co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0010203: response to very low fluence red light stimulus	0.00E+00
4	GO:0071000: response to magnetism	0.00E+00
5	GO:0007037: vacuolar phosphate transport	0.00E+00
6	GO:0000372: Group I intron splicing	0.00E+00
7	GO:1905177: tracheary element differentiation	0.00E+00
8	GO:0006399: tRNA metabolic process	0.00E+00
9	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
10	GO:1900871: chloroplast mRNA modification	2.28E-06
11	GO:0018298: protein-chromophore linkage	4.11E-05
12	GO:0080110: sporopollenin biosynthetic process	5.56E-05
13	GO:0045038: protein import into chloroplast thylakoid membrane	5.56E-05
14	GO:0000305: response to oxygen radical	2.20E-04
15	GO:0006419: alanyl-tRNA aminoacylation	2.20E-04
16	GO:0015969: guanosine tetraphosphate metabolic process	2.20E-04
17	GO:1902025: nitrate import	2.20E-04
18	GO:1904966: positive regulation of vitamin E biosynthetic process	2.20E-04
19	GO:0000012: single strand break repair	2.20E-04
20	GO:0051775: response to redox state	2.20E-04
21	GO:0043266: regulation of potassium ion transport	2.20E-04
22	GO:0010080: regulation of floral meristem growth	2.20E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	2.20E-04
24	GO:0072387: flavin adenine dinucleotide metabolic process	2.20E-04
25	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.20E-04
26	GO:2000021: regulation of ion homeostasis	2.20E-04
27	GO:0070574: cadmium ion transmembrane transport	2.20E-04
28	GO:0051247: positive regulation of protein metabolic process	2.20E-04
29	GO:0090548: response to nitrate starvation	2.20E-04
30	GO:1902458: positive regulation of stomatal opening	2.20E-04
31	GO:2000905: negative regulation of starch metabolic process	2.20E-04
32	GO:0009658: chloroplast organization	2.63E-04
33	GO:0000373: Group II intron splicing	2.86E-04
34	GO:0009638: phototropism	3.41E-04
35	GO:0005975: carbohydrate metabolic process	4.35E-04
36	GO:0010343: singlet oxygen-mediated programmed cell death	4.90E-04
37	GO:1901529: positive regulation of anion channel activity	4.90E-04
38	GO:0060359: response to ammonium ion	4.90E-04
39	GO:0048255: mRNA stabilization	4.90E-04
40	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	4.90E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.90E-04
42	GO:0010617: circadian regulation of calcium ion oscillation	4.90E-04
43	GO:1901959: positive regulation of cutin biosynthetic process	4.90E-04
44	GO:0099402: plant organ development	4.90E-04
45	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.90E-04
46	GO:0071555: cell wall organization	5.91E-04
47	GO:0010207: photosystem II assembly	6.76E-04
48	GO:1902448: positive regulation of shade avoidance	7.98E-04
49	GO:0048586: regulation of long-day photoperiodism, flowering	7.98E-04
50	GO:0010022: meristem determinacy	7.98E-04
51	GO:1901672: positive regulation of systemic acquired resistance	7.98E-04
52	GO:0017006: protein-tetrapyrrole linkage	7.98E-04
53	GO:1904278: positive regulation of wax biosynthetic process	7.98E-04
54	GO:0010623: programmed cell death involved in cell development	7.98E-04
55	GO:0090153: regulation of sphingolipid biosynthetic process	7.98E-04
56	GO:0043157: response to cation stress	7.98E-04
57	GO:0005977: glycogen metabolic process	7.98E-04
58	GO:0010431: seed maturation	1.12E-03
59	GO:0051639: actin filament network formation	1.14E-03
60	GO:0006107: oxaloacetate metabolic process	1.14E-03
61	GO:0009584: detection of visible light	1.14E-03
62	GO:0009226: nucleotide-sugar biosynthetic process	1.14E-03
63	GO:1901332: negative regulation of lateral root development	1.14E-03
64	GO:2001141: regulation of RNA biosynthetic process	1.14E-03
65	GO:0090308: regulation of methylation-dependent chromatin silencing	1.14E-03
66	GO:0046836: glycolipid transport	1.14E-03
67	GO:0010371: regulation of gibberellin biosynthetic process	1.14E-03
68	GO:0051513: regulation of monopolar cell growth	1.14E-03
69	GO:0010584: pollen exine formation	1.44E-03
70	GO:0051764: actin crosslink formation	1.51E-03
71	GO:0048442: sepal development	1.51E-03
72	GO:0051322: anaphase	1.51E-03
73	GO:0006661: phosphatidylinositol biosynthetic process	1.51E-03
74	GO:0009765: photosynthesis, light harvesting	1.51E-03
75	GO:2000306: positive regulation of photomorphogenesis	1.51E-03
76	GO:0045723: positive regulation of fatty acid biosynthetic process	1.51E-03
77	GO:0010508: positive regulation of autophagy	1.51E-03
78	GO:0008295: spermidine biosynthetic process	1.51E-03
79	GO:0006749: glutathione metabolic process	1.51E-03
80	GO:0006734: NADH metabolic process	1.51E-03
81	GO:1902347: response to strigolactone	1.51E-03
82	GO:0010021: amylopectin biosynthetic process	1.51E-03
83	GO:0045489: pectin biosynthetic process	1.81E-03
84	GO:0016123: xanthophyll biosynthetic process	1.93E-03
85	GO:0010117: photoprotection	1.93E-03
86	GO:0046283: anthocyanin-containing compound metabolic process	1.93E-03
87	GO:0008654: phospholipid biosynthetic process	2.09E-03
88	GO:0009416: response to light stimulus	2.15E-03
89	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.38E-03
90	GO:0009959: negative gravitropism	2.38E-03
91	GO:0060918: auxin transport	2.38E-03
92	GO:1901371: regulation of leaf morphogenesis	2.38E-03
93	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.38E-03
94	GO:0032502: developmental process	2.38E-03
95	GO:0009630: gravitropism	2.38E-03
96	GO:0010310: regulation of hydrogen peroxide metabolic process	2.86E-03
97	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.86E-03
98	GO:0010076: maintenance of floral meristem identity	2.86E-03
99	GO:0017148: negative regulation of translation	2.86E-03
100	GO:0010189: vitamin E biosynthetic process	2.86E-03
101	GO:0010027: thylakoid membrane organization	3.21E-03
102	GO:0006955: immune response	3.36E-03
103	GO:0006400: tRNA modification	3.36E-03
104	GO:0051510: regulation of unidimensional cell growth	3.36E-03
105	GO:0010161: red light signaling pathway	3.36E-03
106	GO:0010029: regulation of seed germination	3.40E-03
107	GO:0048564: photosystem I assembly	3.90E-03
108	GO:0042255: ribosome assembly	3.90E-03
109	GO:0009690: cytokinin metabolic process	3.90E-03
110	GO:0006353: DNA-templated transcription, termination	3.90E-03
111	GO:0006875: cellular metal ion homeostasis	3.90E-03
112	GO:2000070: regulation of response to water deprivation	3.90E-03
113	GO:0000105: histidine biosynthetic process	3.90E-03
114	GO:0071482: cellular response to light stimulus	4.47E-03
115	GO:0015996: chlorophyll catabolic process	4.47E-03
116	GO:0007186: G-protein coupled receptor signaling pathway	4.47E-03
117	GO:0009657: plastid organization	4.47E-03
118	GO:0010218: response to far red light	4.61E-03
119	GO:0046685: response to arsenic-containing substance	5.06E-03
120	GO:0009051: pentose-phosphate shunt, oxidative branch	5.06E-03
121	GO:0010206: photosystem II repair	5.06E-03
122	GO:0009637: response to blue light	5.30E-03
123	GO:0010018: far-red light signaling pathway	5.68E-03
124	GO:1900865: chloroplast RNA modification	5.68E-03
125	GO:1900426: positive regulation of defense response to bacterium	5.68E-03
126	GO:0031627: telomeric loop formation	6.32E-03
127	GO:0009299: mRNA transcription	6.32E-03
128	GO:0048441: petal development	6.32E-03
129	GO:0009640: photomorphogenesis	6.83E-03
130	GO:0010114: response to red light	6.83E-03
131	GO:0006415: translational termination	6.98E-03
132	GO:0006352: DNA-templated transcription, initiation	6.98E-03
133	GO:0010216: maintenance of DNA methylation	6.98E-03
134	GO:0042546: cell wall biogenesis	7.11E-03
135	GO:0009644: response to high light intensity	7.39E-03
136	GO:0045037: protein import into chloroplast stroma	7.68E-03
137	GO:0010582: floral meristem determinacy	7.68E-03
138	GO:0009785: blue light signaling pathway	8.39E-03
139	GO:0006108: malate metabolic process	8.39E-03
140	GO:0009718: anthocyanin-containing compound biosynthetic process	8.39E-03
141	GO:0010075: regulation of meristem growth	8.39E-03
142	GO:0009725: response to hormone	8.39E-03
143	GO:0006302: double-strand break repair	9.13E-03
144	GO:0048440: carpel development	9.13E-03
145	GO:0009887: animal organ morphogenesis	9.13E-03
146	GO:0009585: red, far-red light phototransduction	9.22E-03
147	GO:0042753: positive regulation of circadian rhythm	1.07E-02
148	GO:0048316: seed development	1.13E-02
149	GO:0051017: actin filament bundle assembly	1.15E-02
150	GO:2000377: regulation of reactive oxygen species metabolic process	1.15E-02
151	GO:0005992: trehalose biosynthetic process	1.15E-02
152	GO:0008299: isoprenoid biosynthetic process	1.23E-02
153	GO:0009740: gibberellic acid mediated signaling pathway	1.24E-02
154	GO:0016998: cell wall macromolecule catabolic process	1.32E-02
155	GO:0030245: cellulose catabolic process	1.40E-02
156	GO:0048443: stamen development	1.58E-02
157	GO:0019722: calcium-mediated signaling	1.58E-02
158	GO:0010089: xylem development	1.58E-02
159	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.68E-02
160	GO:0000271: polysaccharide biosynthetic process	1.77E-02
161	GO:0008033: tRNA processing	1.77E-02
162	GO:0010118: stomatal movement	1.77E-02
163	GO:0010268: brassinosteroid homeostasis	1.87E-02
164	GO:0010182: sugar mediated signaling pathway	1.87E-02
165	GO:0048868: pollen tube development	1.87E-02
166	GO:0046323: glucose import	1.87E-02
167	GO:0009646: response to absence of light	1.97E-02
168	GO:0048544: recognition of pollen	1.97E-02
169	GO:0042752: regulation of circadian rhythm	1.97E-02
170	GO:0019252: starch biosynthetic process	2.07E-02
171	GO:0055072: iron ion homeostasis	2.07E-02
172	GO:0016132: brassinosteroid biosynthetic process	2.17E-02
173	GO:0010583: response to cyclopentenone	2.28E-02
174	GO:0009451: RNA modification	2.33E-02
175	GO:0016125: sterol metabolic process	2.49E-02
176	GO:0019760: glucosinolate metabolic process	2.49E-02
177	GO:0009639: response to red or far red light	2.49E-02
178	GO:0006464: cellular protein modification process	2.49E-02
179	GO:0007267: cell-cell signaling	2.60E-02
180	GO:0000910: cytokinesis	2.71E-02
181	GO:0015995: chlorophyll biosynthetic process	3.17E-02
182	GO:0010411: xyloglucan metabolic process	3.17E-02
183	GO:0006499: N-terminal protein myristoylation	3.66E-02
184	GO:0009407: toxin catabolic process	3.66E-02
185	GO:0016051: carbohydrate biosynthetic process	4.03E-02
186	GO:0006099: tricarboxylic acid cycle	4.16E-02
187	GO:0055085: transmembrane transport	4.33E-02
188	GO:0030001: metal ion transport	4.43E-02
189	GO:0006839: mitochondrial transport	4.43E-02
190	GO:0046686: response to cadmium ion	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0010276: phytol kinase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0042834: peptidoglycan binding	2.20E-04
6	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.20E-04
7	GO:0004813: alanine-tRNA ligase activity	2.20E-04
8	GO:0008158: hedgehog receptor activity	2.20E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.20E-04
10	GO:0008746: NAD(P)+ transhydrogenase activity	2.20E-04
11	GO:0031516: far-red light photoreceptor activity	2.20E-04
12	GO:0003879: ATP phosphoribosyltransferase activity	2.20E-04
13	GO:0004766: spermidine synthase activity	4.90E-04
14	GO:0019156: isoamylase activity	4.90E-04
15	GO:0048531: beta-1,3-galactosyltransferase activity	4.90E-04
16	GO:0008728: GTP diphosphokinase activity	4.90E-04
17	GO:0017118: lipoyltransferase activity	4.90E-04
18	GO:0004362: glutathione-disulfide reductase activity	4.90E-04
19	GO:0009883: red or far-red light photoreceptor activity	4.90E-04
20	GO:0043425: bHLH transcription factor binding	4.90E-04
21	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.76E-04
22	GO:0003913: DNA photolyase activity	7.98E-04
23	GO:0004148: dihydrolipoyl dehydrogenase activity	7.98E-04
24	GO:0008020: G-protein coupled photoreceptor activity	7.98E-04
25	GO:0070402: NADPH binding	7.98E-04
26	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	9.12E-04
27	GO:0042802: identical protein binding	1.06E-03
28	GO:0017089: glycolipid transporter activity	1.14E-03
29	GO:0005354: galactose transmembrane transporter activity	1.14E-03
30	GO:0015086: cadmium ion transmembrane transporter activity	1.14E-03
31	GO:0016149: translation release factor activity, codon specific	1.14E-03
32	GO:0009882: blue light photoreceptor activity	1.14E-03
33	GO:0017057: 6-phosphogluconolactonase activity	1.14E-03
34	GO:0003690: double-stranded DNA binding	1.40E-03
35	GO:0051861: glycolipid binding	1.51E-03
36	GO:0016987: sigma factor activity	1.51E-03
37	GO:0052793: pectin acetylesterase activity	1.51E-03
38	GO:0043495: protein anchor	1.51E-03
39	GO:0042277: peptide binding	1.51E-03
40	GO:0001053: plastid sigma factor activity	1.51E-03
41	GO:0050662: coenzyme binding	1.95E-03
42	GO:0004605: phosphatidate cytidylyltransferase activity	2.38E-03
43	GO:0004556: alpha-amylase activity	2.38E-03
44	GO:0004462: lactoylglutathione lyase activity	2.38E-03
45	GO:0016615: malate dehydrogenase activity	2.38E-03
46	GO:0008200: ion channel inhibitor activity	2.38E-03
47	GO:0030060: L-malate dehydrogenase activity	2.86E-03
48	GO:0009881: photoreceptor activity	3.36E-03
49	GO:0019899: enzyme binding	3.36E-03
50	GO:0015103: inorganic anion transmembrane transporter activity	3.36E-03
51	GO:0043022: ribosome binding	3.90E-03
52	GO:0004222: metalloendopeptidase activity	4.61E-03
53	GO:0071949: FAD binding	5.06E-03
54	GO:0003747: translation release factor activity	5.06E-03
55	GO:0004743: pyruvate kinase activity	5.68E-03
56	GO:0030955: potassium ion binding	5.68E-03
57	GO:0004673: protein histidine kinase activity	6.32E-03
58	GO:0004805: trehalose-phosphatase activity	6.32E-03
59	GO:0003691: double-stranded telomeric DNA binding	6.98E-03
60	GO:0000976: transcription regulatory region sequence-specific DNA binding	7.68E-03
61	GO:0000049: tRNA binding	7.68E-03
62	GO:0008081: phosphoric diester hydrolase activity	8.39E-03
63	GO:0031072: heat shock protein binding	8.39E-03
64	GO:0000155: phosphorelay sensor kinase activity	8.39E-03
65	GO:0005345: purine nucleobase transmembrane transporter activity	1.23E-02
66	GO:0004871: signal transducer activity	1.28E-02
67	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.40E-02
68	GO:0004672: protein kinase activity	1.44E-02
69	GO:0008810: cellulase activity	1.49E-02
70	GO:0022891: substrate-specific transmembrane transporter activity	1.49E-02
71	GO:0003727: single-stranded RNA binding	1.58E-02
72	GO:0004527: exonuclease activity	1.87E-02
73	GO:0046873: metal ion transmembrane transporter activity	1.87E-02
74	GO:0016853: isomerase activity	1.97E-02
75	GO:0005355: glucose transmembrane transporter activity	1.97E-02
76	GO:0015144: carbohydrate transmembrane transporter activity	1.98E-02
77	GO:0019901: protein kinase binding	2.07E-02
78	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.12E-02
79	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.17E-02
80	GO:0005351: sugar:proton symporter activity	2.23E-02
81	GO:0051015: actin filament binding	2.38E-02
82	GO:0016597: amino acid binding	2.71E-02
83	GO:0016168: chlorophyll binding	2.94E-02
84	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.17E-02
85	GO:0008236: serine-type peptidase activity	3.29E-02
86	GO:0000287: magnesium ion binding	3.46E-02
87	GO:0030145: manganese ion binding	3.78E-02
88	GO:0050897: cobalt ion binding	3.78E-02
89	GO:0003697: single-stranded DNA binding	4.03E-02
90	GO:0050660: flavin adenine dinucleotide binding	4.07E-02
91	GO:0003993: acid phosphatase activity	4.16E-02
92	GO:0050661: NADP binding	4.43E-02
93	GO:0030246: carbohydrate binding	4.65E-02
94	GO:0004364: glutathione transferase activity	4.69E-02
95	GO:0003723: RNA binding	4.70E-02
96	GO:0004185: serine-type carboxypeptidase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.90E-10
3	GO:0016604: nuclear body	3.41E-04
4	GO:0080085: signal recognition particle, chloroplast targeting	4.90E-04
5	GO:0009528: plastid inner membrane	7.98E-04
6	GO:0016605: PML body	7.98E-04
7	GO:0009570: chloroplast stroma	8.29E-04
8	GO:0009505: plant-type cell wall	9.71E-04
9	GO:0042651: thylakoid membrane	1.02E-03
10	GO:0009532: plastid stroma	1.12E-03
11	GO:0046658: anchored component of plasma membrane	1.13E-03
12	GO:0032432: actin filament bundle	1.14E-03
13	GO:0031225: anchored component of membrane	1.26E-03
14	GO:0009527: plastid outer membrane	1.51E-03
15	GO:0009705: plant-type vacuole membrane	4.18E-03
16	GO:0000783: nuclear telomere cap complex	4.47E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.47E-03
18	GO:0005720: nuclear heterochromatin	5.06E-03
19	GO:0005884: actin filament	6.98E-03
20	GO:0009574: preprophase band	8.39E-03
21	GO:0005578: proteinaceous extracellular matrix	8.39E-03
22	GO:0009535: chloroplast thylakoid membrane	1.03E-02
23	GO:0009941: chloroplast envelope	1.68E-02
24	GO:0009523: photosystem II	2.07E-02
25	GO:0005773: vacuole	2.17E-02
26	GO:0010319: stromule	2.60E-02
27	GO:0030529: intracellular ribonucleoprotein complex	2.82E-02
28	GO:0009707: chloroplast outer membrane	3.41E-02
29	GO:0000151: ubiquitin ligase complex	3.41E-02
30	GO:0031969: chloroplast membrane	4.36E-02
31	GO:0031977: thylakoid lumen	4.56E-02