co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54575

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902009: positive regulation of toxin transport	0.00E+00
2	GO:0051553: flavone biosynthetic process	0.00E+00
3	GO:2000068: regulation of defense response to insect	0.00E+00
4	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
5	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
6	GO:0052386: cell wall thickening	0.00E+00
7	GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress	0.00E+00
8	GO:0018063: cytochrome c-heme linkage	0.00E+00
9	GO:0006605: protein targeting	9.31E-05
10	GO:0046246: terpene biosynthetic process	1.37E-04
11	GO:0051090: regulation of sequence-specific DNA binding transcription factor activity	1.37E-04
12	GO:0008202: steroid metabolic process	1.73E-04
13	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.16E-04
14	GO:0006568: tryptophan metabolic process	3.16E-04
15	GO:0071398: cellular response to fatty acid	5.20E-04
16	GO:0032504: multicellular organism reproduction	5.20E-04
17	GO:0010476: gibberellin mediated signaling pathway	5.20E-04
18	GO:0010325: raffinose family oligosaccharide biosynthetic process	5.20E-04
19	GO:0009410: response to xenobiotic stimulus	5.20E-04
20	GO:0080163: regulation of protein serine/threonine phosphatase activity	5.20E-04
21	GO:0009611: response to wounding	6.98E-04
22	GO:0080024: indolebutyric acid metabolic process	7.44E-04
23	GO:0001676: long-chain fatty acid metabolic process	7.44E-04
24	GO:0010116: positive regulation of abscisic acid biosynthetic process	7.44E-04
25	GO:0070301: cellular response to hydrogen peroxide	7.44E-04
26	GO:0002239: response to oomycetes	7.44E-04
27	GO:0009963: positive regulation of flavonoid biosynthetic process	7.44E-04
28	GO:0009620: response to fungus	8.18E-04
29	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	9.85E-04
30	GO:0006621: protein retention in ER lumen	9.85E-04
31	GO:0015867: ATP transport	9.85E-04
32	GO:1901002: positive regulation of response to salt stress	9.85E-04
33	GO:0006886: intracellular protein transport	9.99E-04
34	GO:0006623: protein targeting to vacuole	1.10E-03
35	GO:0008152: metabolic process	1.51E-03
36	GO:0006014: D-ribose metabolic process	1.53E-03
37	GO:0009759: indole glucosinolate biosynthetic process	1.53E-03
38	GO:0015866: ADP transport	1.53E-03
39	GO:0010256: endomembrane system organization	1.53E-03
40	GO:1900425: negative regulation of defense response to bacterium	1.53E-03
41	GO:0048444: floral organ morphogenesis	1.83E-03
42	GO:0030643: cellular phosphate ion homeostasis	1.83E-03
43	GO:0016311: dephosphorylation	2.07E-03
44	GO:1902074: response to salt	2.15E-03
45	GO:0010044: response to aluminum ion	2.15E-03
46	GO:1900057: positive regulation of leaf senescence	2.15E-03
47	GO:0009617: response to bacterium	2.26E-03
48	GO:0009813: flavonoid biosynthetic process	2.29E-03
49	GO:0009737: response to abscisic acid	2.51E-03
50	GO:0017004: cytochrome complex assembly	2.85E-03
51	GO:0010417: glucuronoxylan biosynthetic process	2.85E-03
52	GO:0009056: catabolic process	3.22E-03
53	GO:0009835: fruit ripening	3.22E-03
54	GO:0007338: single fertilization	3.22E-03
55	GO:0006631: fatty acid metabolic process	3.26E-03
56	GO:0015031: protein transport	3.50E-03
57	GO:0051707: response to other organism	3.54E-03
58	GO:0009636: response to toxic substance	3.97E-03
59	GO:0010629: negative regulation of gene expression	4.00E-03
60	GO:0051555: flavonol biosynthetic process	4.00E-03
61	GO:0055114: oxidation-reduction process	4.38E-03
62	GO:0071365: cellular response to auxin stimulus	4.85E-03
63	GO:0045037: protein import into chloroplast stroma	4.85E-03
64	GO:2000012: regulation of auxin polar transport	5.30E-03
65	GO:0010102: lateral root morphogenesis	5.30E-03
66	GO:0002237: response to molecule of bacterial origin	5.76E-03
67	GO:0009651: response to salt stress	6.13E-03
68	GO:0090351: seedling development	6.23E-03
69	GO:0009863: salicylic acid mediated signaling pathway	7.22E-03
70	GO:0030150: protein import into mitochondrial matrix	7.22E-03
71	GO:0009269: response to desiccation	8.26E-03
72	GO:0016114: terpenoid biosynthetic process	8.26E-03
73	GO:0031348: negative regulation of defense response	8.79E-03
74	GO:0030245: cellulose catabolic process	8.79E-03
75	GO:0009814: defense response, incompatible interaction	8.79E-03
76	GO:0016226: iron-sulfur cluster assembly	8.79E-03
77	GO:0009693: ethylene biosynthetic process	9.35E-03
78	GO:0010051: xylem and phloem pattern formation	1.11E-02
79	GO:0045489: pectin biosynthetic process	1.17E-02
80	GO:0006520: cellular amino acid metabolic process	1.17E-02
81	GO:0048544: recognition of pollen	1.23E-02
82	GO:0019252: starch biosynthetic process	1.29E-02
83	GO:0006891: intra-Golgi vesicle-mediated transport	1.36E-02
84	GO:0006635: fatty acid beta-oxidation	1.36E-02
85	GO:0002229: defense response to oomycetes	1.36E-02
86	GO:0010193: response to ozone	1.36E-02
87	GO:0000302: response to reactive oxygen species	1.36E-02
88	GO:0009567: double fertilization forming a zygote and endosperm	1.55E-02
89	GO:0006464: cellular protein modification process	1.55E-02
90	GO:0006508: proteolysis	1.62E-02
91	GO:0051607: defense response to virus	1.69E-02
92	GO:0010029: regulation of seed germination	1.83E-02
93	GO:0009816: defense response to bacterium, incompatible interaction	1.83E-02
94	GO:0010043: response to zinc ion	2.36E-02
95	GO:0016192: vesicle-mediated transport	2.37E-02
96	GO:0044550: secondary metabolite biosynthetic process	2.45E-02
97	GO:0007275: multicellular organism development	2.50E-02
98	GO:0016051: carbohydrate biosynthetic process	2.51E-02
99	GO:0009867: jasmonic acid mediated signaling pathway	2.51E-02
100	GO:0006099: tricarboxylic acid cycle	2.60E-02
101	GO:0006839: mitochondrial transport	2.76E-02
102	GO:0042542: response to hydrogen peroxide	2.93E-02
103	GO:0006869: lipid transport	2.96E-02
104	GO:0006468: protein phosphorylation	3.03E-02
105	GO:0016042: lipid catabolic process	3.23E-02
106	GO:0009751: response to salicylic acid	3.28E-02
107	GO:0009414: response to water deprivation	3.30E-02
108	GO:0006855: drug transmembrane transport	3.36E-02
109	GO:0042742: defense response to bacterium	3.39E-02
110	GO:0048364: root development	3.47E-02
111	GO:0009753: response to jasmonic acid	3.56E-02
112	GO:0009809: lignin biosynthetic process	3.72E-02
113	GO:0006857: oligopeptide transport	3.91E-02
114	GO:0006952: defense response	4.35E-02
115	GO:0009734: auxin-activated signaling pathway	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0005046: KDEL sequence binding	0.00E+00
2	GO:0097008: (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity	0.00E+00
3	GO:0033759: flavone synthase activity	0.00E+00
4	GO:0097007: 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity	0.00E+00
5	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
6	GO:0102391: decanoate--CoA ligase activity	5.36E-05
7	GO:0004467: long-chain fatty acid-CoA ligase activity	7.18E-05
8	GO:0047893: flavonol 3-O-glucosyltransferase activity	9.31E-05
9	GO:0008142: oxysterol binding	1.17E-04
10	GO:0004630: phospholipase D activity	1.17E-04
11	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	1.17E-04
12	GO:0016920: pyroglutamyl-peptidase activity	1.37E-04
13	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.37E-04
14	GO:0016229: steroid dehydrogenase activity	1.37E-04
15	GO:0010179: IAA-Ala conjugate hydrolase activity	1.37E-04
16	GO:0070401: NADP+ binding	1.37E-04
17	GO:0030247: polysaccharide binding	1.81E-04
18	GO:0015036: disulfide oxidoreductase activity	3.16E-04
19	GO:0010331: gibberellin binding	3.16E-04
20	GO:0032934: sterol binding	3.16E-04
21	GO:0050736: O-malonyltransferase activity	3.16E-04
22	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	5.20E-04
23	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.20E-04
24	GO:0035251: UDP-glucosyltransferase activity	5.96E-04
25	GO:0008810: cellulase activity	7.07E-04
26	GO:0016656: monodehydroascorbate reductase (NADH) activity	7.44E-04
27	GO:0008106: alcohol dehydrogenase (NADP+) activity	7.44E-04
28	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	9.85E-04
29	GO:0046923: ER retention sequence binding	9.85E-04
30	GO:0016758: transferase activity, transferring hexosyl groups	1.17E-03
31	GO:0018685: alkane 1-monooxygenase activity	1.25E-03
32	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	1.25E-03
33	GO:0005347: ATP transmembrane transporter activity	1.83E-03
34	GO:0015217: ADP transmembrane transporter activity	1.83E-03
35	GO:0004747: ribokinase activity	1.83E-03
36	GO:0005509: calcium ion binding	1.99E-03
37	GO:0008194: UDP-glycosyltransferase activity	2.08E-03
38	GO:0008320: protein transmembrane transporter activity	2.15E-03
39	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.15E-03
40	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.15E-03
41	GO:0004033: aldo-keto reductase (NADP) activity	2.49E-03
42	GO:0008865: fructokinase activity	2.49E-03
43	GO:0052747: sinapyl alcohol dehydrogenase activity	2.49E-03
44	GO:0003993: acid phosphatase activity	2.87E-03
45	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	3.22E-03
46	GO:0004864: protein phosphatase inhibitor activity	4.00E-03
47	GO:0016740: transferase activity	4.22E-03
48	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.85E-03
49	GO:0031072: heat shock protein binding	5.30E-03
50	GO:0005524: ATP binding	5.78E-03
51	GO:0080043: quercetin 3-O-glucosyltransferase activity	6.17E-03
52	GO:0080044: quercetin 7-O-glucosyltransferase activity	6.17E-03
53	GO:0003712: transcription cofactor activity	6.23E-03
54	GO:0051536: iron-sulfur cluster binding	7.22E-03
55	GO:0031418: L-ascorbic acid binding	7.22E-03
56	GO:0001046: core promoter sequence-specific DNA binding	7.22E-03
57	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.79E-03
58	GO:0005215: transporter activity	1.06E-02
59	GO:0016301: kinase activity	1.08E-02
60	GO:0015297: antiporter activity	1.12E-02
61	GO:0010181: FMN binding	1.23E-02
62	GO:0004872: receptor activity	1.29E-02
63	GO:0016791: phosphatase activity	1.55E-02
64	GO:0008483: transaminase activity	1.62E-02
65	GO:0008237: metallopeptidase activity	1.62E-02
66	GO:0051213: dioxygenase activity	1.76E-02
67	GO:0020037: heme binding	1.81E-02
68	GO:0004806: triglyceride lipase activity	1.98E-02
69	GO:0019825: oxygen binding	2.19E-02
70	GO:0015238: drug transmembrane transporter activity	2.20E-02
71	GO:0008233: peptidase activity	2.21E-02
72	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.51E-02
73	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.68E-02
74	GO:0051539: 4 iron, 4 sulfur cluster binding	2.76E-02
75	GO:0004722: protein serine/threonine phosphatase activity	2.96E-02
76	GO:0035091: phosphatidylinositol binding	3.19E-02
77	GO:0005198: structural molecule activity	3.27E-02
78	GO:0005506: iron ion binding	3.33E-02
79	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.29E-02
80	GO:0016874: ligase activity	4.58E-02
81	GO:0022857: transmembrane transporter activity	4.58E-02
82	GO:0051082: unfolded protein binding	4.78E-02
83	GO:0016746: transferase activity, transferring acyl groups	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0017119: Golgi transport complex	4.34E-06
2	GO:0005801: cis-Golgi network	5.36E-05
3	GO:0045252: oxoglutarate dehydrogenase complex	1.37E-04
4	GO:0031314: extrinsic component of mitochondrial inner membrane	3.16E-04
5	GO:0030134: ER to Golgi transport vesicle	3.16E-04
6	GO:0016021: integral component of membrane	3.99E-04
7	GO:0030658: transport vesicle membrane	7.44E-04
8	GO:0005783: endoplasmic reticulum	1.16E-03
9	GO:0005743: mitochondrial inner membrane	1.17E-03
10	GO:0005623: cell	1.25E-03
11	GO:0000164: protein phosphatase type 1 complex	1.25E-03
12	GO:0009986: cell surface	2.15E-03
13	GO:0005779: integral component of peroxisomal membrane	2.85E-03
14	GO:0030665: clathrin-coated vesicle membrane	3.60E-03
15	GO:0005886: plasma membrane	4.86E-03
16	GO:0005794: Golgi apparatus	5.27E-03
17	GO:0043231: intracellular membrane-bounded organelle	7.65E-03
18	GO:0031410: cytoplasmic vesicle	8.79E-03
19	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.92E-03
20	GO:0009705: plant-type vacuole membrane	1.17E-02
21	GO:0019898: extrinsic component of membrane	1.29E-02
22	GO:0005777: peroxisome	1.67E-02
23	GO:0005789: endoplasmic reticulum membrane	1.72E-02
24	GO:0005788: endoplasmic reticulum lumen	1.83E-02
25	GO:0005774: vacuolar membrane	1.99E-02
26	GO:0000151: ubiquitin ligase complex	2.12E-02
27	GO:0016020: membrane	2.24E-02
28	GO:0000325: plant-type vacuole	2.36E-02
29	GO:0031902: late endosome membrane	2.84E-02
30	GO:0005622: intracellular	2.89E-02
31	GO:0005829: cytosol	2.96E-02
32	GO:0005773: vacuole	4.05E-02
33	GO:0005737: cytoplasm	4.32E-02
34	GO:0005887: integral component of plasma membrane	4.50E-02
35	GO:0009706: chloroplast inner membrane	4.78E-02