co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55152

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
3	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
4	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
5	GO:0009661: chromoplast organization	0.00E+00
6	GO:1905157: positive regulation of photosynthesis	0.00E+00
7	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0010207: photosystem II assembly	2.27E-05
10	GO:0042549: photosystem II stabilization	6.24E-05
11	GO:0050821: protein stabilization	1.48E-04
12	GO:0080112: seed growth	1.86E-04
13	GO:0005980: glycogen catabolic process	1.86E-04
14	GO:0043953: protein transport by the Tat complex	1.86E-04
15	GO:1905039: carboxylic acid transmembrane transport	1.86E-04
16	GO:1905200: gibberellic acid transmembrane transport	1.86E-04
17	GO:0046467: membrane lipid biosynthetic process	1.86E-04
18	GO:0065002: intracellular protein transmembrane transport	1.86E-04
19	GO:0080093: regulation of photorespiration	1.86E-04
20	GO:0031998: regulation of fatty acid beta-oxidation	1.86E-04
21	GO:0006098: pentose-phosphate shunt	2.25E-04
22	GO:0009773: photosynthetic electron transport in photosystem I	3.66E-04
23	GO:0080029: cellular response to boron-containing substance levels	4.19E-04
24	GO:0006898: receptor-mediated endocytosis	4.19E-04
25	GO:0034755: iron ion transmembrane transport	4.19E-04
26	GO:0071457: cellular response to ozone	4.19E-04
27	GO:1904143: positive regulation of carotenoid biosynthetic process	4.19E-04
28	GO:0006094: gluconeogenesis	4.78E-04
29	GO:0034599: cellular response to oxidative stress	5.29E-04
30	GO:0010114: response to red light	6.89E-04
31	GO:0009768: photosynthesis, light harvesting in photosystem I	8.15E-04
32	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.77E-04
33	GO:0006168: adenine salvage	9.77E-04
34	GO:0046713: borate transport	9.77E-04
35	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.77E-04
36	GO:1902358: sulfate transmembrane transport	9.77E-04
37	GO:0006166: purine ribonucleoside salvage	9.77E-04
38	GO:0006020: inositol metabolic process	9.77E-04
39	GO:0071484: cellular response to light intensity	9.77E-04
40	GO:0009152: purine ribonucleotide biosynthetic process	9.77E-04
41	GO:0046653: tetrahydrofolate metabolic process	9.77E-04
42	GO:0009658: chloroplast organization	9.99E-04
43	GO:0010107: potassium ion import	1.29E-03
44	GO:0006021: inositol biosynthetic process	1.29E-03
45	GO:0071483: cellular response to blue light	1.29E-03
46	GO:0071486: cellular response to high light intensity	1.29E-03
47	GO:0009765: photosynthesis, light harvesting	1.29E-03
48	GO:0015994: chlorophyll metabolic process	1.29E-03
49	GO:0071493: cellular response to UV-B	1.65E-03
50	GO:0016120: carotene biosynthetic process	1.65E-03
51	GO:0055114: oxidation-reduction process	1.65E-03
52	GO:0098719: sodium ion import across plasma membrane	1.65E-03
53	GO:0006564: L-serine biosynthetic process	1.65E-03
54	GO:0009904: chloroplast accumulation movement	1.65E-03
55	GO:0000278: mitotic cell cycle	1.65E-03
56	GO:0019252: starch biosynthetic process	1.65E-03
57	GO:0006097: glyoxylate cycle	1.65E-03
58	GO:0044209: AMP salvage	1.65E-03
59	GO:0006465: signal peptide processing	1.65E-03
60	GO:0015979: photosynthesis	1.68E-03
61	GO:0032502: developmental process	1.89E-03
62	GO:0009228: thiamine biosynthetic process	2.03E-03
63	GO:0046855: inositol phosphate dephosphorylation	2.03E-03
64	GO:1902456: regulation of stomatal opening	2.03E-03
65	GO:0010190: cytochrome b6f complex assembly	2.03E-03
66	GO:0009643: photosynthetic acclimation	2.03E-03
67	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.03E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.03E-03
69	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.43E-03
70	GO:0009903: chloroplast avoidance movement	2.43E-03
71	GO:0071333: cellular response to glucose stimulus	2.43E-03
72	GO:0006810: transport	2.82E-03
73	GO:0010196: nonphotochemical quenching	2.87E-03
74	GO:0008272: sulfate transport	2.87E-03
75	GO:0009769: photosynthesis, light harvesting in photosystem II	2.87E-03
76	GO:0009645: response to low light intensity stimulus	2.87E-03
77	GO:1900056: negative regulation of leaf senescence	2.87E-03
78	GO:0018298: protein-chromophore linkage	3.31E-03
79	GO:0009642: response to light intensity	3.32E-03
80	GO:0042255: ribosome assembly	3.32E-03
81	GO:0006353: DNA-templated transcription, termination	3.32E-03
82	GO:0070413: trehalose metabolism in response to stress	3.32E-03
83	GO:0055075: potassium ion homeostasis	3.32E-03
84	GO:0052543: callose deposition in cell wall	3.32E-03
85	GO:0010218: response to far red light	3.64E-03
86	GO:0009657: plastid organization	3.80E-03
87	GO:0019430: removal of superoxide radicals	3.80E-03
88	GO:0015996: chlorophyll catabolic process	3.80E-03
89	GO:0009637: response to blue light	4.19E-03
90	GO:0009821: alkaloid biosynthetic process	4.30E-03
91	GO:0090333: regulation of stomatal closure	4.30E-03
92	GO:0010380: regulation of chlorophyll biosynthetic process	4.82E-03
93	GO:0007346: regulation of mitotic cell cycle	4.82E-03
94	GO:0051453: regulation of intracellular pH	4.82E-03
95	GO:0005982: starch metabolic process	4.82E-03
96	GO:0009641: shade avoidance	5.36E-03
97	GO:0015770: sucrose transport	5.92E-03
98	GO:0072593: reactive oxygen species metabolic process	5.92E-03
99	GO:0043085: positive regulation of catalytic activity	5.92E-03
100	GO:0006879: cellular iron ion homeostasis	5.92E-03
101	GO:0006790: sulfur compound metabolic process	6.51E-03
102	GO:0006108: malate metabolic process	7.11E-03
103	GO:0009725: response to hormone	7.11E-03
104	GO:0010143: cutin biosynthetic process	7.73E-03
105	GO:0007015: actin filament organization	7.73E-03
106	GO:0010223: secondary shoot formation	7.73E-03
107	GO:0009901: anther dehiscence	8.37E-03
108	GO:0046854: phosphatidylinositol phosphorylation	8.37E-03
109	GO:0006096: glycolytic process	8.59E-03
110	GO:0006636: unsaturated fatty acid biosynthetic process	9.03E-03
111	GO:0042023: DNA endoreduplication	9.03E-03
112	GO:0005992: trehalose biosynthetic process	9.71E-03
113	GO:0016114: terpenoid biosynthetic process	1.11E-02
114	GO:0003333: amino acid transmembrane transport	1.11E-02
115	GO:0009269: response to desiccation	1.11E-02
116	GO:0016226: iron-sulfur cluster assembly	1.19E-02
117	GO:0030433: ubiquitin-dependent ERAD pathway	1.19E-02
118	GO:0071215: cellular response to abscisic acid stimulus	1.26E-02
119	GO:0009058: biosynthetic process	1.37E-02
120	GO:0016117: carotenoid biosynthetic process	1.42E-02
121	GO:0000413: protein peptidyl-prolyl isomerization	1.50E-02
122	GO:0071472: cellular response to salt stress	1.58E-02
123	GO:0006885: regulation of pH	1.58E-02
124	GO:0006520: cellular amino acid metabolic process	1.58E-02
125	GO:0006662: glycerol ether metabolic process	1.58E-02
126	GO:0006814: sodium ion transport	1.66E-02
127	GO:0009791: post-embryonic development	1.75E-02
128	GO:0009630: gravitropism	1.92E-02
129	GO:1901657: glycosyl compound metabolic process	2.01E-02
130	GO:0009567: double fertilization forming a zygote and endosperm	2.10E-02
131	GO:0010027: thylakoid membrane organization	2.38E-02
132	GO:0016126: sterol biosynthetic process	2.38E-02
133	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.48E-02
134	GO:0042128: nitrate assimilation	2.58E-02
135	GO:0015995: chlorophyll biosynthetic process	2.67E-02
136	GO:0045893: positive regulation of transcription, DNA-templated	2.85E-02
137	GO:0009813: flavonoid biosynthetic process	2.98E-02
138	GO:0009910: negative regulation of flower development	3.19E-02
139	GO:0009853: photorespiration	3.40E-02
140	GO:0006099: tricarboxylic acid cycle	3.51E-02
141	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.56E-02
142	GO:0009744: response to sucrose	4.08E-02
143	GO:0045454: cell redox homeostasis	4.12E-02
144	GO:0000209: protein polyubiquitination	4.19E-02
145	GO:0009644: response to high light intensity	4.31E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
6	GO:0009011: starch synthase activity	1.23E-07
7	GO:0004332: fructose-bisphosphate aldolase activity	6.24E-05
8	GO:0004645: phosphorylase activity	1.86E-04
9	GO:0034256: chlorophyll(ide) b reductase activity	1.86E-04
10	GO:0015168: glycerol transmembrane transporter activity	1.86E-04
11	GO:0045486: naringenin 3-dioxygenase activity	1.86E-04
12	GO:0035671: enone reductase activity	1.86E-04
13	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.86E-04
14	GO:1905201: gibberellin transmembrane transporter activity	1.86E-04
15	GO:0008184: glycogen phosphorylase activity	1.86E-04
16	GO:0015386: potassium:proton antiporter activity	3.66E-04
17	GO:0008934: inositol monophosphate 1-phosphatase activity	4.19E-04
18	GO:0052833: inositol monophosphate 4-phosphatase activity	4.19E-04
19	GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity	4.19E-04
20	GO:0019172: glyoxalase III activity	4.19E-04
21	GO:0047746: chlorophyllase activity	4.19E-04
22	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.19E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	4.19E-04
24	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	4.19E-04
25	GO:0052832: inositol monophosphate 3-phosphatase activity	4.19E-04
26	GO:0033201: alpha-1,4-glucan synthase activity	4.19E-04
27	GO:0031409: pigment binding	6.69E-04
28	GO:0004373: glycogen (starch) synthase activity	6.84E-04
29	GO:0050734: hydroxycinnamoyltransferase activity	6.84E-04
30	GO:0004751: ribose-5-phosphate isomerase activity	6.84E-04
31	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.84E-04
32	GO:0008864: formyltetrahydrofolate deformylase activity	6.84E-04
33	GO:0003999: adenine phosphoribosyltransferase activity	9.77E-04
34	GO:0022890: inorganic cation transmembrane transporter activity	9.77E-04
35	GO:0046715: borate transmembrane transporter activity	9.77E-04
36	GO:0003727: single-stranded RNA binding	1.15E-03
37	GO:0015204: urea transmembrane transporter activity	1.29E-03
38	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.29E-03
39	GO:0004784: superoxide dismutase activity	2.03E-03
40	GO:0004462: lactoylglutathione lyase activity	2.03E-03
41	GO:0015081: sodium ion transmembrane transporter activity	2.03E-03
42	GO:0016615: malate dehydrogenase activity	2.03E-03
43	GO:0016491: oxidoreductase activity	2.27E-03
44	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.43E-03
45	GO:0030060: L-malate dehydrogenase activity	2.43E-03
46	GO:0016168: chlorophyll binding	2.69E-03
47	GO:0008135: translation factor activity, RNA binding	3.80E-03
48	GO:0008271: secondary active sulfate transmembrane transporter activity	3.80E-03
49	GO:0071949: FAD binding	4.30E-03
50	GO:0005381: iron ion transmembrane transporter activity	4.82E-03
51	GO:0015174: basic amino acid transmembrane transporter activity	4.82E-03
52	GO:0016844: strictosidine synthase activity	4.82E-03
53	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.82E-03
54	GO:0008047: enzyme activator activity	5.36E-03
55	GO:0015020: glucuronosyltransferase activity	5.36E-03
56	GO:0008515: sucrose transmembrane transporter activity	5.92E-03
57	GO:0015116: sulfate transmembrane transporter activity	6.51E-03
58	GO:0003725: double-stranded RNA binding	7.11E-03
59	GO:0004022: alcohol dehydrogenase (NAD) activity	7.11E-03
60	GO:0031072: heat shock protein binding	7.11E-03
61	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.73E-03
62	GO:0051119: sugar transmembrane transporter activity	8.37E-03
63	GO:0051536: iron-sulfur cluster binding	9.71E-03
64	GO:0031418: L-ascorbic acid binding	9.71E-03
65	GO:0043130: ubiquitin binding	9.71E-03
66	GO:0015079: potassium ion transmembrane transporter activity	1.04E-02
67	GO:0047134: protein-disulfide reductase activity	1.42E-02
68	GO:0015299: solute:proton antiporter activity	1.66E-02
69	GO:0004791: thioredoxin-disulfide reductase activity	1.66E-02
70	GO:0019901: protein kinase binding	1.75E-02
71	GO:0004872: receptor activity	1.75E-02
72	GO:0016787: hydrolase activity	1.82E-02
73	GO:0048038: quinone binding	1.83E-02
74	GO:0015385: sodium:proton antiporter activity	2.01E-02
75	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.01E-02
76	GO:0016791: phosphatase activity	2.10E-02
77	GO:0016597: amino acid binding	2.29E-02
78	GO:0015250: water channel activity	2.38E-02
79	GO:0102483: scopolin beta-glucosidase activity	2.67E-02
80	GO:0016788: hydrolase activity, acting on ester bonds	2.83E-02
81	GO:0004672: protein kinase activity	3.05E-02
82	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.08E-02
83	GO:0003746: translation elongation factor activity	3.40E-02
84	GO:0008422: beta-glucosidase activity	3.63E-02
85	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.63E-02
86	GO:0042393: histone binding	3.74E-02
87	GO:0016757: transferase activity, transferring glycosyl groups	3.95E-02
88	GO:0051537: 2 iron, 2 sulfur cluster binding	4.31E-02
89	GO:0043621: protein self-association	4.31E-02
90	GO:0015293: symporter activity	4.43E-02
91	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.55E-02
92	GO:0051287: NAD binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	1.15E-23
4	GO:0009535: chloroplast thylakoid membrane	1.29E-09
5	GO:0009941: chloroplast envelope	2.84E-09
6	GO:0009534: chloroplast thylakoid	1.22E-07
7	GO:0009570: chloroplast stroma	2.05E-07
8	GO:0010287: plastoglobule	1.68E-06
9	GO:0009579: thylakoid	1.26E-05
10	GO:0009543: chloroplast thylakoid lumen	3.17E-05
11	GO:0031969: chloroplast membrane	3.20E-05
12	GO:0031977: thylakoid lumen	5.78E-05
13	GO:0009523: photosystem II	1.40E-04
14	GO:0005787: signal peptidase complex	1.86E-04
15	GO:0031361: integral component of thylakoid membrane	1.86E-04
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.25E-04
17	GO:0030076: light-harvesting complex	6.03E-04
18	GO:0033281: TAT protein transport complex	6.84E-04
19	GO:0042651: thylakoid membrane	8.15E-04
20	GO:0009654: photosystem II oxygen evolving complex	8.15E-04
21	GO:0009517: PSII associated light-harvesting complex II	1.29E-03
22	GO:0009522: photosystem I	1.54E-03
23	GO:0019898: extrinsic component of membrane	1.65E-03
24	GO:0031982: vesicle	3.32E-03
25	GO:0009501: amyloplast	3.32E-03
26	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	3.80E-03
27	GO:0009508: plastid chromosome	7.11E-03
28	GO:0005623: cell	1.33E-02
29	GO:0048046: apoplast	1.65E-02
30	GO:0005887: integral component of plasma membrane	1.71E-02
31	GO:0009295: nucleoid	2.19E-02
32	GO:0010319: stromule	2.19E-02
33	GO:0019005: SCF ubiquitin ligase complex	2.88E-02