GO Enrichment Analysis of Co-expressed Genes with
AT1G54500
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 2 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0016117: carotenoid biosynthetic process | 6.04E-05 |
| 5 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 1.54E-04 |
| 6 | GO:0048657: anther wall tapetum cell differentiation | 1.54E-04 |
| 7 | GO:0000012: single strand break repair | 1.54E-04 |
| 8 | GO:0042547: cell wall modification involved in multidimensional cell growth | 1.54E-04 |
| 9 | GO:0043087: regulation of GTPase activity | 1.54E-04 |
| 10 | GO:0006436: tryptophanyl-tRNA aminoacylation | 1.54E-04 |
| 11 | GO:0000066: mitochondrial ornithine transport | 1.54E-04 |
| 12 | GO:0000373: Group II intron splicing | 1.70E-04 |
| 13 | GO:0009793: embryo development ending in seed dormancy | 3.44E-04 |
| 14 | GO:0006435: threonyl-tRNA aminoacylation | 3.51E-04 |
| 15 | GO:0090351: seedling development | 4.65E-04 |
| 16 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 5.75E-04 |
| 17 | GO:0006696: ergosterol biosynthetic process | 5.75E-04 |
| 18 | GO:0006508: proteolysis | 6.95E-04 |
| 19 | GO:0042989: sequestering of actin monomers | 8.23E-04 |
| 20 | GO:0010306: rhamnogalacturonan II biosynthetic process | 8.23E-04 |
| 21 | GO:1901332: negative regulation of lateral root development | 8.23E-04 |
| 22 | GO:2001141: regulation of RNA biosynthetic process | 8.23E-04 |
| 23 | GO:0051781: positive regulation of cell division | 1.09E-03 |
| 24 | GO:0051322: anaphase | 1.09E-03 |
| 25 | GO:0006552: leucine catabolic process | 1.09E-03 |
| 26 | GO:0010268: brassinosteroid homeostasis | 1.11E-03 |
| 27 | GO:0016132: brassinosteroid biosynthetic process | 1.36E-03 |
| 28 | GO:0016123: xanthophyll biosynthetic process | 1.38E-03 |
| 29 | GO:0010158: abaxial cell fate specification | 1.38E-03 |
| 30 | GO:0030041: actin filament polymerization | 1.38E-03 |
| 31 | GO:0010236: plastoquinone biosynthetic process | 1.38E-03 |
| 32 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.38E-03 |
| 33 | GO:0031365: N-terminal protein amino acid modification | 1.38E-03 |
| 34 | GO:1902183: regulation of shoot apical meristem development | 1.38E-03 |
| 35 | GO:0016125: sterol metabolic process | 1.64E-03 |
| 36 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.70E-03 |
| 37 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.39E-03 |
| 38 | GO:0022904: respiratory electron transport chain | 2.39E-03 |
| 39 | GO:0051510: regulation of unidimensional cell growth | 2.39E-03 |
| 40 | GO:0048564: photosystem I assembly | 2.77E-03 |
| 41 | GO:0042255: ribosome assembly | 2.77E-03 |
| 42 | GO:0006353: DNA-templated transcription, termination | 2.77E-03 |
| 43 | GO:0071482: cellular response to light stimulus | 3.16E-03 |
| 44 | GO:0022900: electron transport chain | 3.16E-03 |
| 45 | GO:0032544: plastid translation | 3.16E-03 |
| 46 | GO:0009821: alkaloid biosynthetic process | 3.58E-03 |
| 47 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 3.58E-03 |
| 48 | GO:0010206: photosystem II repair | 3.58E-03 |
| 49 | GO:2000024: regulation of leaf development | 3.58E-03 |
| 50 | GO:0009658: chloroplast organization | 3.83E-03 |
| 51 | GO:0006259: DNA metabolic process | 4.46E-03 |
| 52 | GO:0006535: cysteine biosynthetic process from serine | 4.46E-03 |
| 53 | GO:0006265: DNA topological change | 4.92E-03 |
| 54 | GO:0006352: DNA-templated transcription, initiation | 4.92E-03 |
| 55 | GO:0045037: protein import into chloroplast stroma | 5.41E-03 |
| 56 | GO:0006094: gluconeogenesis | 5.91E-03 |
| 57 | GO:0009767: photosynthetic electron transport chain | 5.91E-03 |
| 58 | GO:0006302: double-strand break repair | 6.42E-03 |
| 59 | GO:0010207: photosystem II assembly | 6.42E-03 |
| 60 | GO:0019344: cysteine biosynthetic process | 8.05E-03 |
| 61 | GO:0007010: cytoskeleton organization | 8.05E-03 |
| 62 | GO:0009944: polarity specification of adaxial/abaxial axis | 8.05E-03 |
| 63 | GO:0006289: nucleotide-excision repair | 8.05E-03 |
| 64 | GO:0006418: tRNA aminoacylation for protein translation | 8.63E-03 |
| 65 | GO:0010073: meristem maintenance | 8.63E-03 |
| 66 | GO:0006825: copper ion transport | 8.63E-03 |
| 67 | GO:0048511: rhythmic process | 9.22E-03 |
| 68 | GO:0015992: proton transport | 9.22E-03 |
| 69 | GO:0035428: hexose transmembrane transport | 9.82E-03 |
| 70 | GO:0006730: one-carbon metabolic process | 9.82E-03 |
| 71 | GO:0009814: defense response, incompatible interaction | 9.82E-03 |
| 72 | GO:0080092: regulation of pollen tube growth | 9.82E-03 |
| 73 | GO:0010584: pollen exine formation | 1.11E-02 |
| 74 | GO:0019722: calcium-mediated signaling | 1.11E-02 |
| 75 | GO:0008033: tRNA processing | 1.24E-02 |
| 76 | GO:0010154: fruit development | 1.31E-02 |
| 77 | GO:0048868: pollen tube development | 1.31E-02 |
| 78 | GO:0046323: glucose import | 1.31E-02 |
| 79 | GO:0007059: chromosome segregation | 1.37E-02 |
| 80 | GO:0009646: response to absence of light | 1.37E-02 |
| 81 | GO:0045490: pectin catabolic process | 1.37E-02 |
| 82 | GO:0007264: small GTPase mediated signal transduction | 1.59E-02 |
| 83 | GO:0032502: developmental process | 1.59E-02 |
| 84 | GO:0007267: cell-cell signaling | 1.81E-02 |
| 85 | GO:0000910: cytokinesis | 1.89E-02 |
| 86 | GO:0016126: sterol biosynthetic process | 1.97E-02 |
| 87 | GO:0009911: positive regulation of flower development | 1.97E-02 |
| 88 | GO:0042254: ribosome biogenesis | 2.17E-02 |
| 89 | GO:0016311: dephosphorylation | 2.29E-02 |
| 90 | GO:0009860: pollen tube growth | 2.29E-02 |
| 91 | GO:0009817: defense response to fungus, incompatible interaction | 2.38E-02 |
| 92 | GO:0048481: plant ovule development | 2.38E-02 |
| 93 | GO:0010311: lateral root formation | 2.46E-02 |
| 94 | GO:0080167: response to karrikin | 2.64E-02 |
| 95 | GO:0048527: lateral root development | 2.64E-02 |
| 96 | GO:0007568: aging | 2.64E-02 |
| 97 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.73E-02 |
| 98 | GO:0009853: photorespiration | 2.81E-02 |
| 99 | GO:0009637: response to blue light | 2.81E-02 |
| 100 | GO:0006839: mitochondrial transport | 3.09E-02 |
| 101 | GO:0010114: response to red light | 3.37E-02 |
| 102 | GO:0009664: plant-type cell wall organization | 3.96E-02 |
| 103 | GO:0006397: mRNA processing | 4.05E-02 |
| 104 | GO:0006364: rRNA processing | 4.17E-02 |
| 105 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.27E-02 |
| 106 | GO:0010224: response to UV-B | 4.27E-02 |
| 107 | GO:0006417: regulation of translation | 4.48E-02 |
| 108 | GO:0048316: seed development | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 4 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 5 | GO:0010356: homogentisate geranylgeranyltransferase activity | 0.00E+00 |
| 6 | GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity | 0.00E+00 |
| 7 | GO:0004561: alpha-N-acetylglucosaminidase activity | 0.00E+00 |
| 8 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 9 | GO:0004174: electron-transferring-flavoprotein dehydrogenase activity | 0.00E+00 |
| 10 | GO:0010357: homogentisate solanesyltransferase activity | 0.00E+00 |
| 11 | GO:0050613: delta14-sterol reductase activity | 0.00E+00 |
| 12 | GO:0048039: ubiquinone binding | 0.00E+00 |
| 13 | GO:0010355: homogentisate farnesyltransferase activity | 0.00E+00 |
| 14 | GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor | 0.00E+00 |
| 15 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 1.54E-04 |
| 16 | GO:0005290: L-histidine transmembrane transporter activity | 1.54E-04 |
| 17 | GO:0004008: copper-exporting ATPase activity | 1.54E-04 |
| 18 | GO:0051996: squalene synthase activity | 1.54E-04 |
| 19 | GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity | 1.54E-04 |
| 20 | GO:0004830: tryptophan-tRNA ligase activity | 1.54E-04 |
| 21 | GO:0000064: L-ornithine transmembrane transporter activity | 3.51E-04 |
| 22 | GO:0004829: threonine-tRNA ligase activity | 3.51E-04 |
| 23 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.51E-04 |
| 24 | GO:0050017: L-3-cyanoalanine synthase activity | 3.51E-04 |
| 25 | GO:0010291: carotene beta-ring hydroxylase activity | 3.51E-04 |
| 26 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 3.51E-04 |
| 27 | GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups | 5.75E-04 |
| 28 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 5.75E-04 |
| 29 | GO:0016805: dipeptidase activity | 5.75E-04 |
| 30 | GO:0015189: L-lysine transmembrane transporter activity | 8.23E-04 |
| 31 | GO:0015181: arginine transmembrane transporter activity | 8.23E-04 |
| 32 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 8.23E-04 |
| 33 | GO:0030570: pectate lyase activity | 8.23E-04 |
| 34 | GO:0009678: hydrogen-translocating pyrophosphatase activity | 8.23E-04 |
| 35 | GO:0016987: sigma factor activity | 1.09E-03 |
| 36 | GO:0070628: proteasome binding | 1.09E-03 |
| 37 | GO:0001053: plastid sigma factor activity | 1.09E-03 |
| 38 | GO:0003785: actin monomer binding | 1.38E-03 |
| 39 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 1.38E-03 |
| 40 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.52E-03 |
| 41 | GO:0031593: polyubiquitin binding | 1.70E-03 |
| 42 | GO:0004124: cysteine synthase activity | 2.03E-03 |
| 43 | GO:0008235: metalloexopeptidase activity | 2.39E-03 |
| 44 | GO:0004427: inorganic diphosphatase activity | 2.39E-03 |
| 45 | GO:0008312: 7S RNA binding | 2.77E-03 |
| 46 | GO:0043022: ribosome binding | 2.77E-03 |
| 47 | GO:0005375: copper ion transmembrane transporter activity | 3.16E-03 |
| 48 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 3.16E-03 |
| 49 | GO:0016844: strictosidine synthase activity | 4.01E-03 |
| 50 | GO:0004161: dimethylallyltranstransferase activity | 4.92E-03 |
| 51 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 4.92E-03 |
| 52 | GO:0004177: aminopeptidase activity | 4.92E-03 |
| 53 | GO:0003690: double-stranded DNA binding | 5.75E-03 |
| 54 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 5.91E-03 |
| 55 | GO:0031072: heat shock protein binding | 5.91E-03 |
| 56 | GO:0043130: ubiquitin binding | 8.05E-03 |
| 57 | GO:0004176: ATP-dependent peptidase activity | 9.22E-03 |
| 58 | GO:0016829: lyase activity | 1.07E-02 |
| 59 | GO:0004252: serine-type endopeptidase activity | 1.10E-02 |
| 60 | GO:0003727: single-stranded RNA binding | 1.11E-02 |
| 61 | GO:0004812: aminoacyl-tRNA ligase activity | 1.17E-02 |
| 62 | GO:0046872: metal ion binding | 1.21E-02 |
| 63 | GO:0008536: Ran GTPase binding | 1.31E-02 |
| 64 | GO:0004527: exonuclease activity | 1.31E-02 |
| 65 | GO:0010181: FMN binding | 1.37E-02 |
| 66 | GO:0005355: glucose transmembrane transporter activity | 1.37E-02 |
| 67 | GO:0048038: quinone binding | 1.52E-02 |
| 68 | GO:0004518: nuclease activity | 1.59E-02 |
| 69 | GO:0003684: damaged DNA binding | 1.74E-02 |
| 70 | GO:0008237: metallopeptidase activity | 1.81E-02 |
| 71 | GO:0020037: heme binding | 2.29E-02 |
| 72 | GO:0008236: serine-type peptidase activity | 2.29E-02 |
| 73 | GO:0005096: GTPase activator activity | 2.46E-02 |
| 74 | GO:0004497: monooxygenase activity | 2.64E-02 |
| 75 | GO:0019825: oxygen binding | 2.67E-02 |
| 76 | GO:0003697: single-stranded DNA binding | 2.81E-02 |
| 77 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.09E-02 |
| 78 | GO:0005525: GTP binding | 3.19E-02 |
| 79 | GO:0004871: signal transducer activity | 3.31E-02 |
| 80 | GO:0004185: serine-type carboxypeptidase activity | 3.37E-02 |
| 81 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.56E-02 |
| 82 | GO:0035091: phosphatidylinositol binding | 3.56E-02 |
| 83 | GO:0003924: GTPase activity | 3.89E-02 |
| 84 | GO:0005506: iron ion binding | 4.04E-02 |
| 85 | GO:0003723: RNA binding | 4.12E-02 |
| 86 | GO:0009055: electron carrier activity | 4.16E-02 |
| 87 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.17E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0017133: mitochondrial electron transfer flavoprotein complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.93E-13 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 3.16E-04 |
| 4 | GO:0080085: signal recognition particle, chloroplast targeting | 3.51E-04 |
| 5 | GO:0009574: preprophase band | 3.67E-04 |
| 6 | GO:0009570: chloroplast stroma | 5.18E-04 |
| 7 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 1.09E-03 |
| 8 | GO:0030529: intracellular ribonucleoprotein complex | 1.96E-03 |
| 9 | GO:0031305: integral component of mitochondrial inner membrane | 2.77E-03 |
| 10 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.16E-03 |
| 11 | GO:0009536: plastid | 4.35E-03 |
| 12 | GO:0005740: mitochondrial envelope | 4.46E-03 |
| 13 | GO:0016324: apical plasma membrane | 4.46E-03 |
| 14 | GO:0031969: chloroplast membrane | 5.03E-03 |
| 15 | GO:0000311: plastid large ribosomal subunit | 5.41E-03 |
| 16 | GO:0005578: proteinaceous extracellular matrix | 5.91E-03 |
| 17 | GO:0005938: cell cortex | 5.91E-03 |
| 18 | GO:0030176: integral component of endoplasmic reticulum membrane | 6.95E-03 |
| 19 | GO:0042651: thylakoid membrane | 8.63E-03 |
| 20 | GO:0009532: plastid stroma | 9.22E-03 |
| 21 | GO:0015629: actin cytoskeleton | 1.04E-02 |
| 22 | GO:0009941: chloroplast envelope | 1.61E-02 |
| 23 | GO:0009505: plant-type cell wall | 1.62E-02 |
| 24 | GO:0009295: nucleoid | 1.81E-02 |
| 25 | GO:0005773: vacuole | 2.02E-02 |
| 26 | GO:0009579: thylakoid | 2.14E-02 |
| 27 | GO:0015934: large ribosomal subunit | 2.64E-02 |
| 28 | GO:0031225: anchored component of membrane | 2.99E-02 |
| 29 | GO:0031977: thylakoid lumen | 3.18E-02 |
| 30 | GO:0005856: cytoskeleton | 3.66E-02 |
| 31 | GO:0005840: ribosome | 4.37E-02 |