co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019685: photosynthesis, dark reaction	0.00E+00
2	GO:0044154: histone H3-K14 acetylation	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0046460: neutral lipid biosynthetic process	0.00E+00
7	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
8	GO:0000372: Group I intron splicing	0.00E+00
9	GO:0043972: histone H3-K23 acetylation	0.00E+00
10	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
11	GO:0006114: glycerol biosynthetic process	0.00E+00
12	GO:0033528: S-methylmethionine cycle	0.00E+00
13	GO:0000373: Group II intron splicing	3.62E-05
14	GO:0051322: anaphase	1.05E-04
15	GO:0051510: regulation of unidimensional cell growth	4.03E-04
16	GO:0034757: negative regulation of iron ion transport	4.23E-04
17	GO:0051171: regulation of nitrogen compound metabolic process	4.23E-04
18	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.23E-04
19	GO:0043971: histone H3-K18 acetylation	4.23E-04
20	GO:0043489: RNA stabilization	4.23E-04
21	GO:0048657: anther wall tapetum cell differentiation	4.23E-04
22	GO:0000012: single strand break repair	4.23E-04
23	GO:0042547: cell wall modification involved in multidimensional cell growth	4.23E-04
24	GO:0072387: flavin adenine dinucleotide metabolic process	4.23E-04
25	GO:0043087: regulation of GTPase activity	4.23E-04
26	GO:0043609: regulation of carbon utilization	4.23E-04
27	GO:0006436: tryptophanyl-tRNA aminoacylation	4.23E-04
28	GO:0000066: mitochondrial ornithine transport	4.23E-04
29	GO:0009793: embryo development ending in seed dormancy	6.97E-04
30	GO:0010343: singlet oxygen-mediated programmed cell death	9.16E-04
31	GO:1901529: positive regulation of anion channel activity	9.16E-04
32	GO:0080005: photosystem stoichiometry adjustment	9.16E-04
33	GO:0010617: circadian regulation of calcium ion oscillation	9.16E-04
34	GO:0010271: regulation of chlorophyll catabolic process	9.16E-04
35	GO:0006435: threonyl-tRNA aminoacylation	9.16E-04
36	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	9.16E-04
37	GO:0099402: plant organ development	9.16E-04
38	GO:0001736: establishment of planar polarity	9.16E-04
39	GO:1902448: positive regulation of shade avoidance	1.49E-03
40	GO:0080117: secondary growth	1.49E-03
41	GO:0006000: fructose metabolic process	1.49E-03
42	GO:0006013: mannose metabolic process	1.49E-03
43	GO:1901672: positive regulation of systemic acquired resistance	1.49E-03
44	GO:0001578: microtubule bundle formation	1.49E-03
45	GO:0045493: xylan catabolic process	1.49E-03
46	GO:0006094: gluconeogenesis	1.51E-03
47	GO:0006508: proteolysis	1.60E-03
48	GO:0010207: photosystem II assembly	1.70E-03
49	GO:0090351: seedling development	1.91E-03
50	GO:0051639: actin filament network formation	2.15E-03
51	GO:0009800: cinnamic acid biosynthetic process	2.15E-03
52	GO:0010306: rhamnogalacturonan II biosynthetic process	2.15E-03
53	GO:0010255: glucose mediated signaling pathway	2.15E-03
54	GO:1901332: negative regulation of lateral root development	2.15E-03
55	GO:0042989: sequestering of actin monomers	2.15E-03
56	GO:0006168: adenine salvage	2.15E-03
57	GO:2001141: regulation of RNA biosynthetic process	2.15E-03
58	GO:0006166: purine ribonucleoside salvage	2.15E-03
59	GO:0051764: actin crosslink formation	2.89E-03
60	GO:0015846: polyamine transport	2.89E-03
61	GO:0006021: inositol biosynthetic process	2.89E-03
62	GO:0007020: microtubule nucleation	2.89E-03
63	GO:1902347: response to strigolactone	2.89E-03
64	GO:0051781: positive regulation of cell division	2.89E-03
65	GO:0009416: response to light stimulus	3.59E-03
66	GO:0010158: abaxial cell fate specification	3.71E-03
67	GO:0010584: pollen exine formation	3.71E-03
68	GO:0006465: signal peptide processing	3.71E-03
69	GO:0080110: sporopollenin biosynthetic process	3.71E-03
70	GO:0046785: microtubule polymerization	3.71E-03
71	GO:0030041: actin filament polymerization	3.71E-03
72	GO:0010117: photoprotection	3.71E-03
73	GO:0046283: anthocyanin-containing compound metabolic process	3.71E-03
74	GO:0031365: N-terminal protein amino acid modification	3.71E-03
75	GO:0044209: AMP salvage	3.71E-03
76	GO:0060918: auxin transport	4.59E-03
77	GO:0048831: regulation of shoot system development	4.59E-03
78	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.59E-03
79	GO:1901371: regulation of leaf morphogenesis	4.59E-03
80	GO:0006559: L-phenylalanine catabolic process	4.59E-03
81	GO:0048827: phyllome development	4.59E-03
82	GO:0010268: brassinosteroid homeostasis	4.69E-03
83	GO:0048868: pollen tube development	4.69E-03
84	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.53E-03
85	GO:0034389: lipid particle organization	5.53E-03
86	GO:0048509: regulation of meristem development	5.53E-03
87	GO:0010310: regulation of hydrogen peroxide metabolic process	5.53E-03
88	GO:0016132: brassinosteroid biosynthetic process	5.80E-03
89	GO:0007264: small GTPase mediated signal transduction	6.20E-03
90	GO:0048528: post-embryonic root development	6.54E-03
91	GO:0010050: vegetative phase change	6.54E-03
92	GO:0009610: response to symbiotic fungus	6.54E-03
93	GO:0016125: sterol metabolic process	7.04E-03
94	GO:0048564: photosystem I assembly	7.60E-03
95	GO:0009850: auxin metabolic process	7.60E-03
96	GO:0006353: DNA-templated transcription, termination	7.60E-03
97	GO:0009704: de-etiolation	7.60E-03
98	GO:0070413: trehalose metabolism in response to stress	7.60E-03
99	GO:0000105: histidine biosynthetic process	7.60E-03
100	GO:0000910: cytokinesis	7.94E-03
101	GO:0009911: positive regulation of flower development	8.41E-03
102	GO:0006002: fructose 6-phosphate metabolic process	8.73E-03
103	GO:0071482: cellular response to light stimulus	8.73E-03
104	GO:0022900: electron transport chain	8.73E-03
105	GO:0009827: plant-type cell wall modification	8.73E-03
106	GO:0009657: plastid organization	8.73E-03
107	GO:0032544: plastid translation	8.73E-03
108	GO:0044030: regulation of DNA methylation	8.73E-03
109	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.08E-03
110	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.92E-03
111	GO:0006098: pentose-phosphate shunt	9.92E-03
112	GO:0010411: xyloglucan metabolic process	9.92E-03
113	GO:0019432: triglyceride biosynthetic process	9.92E-03
114	GO:0018298: protein-chromophore linkage	1.10E-02
115	GO:0009638: phototropism	1.12E-02
116	GO:0009086: methionine biosynthetic process	1.12E-02
117	GO:0010380: regulation of chlorophyll biosynthetic process	1.12E-02
118	GO:0008202: steroid metabolic process	1.12E-02
119	GO:1900426: positive regulation of defense response to bacterium	1.12E-02
120	GO:0000160: phosphorelay signal transduction system	1.16E-02
121	GO:0006535: cysteine biosynthetic process from serine	1.24E-02
122	GO:0048829: root cap development	1.24E-02
123	GO:0006259: DNA metabolic process	1.24E-02
124	GO:0006265: DNA topological change	1.38E-02
125	GO:0006352: DNA-templated transcription, initiation	1.38E-02
126	GO:0006415: translational termination	1.38E-02
127	GO:0009750: response to fructose	1.38E-02
128	GO:0048765: root hair cell differentiation	1.38E-02
129	GO:0009451: RNA modification	1.47E-02
130	GO:0006790: sulfur compound metabolic process	1.52E-02
131	GO:0045037: protein import into chloroplast stroma	1.52E-02
132	GO:0010582: floral meristem determinacy	1.52E-02
133	GO:0009785: blue light signaling pathway	1.66E-02
134	GO:0010229: inflorescence development	1.66E-02
135	GO:0010075: regulation of meristem growth	1.66E-02
136	GO:0009767: photosynthetic electron transport chain	1.66E-02
137	GO:0006302: double-strand break repair	1.81E-02
138	GO:0010020: chloroplast fission	1.81E-02
139	GO:0010540: basipetal auxin transport	1.81E-02
140	GO:0080188: RNA-directed DNA methylation	1.96E-02
141	GO:0046854: phosphatidylinositol phosphorylation	1.96E-02
142	GO:0006863: purine nucleobase transport	2.12E-02
143	GO:0006071: glycerol metabolic process	2.12E-02
144	GO:0019344: cysteine biosynthetic process	2.29E-02
145	GO:0030150: protein import into mitochondrial matrix	2.29E-02
146	GO:0007010: cytoskeleton organization	2.29E-02
147	GO:0051017: actin filament bundle assembly	2.29E-02
148	GO:0006289: nucleotide-excision repair	2.29E-02
149	GO:0010187: negative regulation of seed germination	2.29E-02
150	GO:2000377: regulation of reactive oxygen species metabolic process	2.29E-02
151	GO:0005992: trehalose biosynthetic process	2.29E-02
152	GO:0006364: rRNA processing	2.44E-02
153	GO:0009736: cytokinin-activated signaling pathway	2.44E-02
154	GO:0006418: tRNA aminoacylation for protein translation	2.45E-02
155	GO:0043622: cortical microtubule organization	2.45E-02
156	GO:0010073: meristem maintenance	2.45E-02
157	GO:0006825: copper ion transport	2.45E-02
158	GO:0009658: chloroplast organization	2.48E-02
159	GO:0051603: proteolysis involved in cellular protein catabolic process	2.52E-02
160	GO:0003333: amino acid transmembrane transport	2.62E-02
161	GO:0015992: proton transport	2.62E-02
162	GO:0048511: rhythmic process	2.62E-02
163	GO:0006417: regulation of translation	2.70E-02
164	GO:0009814: defense response, incompatible interaction	2.80E-02
165	GO:0016226: iron-sulfur cluster assembly	2.80E-02
166	GO:0035428: hexose transmembrane transport	2.80E-02
167	GO:0006730: one-carbon metabolic process	2.80E-02
168	GO:0080092: regulation of pollen tube growth	2.80E-02
169	GO:0071215: cellular response to abscisic acid stimulus	2.98E-02
170	GO:0048316: seed development	2.98E-02
171	GO:0080167: response to karrikin	3.25E-02
172	GO:0009740: gibberellic acid mediated signaling pathway	3.27E-02
173	GO:0070417: cellular response to cold	3.34E-02
174	GO:0009624: response to nematode	3.47E-02
175	GO:0046777: protein autophosphorylation	3.53E-02
176	GO:0010087: phloem or xylem histogenesis	3.54E-02
177	GO:0010118: stomatal movement	3.54E-02
178	GO:0009958: positive gravitropism	3.73E-02
179	GO:0045489: pectin biosynthetic process	3.73E-02
180	GO:0046323: glucose import	3.73E-02
181	GO:0009646: response to absence of light	3.93E-02
182	GO:0042752: regulation of circadian rhythm	3.93E-02
183	GO:0007059: chromosome segregation	3.93E-02
184	GO:0048825: cotyledon development	4.13E-02
185	GO:0009749: response to glucose	4.13E-02
186	GO:0042744: hydrogen peroxide catabolic process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
4	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0019808: polyamine binding	0.00E+00
7	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
8	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
9	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
10	GO:0004401: histidinol-phosphatase activity	0.00E+00
11	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
12	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
13	GO:0005227: calcium activated cation channel activity	4.23E-04
14	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.23E-04
15	GO:0005290: L-histidine transmembrane transporter activity	4.23E-04
16	GO:0004008: copper-exporting ATPase activity	4.23E-04
17	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	4.23E-04
18	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.23E-04
19	GO:0004830: tryptophan-tRNA ligase activity	4.23E-04
20	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.23E-04
21	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	9.16E-04
22	GO:0004047: aminomethyltransferase activity	9.16E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	9.16E-04
24	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	9.16E-04
25	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	9.16E-04
26	GO:0008934: inositol monophosphate 1-phosphatase activity	9.16E-04
27	GO:0004829: threonine-tRNA ligase activity	9.16E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	9.16E-04
29	GO:0000064: L-ornithine transmembrane transporter activity	9.16E-04
30	GO:0009884: cytokinin receptor activity	9.16E-04
31	GO:0050017: L-3-cyanoalanine synthase activity	9.16E-04
32	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	9.16E-04
33	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.16E-03
34	GO:0045548: phenylalanine ammonia-lyase activity	1.49E-03
35	GO:0003913: DNA photolyase activity	1.49E-03
36	GO:0032549: ribonucleoside binding	1.49E-03
37	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.49E-03
38	GO:0004848: ureidoglycolate hydrolase activity	1.49E-03
39	GO:0004148: dihydrolipoyl dehydrogenase activity	1.49E-03
40	GO:0016805: dipeptidase activity	1.49E-03
41	GO:0005034: osmosensor activity	1.49E-03
42	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.49E-03
43	GO:0004222: metalloendopeptidase activity	1.87E-03
44	GO:0015189: L-lysine transmembrane transporter activity	2.15E-03
45	GO:0000254: C-4 methylsterol oxidase activity	2.15E-03
46	GO:0009678: hydrogen-translocating pyrophosphatase activity	2.15E-03
47	GO:0003999: adenine phosphoribosyltransferase activity	2.15E-03
48	GO:0015181: arginine transmembrane transporter activity	2.15E-03
49	GO:0017172: cysteine dioxygenase activity	2.15E-03
50	GO:0009882: blue light photoreceptor activity	2.15E-03
51	GO:0004176: ATP-dependent peptidase activity	2.86E-03
52	GO:0016987: sigma factor activity	2.89E-03
53	GO:0010328: auxin influx transmembrane transporter activity	2.89E-03
54	GO:0070628: proteasome binding	2.89E-03
55	GO:0010385: double-stranded methylated DNA binding	2.89E-03
56	GO:0009044: xylan 1,4-beta-xylosidase activity	2.89E-03
57	GO:0046556: alpha-L-arabinofuranosidase activity	2.89E-03
58	GO:0001053: plastid sigma factor activity	2.89E-03
59	GO:0010011: auxin binding	2.89E-03
60	GO:0030570: pectate lyase activity	3.42E-03
61	GO:0003785: actin monomer binding	3.71E-03
62	GO:0005471: ATP:ADP antiporter activity	3.71E-03
63	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.71E-03
64	GO:0046872: metal ion binding	3.97E-03
65	GO:0003924: GTPase activity	4.31E-03
66	GO:0004332: fructose-bisphosphate aldolase activity	4.59E-03
67	GO:0031593: polyubiquitin binding	4.59E-03
68	GO:2001070: starch binding	4.59E-03
69	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.53E-03
70	GO:0004144: diacylglycerol O-acyltransferase activity	5.53E-03
71	GO:0004656: procollagen-proline 4-dioxygenase activity	5.53E-03
72	GO:0019900: kinase binding	5.53E-03
73	GO:0004559: alpha-mannosidase activity	5.53E-03
74	GO:0004124: cysteine synthase activity	5.53E-03
75	GO:0004518: nuclease activity	6.20E-03
76	GO:0008235: metalloexopeptidase activity	6.54E-03
77	GO:0004427: inorganic diphosphatase activity	6.54E-03
78	GO:0009881: photoreceptor activity	6.54E-03
79	GO:0019899: enzyme binding	6.54E-03
80	GO:0008237: metallopeptidase activity	7.48E-03
81	GO:0043022: ribosome binding	7.60E-03
82	GO:0008142: oxysterol binding	8.73E-03
83	GO:0005375: copper ion transmembrane transporter activity	8.73E-03
84	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	8.73E-03
85	GO:0071949: FAD binding	9.92E-03
86	GO:0003747: translation release factor activity	9.92E-03
87	GO:0015020: glucuronosyltransferase activity	1.24E-02
88	GO:0004673: protein histidine kinase activity	1.24E-02
89	GO:0004805: trehalose-phosphatase activity	1.24E-02
90	GO:0008327: methyl-CpG binding	1.38E-02
91	GO:0001054: RNA polymerase I activity	1.38E-02
92	GO:0004177: aminopeptidase activity	1.38E-02
93	GO:0015266: protein channel activity	1.66E-02
94	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.66E-02
95	GO:0000155: phosphorelay sensor kinase activity	1.66E-02
96	GO:0008266: poly(U) RNA binding	1.81E-02
97	GO:0004185: serine-type carboxypeptidase activity	1.81E-02
98	GO:0042802: identical protein binding	1.94E-02
99	GO:0043621: protein self-association	1.95E-02
100	GO:0030246: carbohydrate binding	1.95E-02
101	GO:0035091: phosphatidylinositol binding	1.95E-02
102	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.12E-02
103	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.12E-02
104	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.12E-02
105	GO:0003723: RNA binding	2.27E-02
106	GO:0043130: ubiquitin binding	2.29E-02
107	GO:0031418: L-ascorbic acid binding	2.29E-02
108	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.44E-02
109	GO:0043424: protein histidine kinase binding	2.45E-02
110	GO:0005345: purine nucleobase transmembrane transporter activity	2.45E-02
111	GO:0005525: GTP binding	2.74E-02
112	GO:0004672: protein kinase activity	2.94E-02
113	GO:0004812: aminoacyl-tRNA ligase activity	3.34E-02
114	GO:0004402: histone acetyltransferase activity	3.54E-02
115	GO:0008536: Ran GTPase binding	3.73E-02
116	GO:0001085: RNA polymerase II transcription factor binding	3.73E-02
117	GO:0004527: exonuclease activity	3.73E-02
118	GO:0005506: iron ion binding	3.77E-02
119	GO:0005355: glucose transmembrane transporter activity	3.93E-02
120	GO:0050662: coenzyme binding	3.93E-02
121	GO:0010181: FMN binding	3.93E-02
122	GO:0019901: protein kinase binding	4.13E-02
123	GO:0048038: quinone binding	4.33E-02
124	GO:0019843: rRNA binding	4.33E-02
125	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.33E-02
126	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.45E-02
127	GO:0016829: lyase activity	4.68E-02
128	GO:0000156: phosphorelay response regulator activity	4.75E-02
129	GO:0051015: actin filament binding	4.75E-02
130	GO:0003684: damaged DNA binding	4.96E-02
131	GO:0016791: phosphatase activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009507: chloroplast	2.91E-10
4	GO:0009574: preprophase band	1.17E-04
5	GO:0010370: perinucleolar chromocenter	4.23E-04
6	GO:0030529: intracellular ribonucleoprotein complex	1.18E-03
7	GO:0009570: chloroplast stroma	1.30E-03
8	GO:0016605: PML body	1.49E-03
9	GO:0005938: cell cortex	1.51E-03
10	GO:0032432: actin filament bundle	2.15E-03
11	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.89E-03
12	GO:0072686: mitotic spindle	3.71E-03
13	GO:0009535: chloroplast thylakoid membrane	4.41E-03
14	GO:0010005: cortical microtubule, transverse to long axis	5.53E-03
15	GO:0009986: cell surface	6.54E-03
16	GO:0031305: integral component of mitochondrial inner membrane	7.60E-03
17	GO:0009536: plastid	7.71E-03
18	GO:0005811: lipid particle	8.73E-03
19	GO:0005736: DNA-directed RNA polymerase I complex	9.92E-03
20	GO:0005720: nuclear heterochromatin	9.92E-03
21	GO:0009707: chloroplast outer membrane	1.10E-02
22	GO:0016604: nuclear body	1.12E-02
23	GO:0055028: cortical microtubule	1.24E-02
24	GO:0016324: apical plasma membrane	1.24E-02
25	GO:0005884: actin filament	1.38E-02
26	GO:0016602: CCAAT-binding factor complex	1.66E-02
27	GO:0009505: plant-type cell wall	2.19E-02
28	GO:0009532: plastid stroma	2.62E-02
29	GO:0015629: actin cytoskeleton	2.98E-02
30	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.16E-02
31	GO:0005768: endosome	3.25E-02
32	GO:0009706: chloroplast inner membrane	3.47E-02
33	GO:0005770: late endosome	3.73E-02
34	GO:0009524: phragmoplast	4.56E-02