co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G54040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
3	GO:0031222: arabinan catabolic process	0.00E+00
4	GO:0061157: mRNA destabilization	0.00E+00
5	GO:2000469: negative regulation of peroxidase activity	0.00E+00
6	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
7	GO:0046620: regulation of organ growth	1.88E-04
8	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	2.18E-04
9	GO:0010480: microsporocyte differentiation	2.18E-04
10	GO:0051247: positive regulation of protein metabolic process	2.18E-04
11	GO:0015904: tetracycline transport	2.18E-04
12	GO:2000905: negative regulation of starch metabolic process	2.18E-04
13	GO:0000305: response to oxygen radical	2.18E-04
14	GO:0000025: maltose catabolic process	2.18E-04
15	GO:0080173: male-female gamete recognition during double fertilization	2.18E-04
16	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.18E-04
17	GO:1900871: chloroplast mRNA modification	4.86E-04
18	GO:0071497: cellular response to freezing	4.86E-04
19	GO:1900033: negative regulation of trichome patterning	4.86E-04
20	GO:0006568: tryptophan metabolic process	4.86E-04
21	GO:0015824: proline transport	4.86E-04
22	GO:0006006: glucose metabolic process	5.92E-04
23	GO:0048586: regulation of long-day photoperiodism, flowering	7.90E-04
24	GO:0071398: cellular response to fatty acid	7.90E-04
25	GO:0033591: response to L-ascorbic acid	7.90E-04
26	GO:0010431: seed maturation	1.10E-03
27	GO:0010306: rhamnogalacturonan II biosynthetic process	1.13E-03
28	GO:0090308: regulation of methylation-dependent chromatin silencing	1.13E-03
29	GO:0010371: regulation of gibberellin biosynthetic process	1.13E-03
30	GO:1990019: protein storage vacuole organization	1.13E-03
31	GO:0009755: hormone-mediated signaling pathway	1.50E-03
32	GO:1901141: regulation of lignin biosynthetic process	1.50E-03
33	GO:0048629: trichome patterning	1.50E-03
34	GO:0010109: regulation of photosynthesis	1.50E-03
35	GO:0042274: ribosomal small subunit biogenesis	1.50E-03
36	GO:2000306: positive regulation of photomorphogenesis	1.50E-03
37	GO:0006749: glutathione metabolic process	1.50E-03
38	GO:0009740: gibberellic acid mediated signaling pathway	1.90E-03
39	GO:0016131: brassinosteroid metabolic process	1.91E-03
40	GO:0010438: cellular response to sulfur starvation	1.91E-03
41	GO:0009646: response to absence of light	1.92E-03
42	GO:0009416: response to light stimulus	2.10E-03
43	GO:0010583: response to cyclopentenone	2.35E-03
44	GO:1902456: regulation of stomatal opening	2.35E-03
45	GO:0010405: arabinogalactan protein metabolic process	2.35E-03
46	GO:0009959: negative gravitropism	2.35E-03
47	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.35E-03
48	GO:1901657: glycosyl compound metabolic process	2.50E-03
49	GO:0010252: auxin homeostasis	2.66E-03
50	GO:0009082: branched-chain amino acid biosynthetic process	2.83E-03
51	GO:0009099: valine biosynthetic process	2.83E-03
52	GO:0030488: tRNA methylation	2.83E-03
53	GO:0031930: mitochondria-nucleus signaling pathway	2.83E-03
54	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	3.33E-03
55	GO:0030307: positive regulation of cell growth	3.33E-03
56	GO:0010161: red light signaling pathway	3.33E-03
57	GO:0006955: immune response	3.33E-03
58	GO:0048437: floral organ development	3.33E-03
59	GO:0010029: regulation of seed germination	3.35E-03
60	GO:0006402: mRNA catabolic process	3.86E-03
61	GO:0010439: regulation of glucosinolate biosynthetic process	3.86E-03
62	GO:0006605: protein targeting	3.86E-03
63	GO:2000070: regulation of response to water deprivation	3.86E-03
64	GO:0009819: drought recovery	3.86E-03
65	GO:0040008: regulation of growth	3.87E-03
66	GO:0009097: isoleucine biosynthetic process	4.42E-03
67	GO:0010100: negative regulation of photomorphogenesis	4.42E-03
68	GO:0010099: regulation of photomorphogenesis	4.42E-03
69	GO:0006783: heme biosynthetic process	5.00E-03
70	GO:0000373: Group II intron splicing	5.00E-03
71	GO:0009051: pentose-phosphate shunt, oxidative branch	5.00E-03
72	GO:0009638: phototropism	5.62E-03
73	GO:0009098: leucine biosynthetic process	5.62E-03
74	GO:0010018: far-red light signaling pathway	5.62E-03
75	GO:1900865: chloroplast RNA modification	5.62E-03
76	GO:0031425: chloroplast RNA processing	5.62E-03
77	GO:0009299: mRNA transcription	6.25E-03
78	GO:0016441: posttranscriptional gene silencing	6.25E-03
79	GO:0048229: gametophyte development	6.91E-03
80	GO:0010216: maintenance of DNA methylation	6.91E-03
81	GO:0010015: root morphogenesis	6.91E-03
82	GO:0009773: photosynthetic electron transport in photosystem I	6.91E-03
83	GO:0009682: induced systemic resistance	6.91E-03
84	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.60E-03
85	GO:0005983: starch catabolic process	7.60E-03
86	GO:0010628: positive regulation of gene expression	8.30E-03
87	GO:2000028: regulation of photoperiodism, flowering	8.30E-03
88	GO:0010075: regulation of meristem growth	8.30E-03
89	GO:0009725: response to hormone	8.30E-03
90	GO:0009767: photosynthetic electron transport chain	8.30E-03
91	GO:0010588: cotyledon vascular tissue pattern formation	8.30E-03
92	GO:0009934: regulation of meristem structural organization	9.03E-03
93	GO:0006541: glutamine metabolic process	9.03E-03
94	GO:0009585: red, far-red light phototransduction	9.08E-03
95	GO:0070588: calcium ion transmembrane transport	9.79E-03
96	GO:0042753: positive regulation of circadian rhythm	1.06E-02
97	GO:0080147: root hair cell development	1.14E-02
98	GO:0005992: trehalose biosynthetic process	1.14E-02
99	GO:0010187: negative regulation of seed germination	1.14E-02
100	GO:0016998: cell wall macromolecule catabolic process	1.30E-02
101	GO:0031348: negative regulation of defense response	1.39E-02
102	GO:0009625: response to insect	1.48E-02
103	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.48E-02
104	GO:0009693: ethylene biosynthetic process	1.48E-02
105	GO:0009686: gibberellin biosynthetic process	1.48E-02
106	GO:0080022: primary root development	1.75E-02
107	GO:0010087: phloem or xylem histogenesis	1.75E-02
108	GO:0010118: stomatal movement	1.75E-02
109	GO:0048653: anther development	1.75E-02
110	GO:0010182: sugar mediated signaling pathway	1.85E-02
111	GO:0048868: pollen tube development	1.85E-02
112	GO:0009741: response to brassinosteroid	1.85E-02
113	GO:0010268: brassinosteroid homeostasis	1.85E-02
114	GO:0010305: leaf vascular tissue pattern formation	1.85E-02
115	GO:0048544: recognition of pollen	1.95E-02
116	GO:0000302: response to reactive oxygen species	2.15E-02
117	GO:0071554: cell wall organization or biogenesis	2.15E-02
118	GO:0010090: trichome morphogenesis	2.36E-02
119	GO:0009734: auxin-activated signaling pathway	2.38E-02
120	GO:0009639: response to red or far red light	2.46E-02
121	GO:0006464: cellular protein modification process	2.46E-02
122	GO:0009567: double fertilization forming a zygote and endosperm	2.46E-02
123	GO:0009739: response to gibberellin	2.51E-02
124	GO:0009733: response to auxin	2.86E-02
125	GO:0010411: xyloglucan metabolic process	3.14E-02
126	GO:0048573: photoperiodism, flowering	3.14E-02
127	GO:0015995: chlorophyll biosynthetic process	3.14E-02
128	GO:0009658: chloroplast organization	3.47E-02
129	GO:0048527: lateral root development	3.74E-02
130	GO:0009860: pollen tube growth	3.74E-02
131	GO:0009631: cold acclimation	3.74E-02
132	GO:0006865: amino acid transport	3.86E-02
133	GO:0009867: jasmonic acid mediated signaling pathway	3.99E-02
134	GO:0048366: leaf development	4.08E-02
135	GO:0034599: cellular response to oxidative stress	4.12E-02
136	GO:0005975: carbohydrate metabolic process	4.43E-02
137	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.44E-02
138	GO:0006631: fatty acid metabolic process	4.51E-02
139	GO:0009926: auxin polar transport	4.78E-02
140	GO:0042546: cell wall biogenesis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0004134: 4-alpha-glucanotransferase activity	2.18E-04
3	GO:0008395: steroid hydroxylase activity	2.18E-04
4	GO:0008242: omega peptidase activity	2.18E-04
5	GO:0050139: nicotinate-N-glucosyltransferase activity	2.18E-04
6	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.18E-04
7	GO:0042834: peptidoglycan binding	2.18E-04
8	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.18E-04
9	GO:0010313: phytochrome binding	2.18E-04
10	GO:0034722: gamma-glutamyl-peptidase activity	4.86E-04
11	GO:0017118: lipoyltransferase activity	4.86E-04
12	GO:0004362: glutathione-disulfide reductase activity	4.86E-04
13	GO:0043425: bHLH transcription factor binding	4.86E-04
14	GO:0008493: tetracycline transporter activity	4.86E-04
15	GO:0015193: L-proline transmembrane transporter activity	7.90E-04
16	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.90E-04
17	GO:0003913: DNA photolyase activity	7.90E-04
18	GO:0005528: FK506 binding	9.15E-04
19	GO:0052656: L-isoleucine transaminase activity	1.13E-03
20	GO:0052654: L-leucine transaminase activity	1.13E-03
21	GO:0052655: L-valine transaminase activity	1.13E-03
22	GO:0046556: alpha-L-arabinofuranosidase activity	1.50E-03
23	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.50E-03
24	GO:0004084: branched-chain-amino-acid transaminase activity	1.50E-03
25	GO:0016688: L-ascorbate peroxidase activity	2.35E-03
26	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	2.35E-03
27	GO:0080030: methyl indole-3-acetate esterase activity	2.35E-03
28	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.35E-03
29	GO:0004709: MAP kinase kinase kinase activity	2.35E-03
30	GO:0004130: cytochrome-c peroxidase activity	2.35E-03
31	GO:0004871: signal transducer activity	2.73E-03
32	GO:0008195: phosphatidate phosphatase activity	2.83E-03
33	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.83E-03
34	GO:0102483: scopolin beta-glucosidase activity	3.72E-03
35	GO:0008173: RNA methyltransferase activity	4.42E-03
36	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.00E-03
37	GO:0008422: beta-glucosidase activity	5.70E-03
38	GO:0050661: NADP binding	5.95E-03
39	GO:0004805: trehalose-phosphatase activity	6.25E-03
40	GO:0000976: transcription regulatory region sequence-specific DNA binding	7.60E-03
41	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.86E-03
42	GO:0005262: calcium channel activity	8.30E-03
43	GO:0008146: sulfotransferase activity	9.79E-03
44	GO:0031418: L-ascorbic acid binding	1.14E-02
45	GO:0005345: purine nucleobase transmembrane transporter activity	1.22E-02
46	GO:0033612: receptor serine/threonine kinase binding	1.30E-02
47	GO:0003964: RNA-directed DNA polymerase activity	1.30E-02
48	GO:0003727: single-stranded RNA binding	1.57E-02
49	GO:0008514: organic anion transmembrane transporter activity	1.57E-02
50	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.15E-02
51	GO:0044212: transcription regulatory region DNA binding	2.41E-02
52	GO:0016759: cellulose synthase activity	2.46E-02
53	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.63E-02
54	GO:0016413: O-acetyltransferase activity	2.68E-02
55	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.14E-02
56	GO:0015238: drug transmembrane transporter activity	3.49E-02
57	GO:0016788: hydrolase activity, acting on ester bonds	3.54E-02
58	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.74E-02
59	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.99E-02
60	GO:0050660: flavin adenine dinucleotide binding	4.01E-02
61	GO:0003993: acid phosphatase activity	4.12E-02
62	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.25E-02
63	GO:0042393: histone binding	4.38E-02
64	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.46E-02
65	GO:0030246: carbohydrate binding	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0009654: photosystem II oxygen evolving complex	1.01E-03
2	GO:0009544: chloroplast ATP synthase complex	1.50E-03
3	GO:0019898: extrinsic component of membrane	2.06E-03
4	GO:0009543: chloroplast thylakoid lumen	2.73E-03
5	GO:0009501: amyloplast	3.86E-03
6	GO:0005720: nuclear heterochromatin	5.00E-03
7	GO:0010494: cytoplasmic stress granule	5.00E-03
8	GO:0005578: proteinaceous extracellular matrix	8.30E-03
9	GO:0030095: chloroplast photosystem II	9.03E-03
10	GO:0005770: late endosome	1.85E-02
11	GO:0030529: intracellular ribonucleoprotein complex	2.79E-02
12	GO:0000932: P-body	2.79E-02
13	GO:0000151: ubiquitin ligase complex	3.37E-02
14	GO:0031902: late endosome membrane	4.51E-02
15	GO:0031977: thylakoid lumen	4.51E-02
16	GO:0090406: pollen tube	4.78E-02