co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0071985: multivesicular body sorting pathway	0.00E+00
3	GO:0006903: vesicle targeting	0.00E+00
4	GO:0006216: cytidine catabolic process	0.00E+00
5	GO:0090400: stress-induced premature senescence	0.00E+00
6	GO:0080149: sucrose induced translational repression	0.00E+00
7	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
8	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
9	GO:1904250: positive regulation of age-related resistance	0.00E+00
10	GO:0010398: xylogalacturonan metabolic process	0.00E+00
11	GO:0016192: vesicle-mediated transport	4.46E-07
12	GO:0006102: isocitrate metabolic process	9.98E-06
13	GO:0006099: tricarboxylic acid cycle	1.65E-05
14	GO:0010421: hydrogen peroxide-mediated programmed cell death	3.29E-04
15	GO:0006680: glucosylceramide catabolic process	3.29E-04
16	GO:0019478: D-amino acid catabolic process	3.29E-04
17	GO:0042964: thioredoxin reduction	3.29E-04
18	GO:1900384: regulation of flavonol biosynthetic process	3.29E-04
19	GO:0015031: protein transport	3.75E-04
20	GO:0006886: intracellular protein transport	3.76E-04
21	GO:0015709: thiosulfate transport	7.18E-04
22	GO:0071422: succinate transmembrane transport	7.18E-04
23	GO:0046939: nucleotide phosphorylation	7.18E-04
24	GO:0009805: coumarin biosynthetic process	7.18E-04
25	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	7.18E-04
26	GO:0080026: response to indolebutyric acid	7.18E-04
27	GO:0051252: regulation of RNA metabolic process	7.18E-04
28	GO:0055046: microgametogenesis	1.05E-03
29	GO:0072661: protein targeting to plasma membrane	1.16E-03
30	GO:0006517: protein deglycosylation	1.16E-03
31	GO:0010272: response to silver ion	1.16E-03
32	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	1.16E-03
33	GO:0009062: fatty acid catabolic process	1.16E-03
34	GO:0061158: 3'-UTR-mediated mRNA destabilization	1.16E-03
35	GO:0006556: S-adenosylmethionine biosynthetic process	1.16E-03
36	GO:0044375: regulation of peroxisome size	1.16E-03
37	GO:0006499: N-terminal protein myristoylation	1.17E-03
38	GO:0055114: oxidation-reduction process	1.20E-03
39	GO:0007033: vacuole organization	1.32E-03
40	GO:0007031: peroxisome organization	1.32E-03
41	GO:0045454: cell redox homeostasis	1.53E-03
42	GO:0000187: activation of MAPK activity	1.67E-03
43	GO:0015729: oxaloacetate transport	1.67E-03
44	GO:0006612: protein targeting to membrane	1.67E-03
45	GO:0006893: Golgi to plasma membrane transport	1.67E-03
46	GO:0080024: indolebutyric acid metabolic process	1.67E-03
47	GO:0001676: long-chain fatty acid metabolic process	1.67E-03
48	GO:0006887: exocytosis	1.73E-03
49	GO:0046686: response to cadmium ion	1.94E-03
50	GO:0009636: response to toxic substance	2.23E-03
51	GO:1902584: positive regulation of response to water deprivation	2.24E-03
52	GO:0006621: protein retention in ER lumen	2.24E-03
53	GO:0010188: response to microbial phytotoxin	2.24E-03
54	GO:0045927: positive regulation of growth	2.87E-03
55	GO:0071423: malate transmembrane transport	2.87E-03
56	GO:0098719: sodium ion import across plasma membrane	2.87E-03
57	GO:0046283: anthocyanin-containing compound metabolic process	2.87E-03
58	GO:0006564: L-serine biosynthetic process	2.87E-03
59	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.87E-03
60	GO:0006662: glycerol ether metabolic process	3.23E-03
61	GO:0006555: methionine metabolic process	3.54E-03
62	GO:0060918: auxin transport	3.54E-03
63	GO:0045040: protein import into mitochondrial outer membrane	3.54E-03
64	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.54E-03
65	GO:0035435: phosphate ion transmembrane transport	3.54E-03
66	GO:0009972: cytidine deamination	3.54E-03
67	GO:0006623: protein targeting to vacuole	3.72E-03
68	GO:0019509: L-methionine salvage from methylthioadenosine	4.26E-03
69	GO:0030643: cellular phosphate ion homeostasis	4.26E-03
70	GO:0009082: branched-chain amino acid biosynthetic process	4.26E-03
71	GO:0034389: lipid particle organization	4.26E-03
72	GO:0017148: negative regulation of translation	4.26E-03
73	GO:0009099: valine biosynthetic process	4.26E-03
74	GO:0009554: megasporogenesis	4.26E-03
75	GO:0080113: regulation of seed growth	4.26E-03
76	GO:0030163: protein catabolic process	4.54E-03
77	GO:0009651: response to salt stress	4.67E-03
78	GO:0006744: ubiquinone biosynthetic process	5.03E-03
79	GO:0080186: developmental vegetative growth	5.03E-03
80	GO:0071669: plant-type cell wall organization or biogenesis	5.03E-03
81	GO:1900057: positive regulation of leaf senescence	5.03E-03
82	GO:0008272: sulfate transport	5.03E-03
83	GO:0050829: defense response to Gram-negative bacterium	5.03E-03
84	GO:1902074: response to salt	5.03E-03
85	GO:0016559: peroxisome fission	5.85E-03
86	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.85E-03
87	GO:0009819: drought recovery	5.85E-03
88	GO:0043068: positive regulation of programmed cell death	5.85E-03
89	GO:0006491: N-glycan processing	5.85E-03
90	GO:0009627: systemic acquired resistance	6.44E-03
91	GO:0006906: vesicle fusion	6.44E-03
92	GO:0006972: hyperosmotic response	6.71E-03
93	GO:0009699: phenylpropanoid biosynthetic process	6.71E-03
94	GO:0006002: fructose 6-phosphate metabolic process	6.71E-03
95	GO:0022900: electron transport chain	6.71E-03
96	GO:0060321: acceptance of pollen	6.71E-03
97	GO:0019430: removal of superoxide radicals	6.71E-03
98	GO:0009097: isoleucine biosynthetic process	6.71E-03
99	GO:0006888: ER to Golgi vesicle-mediated transport	6.79E-03
100	GO:0046685: response to arsenic-containing substance	7.60E-03
101	GO:0009407: toxin catabolic process	8.30E-03
102	GO:0051453: regulation of intracellular pH	8.55E-03
103	GO:0009098: leucine biosynthetic process	8.55E-03
104	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.55E-03
105	GO:0010150: leaf senescence	8.84E-03
106	GO:0000103: sulfate assimilation	9.53E-03
107	GO:0006032: chitin catabolic process	9.53E-03
108	GO:0009688: abscisic acid biosynthetic process	9.53E-03
109	GO:0043069: negative regulation of programmed cell death	9.53E-03
110	GO:0034599: cellular response to oxidative stress	9.99E-03
111	GO:0000272: polysaccharide catabolic process	1.06E-02
112	GO:0071365: cellular response to auxin stimulus	1.16E-02
113	GO:0006790: sulfur compound metabolic process	1.16E-02
114	GO:0042542: response to hydrogen peroxide	1.19E-02
115	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	1.27E-02
116	GO:0010102: lateral root morphogenesis	1.27E-02
117	GO:0006626: protein targeting to mitochondrion	1.27E-02
118	GO:0006807: nitrogen compound metabolic process	1.27E-02
119	GO:0000209: protein polyubiquitination	1.28E-02
120	GO:0046854: phosphatidylinositol phosphorylation	1.50E-02
121	GO:0010053: root epidermal cell differentiation	1.50E-02
122	GO:0031347: regulation of defense response	1.50E-02
123	GO:0007030: Golgi organization	1.50E-02
124	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.50E-02
125	GO:0090351: seedling development	1.50E-02
126	GO:0009846: pollen germination	1.55E-02
127	GO:0000162: tryptophan biosynthetic process	1.62E-02
128	GO:0034976: response to endoplasmic reticulum stress	1.62E-02
129	GO:0009860: pollen tube growth	1.69E-02
130	GO:0010073: meristem maintenance	1.87E-02
131	GO:0008299: isoprenoid biosynthetic process	1.87E-02
132	GO:0006874: cellular calcium ion homeostasis	1.87E-02
133	GO:0015992: proton transport	2.00E-02
134	GO:0019915: lipid storage	2.00E-02
135	GO:0016998: cell wall macromolecule catabolic process	2.00E-02
136	GO:0006979: response to oxidative stress	2.08E-02
137	GO:0019748: secondary metabolic process	2.14E-02
138	GO:0030245: cellulose catabolic process	2.14E-02
139	GO:0009814: defense response, incompatible interaction	2.14E-02
140	GO:0030433: ubiquitin-dependent ERAD pathway	2.14E-02
141	GO:0006730: one-carbon metabolic process	2.14E-02
142	GO:0009620: response to fungus	2.17E-02
143	GO:0010227: floral organ abscission	2.27E-02
144	GO:0009693: ethylene biosynthetic process	2.27E-02
145	GO:0009561: megagametogenesis	2.41E-02
146	GO:0009306: protein secretion	2.41E-02
147	GO:0042631: cellular response to water deprivation	2.70E-02
148	GO:0010051: xylem and phloem pattern formation	2.70E-02
149	GO:0045489: pectin biosynthetic process	2.85E-02
150	GO:0006814: sodium ion transport	3.00E-02
151	GO:0009851: auxin biosynthetic process	3.15E-02
152	GO:0009751: response to salicylic acid	3.24E-02
153	GO:0006629: lipid metabolic process	3.30E-02
154	GO:0010193: response to ozone	3.31E-02
155	GO:0006635: fatty acid beta-oxidation	3.31E-02
156	GO:1901657: glycosyl compound metabolic process	3.63E-02
157	GO:0071281: cellular response to iron ion	3.63E-02
158	GO:0009567: double fertilization forming a zygote and endosperm	3.79E-02
159	GO:0019760: glucosinolate metabolic process	3.79E-02
160	GO:0006464: cellular protein modification process	3.79E-02
161	GO:0006904: vesicle docking involved in exocytosis	3.96E-02
162	GO:0071805: potassium ion transmembrane transport	3.96E-02
163	GO:0045490: pectin catabolic process	4.10E-02
164	GO:0051607: defense response to virus	4.13E-02
165	GO:0009615: response to virus	4.30E-02
166	GO:0010029: regulation of seed germination	4.47E-02
167	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.58E-02
168	GO:0010468: regulation of gene expression	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0070577: lysine-acetylated histone binding	0.00E+00
4	GO:0047844: deoxycytidine deaminase activity	0.00E+00
5	GO:0005046: KDEL sequence binding	0.00E+00
6	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
7	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.88E-07
8	GO:0008320: protein transmembrane transporter activity	6.60E-06
9	GO:0016229: steroid dehydrogenase activity	3.29E-04
10	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.29E-04
11	GO:0070401: NADP+ binding	3.29E-04
12	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	3.29E-04
13	GO:0032266: phosphatidylinositol-3-phosphate binding	3.29E-04
14	GO:0048037: cofactor binding	3.29E-04
15	GO:0004348: glucosylceramidase activity	3.29E-04
16	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	3.29E-04
17	GO:0004791: thioredoxin-disulfide reductase activity	3.88E-04
18	GO:0052739: phosphatidylserine 1-acylhydrolase activity	7.18E-04
19	GO:0010297: heteropolysaccharide binding	7.18E-04
20	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	7.18E-04
21	GO:0004617: phosphoglycerate dehydrogenase activity	7.18E-04
22	GO:0050347: trans-octaprenyltranstransferase activity	7.18E-04
23	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	7.18E-04
24	GO:0008805: carbon-monoxide oxygenase activity	7.18E-04
25	GO:0008428: ribonuclease inhibitor activity	7.18E-04
26	GO:1990585: hydroxyproline O-arabinosyltransferase activity	7.18E-04
27	GO:0004775: succinate-CoA ligase (ADP-forming) activity	7.18E-04
28	GO:1901677: phosphate transmembrane transporter activity	7.18E-04
29	GO:0015117: thiosulfate transmembrane transporter activity	7.18E-04
30	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	7.18E-04
31	GO:0004776: succinate-CoA ligase (GDP-forming) activity	7.18E-04
32	GO:0015035: protein disulfide oxidoreductase activity	8.22E-04
33	GO:0004478: methionine adenosyltransferase activity	1.16E-03
34	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.16E-03
35	GO:0005310: dicarboxylic acid transmembrane transporter activity	1.16E-03
36	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.16E-03
37	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.16E-03
38	GO:0015141: succinate transmembrane transporter activity	1.16E-03
39	GO:0017077: oxidative phosphorylation uncoupler activity	1.67E-03
40	GO:0052655: L-valine transaminase activity	1.67E-03
41	GO:0019201: nucleotide kinase activity	1.67E-03
42	GO:0015131: oxaloacetate transmembrane transporter activity	1.67E-03
43	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.67E-03
44	GO:0052656: L-isoleucine transaminase activity	1.67E-03
45	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.67E-03
46	GO:0052654: L-leucine transaminase activity	1.67E-03
47	GO:0004659: prenyltransferase activity	2.24E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.24E-03
49	GO:0046923: ER retention sequence binding	2.24E-03
50	GO:0070628: proteasome binding	2.24E-03
51	GO:0004084: branched-chain-amino-acid transaminase activity	2.24E-03
52	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.24E-03
53	GO:0004031: aldehyde oxidase activity	2.24E-03
54	GO:0050302: indole-3-acetaldehyde oxidase activity	2.24E-03
55	GO:0047134: protein-disulfide reductase activity	2.77E-03
56	GO:0008374: O-acyltransferase activity	2.87E-03
57	GO:0008948: oxaloacetate decarboxylase activity	2.87E-03
58	GO:0004040: amidase activity	2.87E-03
59	GO:0004527: exonuclease activity	3.23E-03
60	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.54E-03
61	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.54E-03
62	GO:0035252: UDP-xylosyltransferase activity	3.54E-03
63	GO:0004126: cytidine deaminase activity	4.26E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.26E-03
65	GO:0004017: adenylate kinase activity	4.26E-03
66	GO:0102391: decanoate--CoA ligase activity	4.26E-03
67	GO:0004656: procollagen-proline 4-dioxygenase activity	4.26E-03
68	GO:0008270: zinc ion binding	4.40E-03
69	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.54E-03
70	GO:0004467: long-chain fatty acid-CoA ligase activity	5.03E-03
71	GO:0008121: ubiquinol-cytochrome-c reductase activity	5.03E-03
72	GO:0003872: 6-phosphofructokinase activity	5.03E-03
73	GO:0015140: malate transmembrane transporter activity	5.03E-03
74	GO:0043295: glutathione binding	5.03E-03
75	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	5.13E-03
76	GO:0004714: transmembrane receptor protein tyrosine kinase activity	5.85E-03
77	GO:0052747: sinapyl alcohol dehydrogenase activity	5.85E-03
78	GO:0004033: aldo-keto reductase (NADP) activity	5.85E-03
79	GO:0004708: MAP kinase kinase activity	5.85E-03
80	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	6.71E-03
81	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.52E-03
82	GO:0004568: chitinase activity	9.53E-03
83	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	9.55E-03
84	GO:0000149: SNARE binding	1.04E-02
85	GO:0004161: dimethylallyltranstransferase activity	1.06E-02
86	GO:0015386: potassium:proton antiporter activity	1.06E-02
87	GO:0015116: sulfate transmembrane transporter activity	1.16E-02
88	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.16E-02
89	GO:0004364: glutathione transferase activity	1.19E-02
90	GO:0005484: SNAP receptor activity	1.23E-02
91	GO:0031072: heat shock protein binding	1.27E-02
92	GO:0031624: ubiquitin conjugating enzyme binding	1.38E-02
93	GO:0004190: aspartic-type endopeptidase activity	1.50E-02
94	GO:0051287: NAD binding	1.50E-02
95	GO:0008061: chitin binding	1.50E-02
96	GO:0004970: ionotropic glutamate receptor activity	1.50E-02
97	GO:0005217: intracellular ligand-gated ion channel activity	1.50E-02
98	GO:0046872: metal ion binding	1.69E-02
99	GO:0016887: ATPase activity	1.70E-02
100	GO:0051536: iron-sulfur cluster binding	1.75E-02
101	GO:0031418: L-ascorbic acid binding	1.75E-02
102	GO:0043130: ubiquitin binding	1.75E-02
103	GO:0031625: ubiquitin protein ligase binding	1.85E-02
104	GO:0050660: flavin adenine dinucleotide binding	1.86E-02
105	GO:0008408: 3'-5' exonuclease activity	2.00E-02
106	GO:0004298: threonine-type endopeptidase activity	2.00E-02
107	GO:0061630: ubiquitin protein ligase activity	2.16E-02
108	GO:0008810: cellulase activity	2.27E-02
109	GO:0003727: single-stranded RNA binding	2.41E-02
110	GO:0003756: protein disulfide isomerase activity	2.41E-02
111	GO:0001085: RNA polymerase II transcription factor binding	2.85E-02
112	GO:0010181: FMN binding	3.00E-02
113	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.06E-02
114	GO:0004872: receptor activity	3.15E-02
115	GO:0004518: nuclease activity	3.47E-02
116	GO:0009055: electron carrier activity	3.59E-02
117	GO:0015385: sodium:proton antiporter activity	3.63E-02
118	GO:0016791: phosphatase activity	3.79E-02
119	GO:0008483: transaminase activity	3.96E-02
120	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.96E-02
121	GO:0016597: amino acid binding	4.13E-02
122	GO:0051213: dioxygenase activity	4.30E-02
123	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.82E-02
124	GO:0102483: scopolin beta-glucosidase activity	4.82E-02
125	GO:0004806: triglyceride lipase activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0031901: early endosome membrane	1.98E-05
2	GO:0005783: endoplasmic reticulum	4.94E-05
3	GO:0005794: Golgi apparatus	9.37E-05
4	GO:0005789: endoplasmic reticulum membrane	1.84E-04
5	GO:0005801: cis-Golgi network	2.12E-04
6	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.76E-04
7	GO:0045252: oxoglutarate dehydrogenase complex	3.29E-04
8	GO:0005829: cytosol	4.82E-04
9	GO:0032580: Golgi cisterna membrane	5.94E-04
10	GO:0000814: ESCRT II complex	7.18E-04
11	GO:0030134: ER to Golgi transport vesicle	7.18E-04
12	GO:0005886: plasma membrane	1.13E-03
13	GO:0030130: clathrin coat of trans-Golgi network vesicle	1.16E-03
14	GO:0030132: clathrin coat of coated pit	1.16E-03
15	GO:0005768: endosome	1.72E-03
16	GO:0005839: proteasome core complex	1.97E-03
17	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.56E-03
18	GO:0005945: 6-phosphofructokinase complex	2.87E-03
19	GO:0030127: COPII vesicle coat	3.54E-03
20	GO:0030173: integral component of Golgi membrane	4.26E-03
21	GO:0009986: cell surface	5.03E-03
22	GO:0005778: peroxisomal membrane	5.13E-03
23	GO:0031982: vesicle	5.85E-03
24	GO:0005788: endoplasmic reticulum lumen	6.09E-03
25	GO:0019773: proteasome core complex, alpha-subunit complex	6.71E-03
26	GO:0005779: integral component of peroxisomal membrane	6.71E-03
27	GO:0005742: mitochondrial outer membrane translocase complex	6.71E-03
28	GO:0005811: lipid particle	6.71E-03
29	GO:0031090: organelle membrane	7.60E-03
30	GO:0005777: peroxisome	7.72E-03
31	GO:0030665: clathrin-coated vesicle membrane	8.55E-03
32	GO:0017119: Golgi transport complex	9.53E-03
33	GO:0016021: integral component of membrane	1.13E-02
34	GO:0031201: SNARE complex	1.14E-02
35	GO:0005750: mitochondrial respiratory chain complex III	1.38E-02
36	GO:0005769: early endosome	1.62E-02
37	GO:0000502: proteasome complex	1.67E-02
38	GO:0005737: cytoplasm	2.17E-02
39	GO:0005770: late endosome	2.85E-02
40	GO:0005774: vacuolar membrane	3.05E-02
41	GO:0019898: extrinsic component of membrane	3.15E-02
42	GO:0009504: cell plate	3.15E-02
43	GO:0016592: mediator complex	3.47E-02
44	GO:0000145: exocyst	3.47E-02
45	GO:0071944: cell periphery	3.63E-02
46	GO:0005802: trans-Golgi network	4.15E-02
47	GO:0005667: transcription factor complex	4.65E-02