid translation | 5.65E-07 |
| 4 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 3.77E-06 |
| 5 | GO:1901259: chloroplast rRNA processing | 2.61E-05 |
| 6 | GO:0015979: photosynthesis | 3.73E-05 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 7.54E-05 |
| 8 | GO:0019544: arginine catabolic process to glutamate | 8.78E-05 |
| 9 | GO:0034337: RNA folding | 8.78E-05 |
| 10 | GO:0043085: positive regulation of catalytic activity | 1.25E-04 |
| 11 | GO:0010207: photosystem II assembly | 1.91E-04 |
| 12 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.08E-04 |
| 13 | GO:0009768: photosynthesis, light harvesting in photosystem I | 2.99E-04 |
| 14 | GO:0006518: peptide metabolic process | 3.48E-04 |
| 15 | GO:0006810: transport | 3.49E-04 |
| 16 | GO:0006020: inositol metabolic process | 5.01E-04 |
| 17 | GO:0071484: cellular response to light intensity | 5.01E-04 |
| 18 | GO:0006662: glycerol ether metabolic process | 5.37E-04 |
| 19 | GO:0019464: glycine decarboxylation via glycine cleavage system | 6.66E-04 |
| 20 | GO:0045727: positive regulation of translation | 6.66E-04 |
| 21 | GO:0015994: chlorophyll metabolic process | 6.66E-04 |
| 22 | GO:0006021: inositol biosynthetic process | 6.66E-04 |
| 23 | GO:0016120: carotene biosynthetic process | 8.44E-04 |
| 24 | GO:0006828: manganese ion transport | 1.03E-03 |
| 25 | GO:0046855: inositol phosphate dephosphorylation | 1.03E-03 |
| 26 | GO:1902456: regulation of stomatal opening | 1.03E-03 |
| 27 | GO:0010190: cytochrome b6f complex assembly | 1.03E-03 |
| 28 | GO:0009955: adaxial/abaxial pattern specification | 1.23E-03 |
| 29 | GO:0006412: translation | 1.28E-03 |
| 30 | GO:0042254: ribosome biogenesis | 1.49E-03 |
| 31 | GO:0009853: photorespiration | 1.52E-03 |
| 32 | GO:0034599: cellular response to oxidative stress | 1.58E-03 |
| 33 | GO:0009642: response to light intensity | 1.66E-03 |
| 34 | GO:0010206: photosystem II repair | 2.14E-03 |
| 35 | GO:0006783: heme biosynthetic process | 2.14E-03 |
| 36 | GO:0006364: rRNA processing | 2.61E-03 |
| 37 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.65E-03 |
| 38 | GO:0006816: calcium ion transport | 2.93E-03 |
| 39 | GO:0006415: translational termination | 2.93E-03 |
| 40 | GO:0000272: polysaccharide catabolic process | 2.93E-03 |
| 41 | GO:0018119: peptidyl-cysteine S-nitrosylation | 2.93E-03 |
| 42 | GO:0006790: sulfur compound metabolic process | 3.21E-03 |
| 43 | GO:0046854: phosphatidylinositol phosphorylation | 4.10E-03 |
| 44 | GO:0061077: chaperone-mediated protein folding | 5.42E-03 |
| 45 | GO:0016226: iron-sulfur cluster assembly | 5.76E-03 |
| 46 | GO:0016117: carotenoid biosynthetic process | 6.86E-03 |
| 47 | GO:0042631: cellular response to water deprivation | 7.24E-03 |
| 48 | GO:0009658: chloroplast organization | 9.83E-03 |
| 49 | GO:0010027: thylakoid membrane organization | 1.14E-02 |
| 50 | GO:0009817: defense response to fungus, incompatible interaction | 1.38E-02 |
| 51 | GO:0018298: protein-chromophore linkage | 1.38E-02 |
| 52 | GO:0009813: flavonoid biosynthetic process | 1.43E-02 |
| 53 | GO:0045454: cell redox homeostasis | 1.46E-02 |
| 54 | GO:0010218: response to far red light | 1.48E-02 |
| 55 | GO:0009637: response to blue light | 1.63E-02 |
| 56 | GO:0032259: methylation | 1.73E-02 |
| 57 | GO:0010114: response to red light | 1.95E-02 |
| 58 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.47E-02 |
| 59 | GO:0046686: response to cadmium ion | 2.75E-02 |
| 60 | GO:0009735: response to cytokinin | 2.93E-02 |
| 61 | GO:0009740: gibberellic acid mediated signaling pathway | 2.97E-02 |
| 62 | GO:0009742: brassinosteroid mediated signaling pathway | 3.23E-02 |
| 63 | GO:0006633: fatty acid biosynthetic process | 4.28E-02 |
| 64 | GO:0040008: regulation of growth | 4.43E-02 |
| 65 | GO:0007623: circadian rhythm | 4.58E-02 |
| 66 | GO:0009739: response to gibberellin | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016631: enoyl-[acyl-carrier-protein] reductase activity | 0.00E+00 |
| 2 | GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity | 0.00E+00 |
| 3 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 4 | GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity | 0.00E+00 |
| 5 | GO:0019843: rRNA binding | 2.12E-09 |
| 6 | GO:0005528: FK506 binding | 7.18E-06 |
| 7 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 7.19E-06 |
| 8 | GO:0004853: uroporphyrinogen decarboxylase activity | 8.78E-05 |
| 9 | GO:0008047: enzyme activator activity | 1.06E-04 |
| 10 | GO:0003735: structural constituent of ribosome | 1.39E-04 |
| 11 | GO:0052832: inositol monophosphate 3-phosphatase activity | 2.08E-04 |
| 12 | GO:0008934: inositol monophosphate 1-phosphatase activity | 2.08E-04 |
| 13 | GO:0052833: inositol monophosphate 4-phosphatase activity | 2.08E-04 |
| 14 | GO:0008967: phosphoglycolate phosphatase activity | 2.08E-04 |
| 15 | GO:0018708: thiol S-methyltransferase activity | 2.08E-04 |
| 16 | GO:0047746: chlorophyllase activity | 2.08E-04 |
| 17 | GO:0010297: heteropolysaccharide binding | 2.08E-04 |
| 18 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.21E-04 |
| 19 | GO:0031409: pigment binding | 2.42E-04 |
| 20 | GO:0047134: protein-disulfide reductase activity | 4.63E-04 |
| 21 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 5.01E-04 |
| 22 | GO:0016851: magnesium chelatase activity | 5.01E-04 |
| 23 | GO:0016149: translation release factor activity, codon specific | 5.01E-04 |
| 24 | GO:0004791: thioredoxin-disulfide reductase activity | 5.76E-04 |
| 25 | GO:0048038: quinone binding | 6.59E-04 |
| 26 | GO:0008453: alanine-glyoxylate transaminase activity | 6.66E-04 |
| 27 | GO:0045430: chalcone isomerase activity | 6.66E-04 |
| 28 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 7.47E-04 |
| 29 | GO:0016168: chlorophyll binding | 9.88E-04 |
| 30 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.23E-03 |
| 31 | GO:0003747: translation release factor activity | 2.14E-03 |
| 32 | GO:0005384: manganese ion transmembrane transporter activity | 2.39E-03 |
| 33 | GO:0047372: acylglycerol lipase activity | 2.93E-03 |
| 34 | GO:0015095: magnesium ion transmembrane transporter activity | 3.50E-03 |
| 35 | GO:0031072: heat shock protein binding | 3.50E-03 |
| 36 | GO:0015035: protein disulfide oxidoreductase activity | 3.80E-03 |
| 37 | GO:0008266: poly(U) RNA binding | 3.80E-03 |
| 38 | GO:0051536: iron-sulfur cluster binding | 4.74E-03 |
| 39 | GO:0050662: coenzyme binding | 8.02E-03 |
| 40 | GO:0008168: methyltransferase activity | 9.46E-03 |
| 41 | GO:0004222: metalloendopeptidase activity | 1.48E-02 |
| 42 | GO:0009055: electron carrier activity | 1.94E-02 |
| 43 | GO:0004185: serine-type carboxypeptidase activity | 1.95E-02 |
| 44 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.06E-02 |
| 45 | GO:0016491: oxidoreductase activity | 2.23E-02 |
| 46 | GO:0051082: unfolded protein binding | 3.10E-02 |
| 47 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.71E-02 |
| 48 | GO:0030170: pyridoxal phosphate binding | 3.92E-02 |
| 49 | GO:0016787: hydrolase activity | 4.08E-02 |
| 50 | GO:0005507: copper ion binding | 4.55E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005835: fatty acid synthase complex | 0.00E+00 |
| 2 | GO:0009571: proplastid stroma | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 1.66E-35 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 1.20E-31 |
| 5 | GO:0009534: chloroplast thylakoid | 1.68E-15 |
| 6 | GO:0009941: chloroplast envelope | 6.71E-13 |
| 7 | GO:0009570: chloroplast stroma | 6.86E-13 |
| 8 | GO:0009579: thylakoid | 1.30E-12 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.71E-11 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 2.12E-09 |
| 11 | GO:0031977: thylakoid lumen | 3.64E-09 |
| 12 | GO:0005840: ribosome | 1.75E-07 |
| 13 | GO:0031969: chloroplast membrane | 2.75E-05 |
| 14 | GO:0009547: plastid ribosome | 8.78E-05 |
| 15 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.08E-04 |
| 16 | GO:0030076: light-harvesting complex | 2.16E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 2.99E-04 |
| 18 | GO:0010007: magnesium chelatase complex | 3.48E-04 |
| 19 | GO:0005960: glycine cleavage complex | 5.01E-04 |
| 20 | GO:0010287: plastoglobule | 5.31E-04 |
| 21 | GO:0019898: extrinsic component of membrane | 6.17E-04 |
| 22 | GO:0005763: mitochondrial small ribosomal subunit | 2.14E-03 |
| 23 | GO:0032040: small-subunit processome | 3.21E-03 |
| 24 | GO:0000311: plastid large ribosomal subunit | 3.21E-03 |
| 25 | GO:0030095: chloroplast photosystem II | 3.80E-03 |
| 26 | GO:0042651: thylakoid membrane | 5.07E-03 |
| 27 | GO:0015935: small ribosomal subunit | 5.42E-03 |
| 28 | GO:0009522: photosystem I | 8.02E-03 |
| 29 | GO:0010319: stromule | 1.05E-02 |
| 30 | GO:0015934: large ribosomal subunit | 1.53E-02 |
| 31 | GO:0048046: apoplast | 2.50E-02 |
| 32 | GO:0009706: chloroplast inner membrane | 3.10E-02 |
| 33 | GO:0005623: cell | 3.71E-02 |
| 34 | GO:0005615: extracellular space | 4.95E-02 |