co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53710

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
3	GO:0009173: pyrimidine ribonucleoside monophosphate metabolic process	0.00E+00
4	GO:0036258: multivesicular body assembly	0.00E+00
5	GO:0002191: cap-dependent translational initiation	0.00E+00
6	GO:0046680: response to DDT	0.00E+00
7	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
8	GO:0006511: ubiquitin-dependent protein catabolic process	5.60E-11
9	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.85E-07
10	GO:0030433: ubiquitin-dependent ERAD pathway	5.52E-05
11	GO:0051603: proteolysis involved in cellular protein catabolic process	1.10E-04
12	GO:0006102: isocitrate metabolic process	1.37E-04
13	GO:0006491: N-glycan processing	1.37E-04
14	GO:0030163: protein catabolic process	1.69E-04
15	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.77E-04
16	GO:0000032: cell wall mannoprotein biosynthetic process	1.77E-04
17	GO:0046686: response to cadmium ion	2.07E-04
18	GO:2000072: regulation of defense response to fungus, incompatible interaction	4.01E-04
19	GO:0006568: tryptophan metabolic process	4.01E-04
20	GO:0009805: coumarin biosynthetic process	4.01E-04
21	GO:0031124: mRNA 3'-end processing	4.01E-04
22	GO:0051645: Golgi localization	4.01E-04
23	GO:0010372: positive regulation of gibberellin biosynthetic process	4.01E-04
24	GO:0080026: response to indolebutyric acid	4.01E-04
25	GO:0060151: peroxisome localization	4.01E-04
26	GO:0006099: tricarboxylic acid cycle	4.86E-04
27	GO:0090630: activation of GTPase activity	6.55E-04
28	GO:0006517: protein deglycosylation	6.55E-04
29	GO:0033591: response to L-ascorbic acid	6.55E-04
30	GO:0010498: proteasomal protein catabolic process	6.55E-04
31	GO:0051646: mitochondrion localization	6.55E-04
32	GO:0009062: fatty acid catabolic process	6.55E-04
33	GO:0010359: regulation of anion channel activity	6.55E-04
34	GO:0090436: leaf pavement cell development	6.55E-04
35	GO:0080024: indolebutyric acid metabolic process	9.34E-04
36	GO:0070676: intralumenal vesicle formation	9.34E-04
37	GO:0006515: misfolded or incompletely synthesized protein catabolic process	9.34E-04
38	GO:0009298: GDP-mannose biosynthetic process	9.34E-04
39	GO:0010255: glucose mediated signaling pathway	9.34E-04
40	GO:0002679: respiratory burst involved in defense response	9.34E-04
41	GO:0010222: stem vascular tissue pattern formation	1.24E-03
42	GO:0010363: regulation of plant-type hypersensitive response	1.24E-03
43	GO:0006221: pyrimidine nucleotide biosynthetic process	1.24E-03
44	GO:0009646: response to absence of light	1.44E-03
45	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.57E-03
46	GO:0006461: protein complex assembly	1.57E-03
47	GO:0009823: cytokinin catabolic process	1.57E-03
48	GO:0018279: protein N-linked glycosylation via asparagine	1.57E-03
49	GO:0006564: L-serine biosynthetic process	1.57E-03
50	GO:0005513: detection of calcium ion	1.57E-03
51	GO:0015031: protein transport	1.85E-03
52	GO:0001731: formation of translation preinitiation complex	1.94E-03
53	GO:0048827: phyllome development	1.94E-03
54	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.94E-03
55	GO:0006555: methionine metabolic process	1.94E-03
56	GO:0043248: proteasome assembly	1.94E-03
57	GO:0009058: biosynthetic process	2.02E-03
58	GO:0009554: megasporogenesis	2.32E-03
59	GO:0019509: L-methionine salvage from methylthioadenosine	2.32E-03
60	GO:0009612: response to mechanical stimulus	2.32E-03
61	GO:0000338: protein deneddylation	2.74E-03
62	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.74E-03
63	GO:0050821: protein stabilization	3.17E-03
64	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.17E-03
65	GO:0006402: mRNA catabolic process	3.17E-03
66	GO:0048766: root hair initiation	3.17E-03
67	GO:0048767: root hair elongation	3.25E-03
68	GO:0006499: N-terminal protein myristoylation	3.41E-03
69	GO:0010043: response to zinc ion	3.57E-03
70	GO:0006972: hyperosmotic response	3.63E-03
71	GO:0009699: phenylpropanoid biosynthetic process	3.63E-03
72	GO:0009932: cell tip growth	3.63E-03
73	GO:0006379: mRNA cleavage	4.10E-03
74	GO:0046685: response to arsenic-containing substance	4.10E-03
75	GO:0009821: alkaloid biosynthetic process	4.10E-03
76	GO:0009651: response to salt stress	4.23E-03
77	GO:0043069: negative regulation of programmed cell death	5.11E-03
78	GO:0048765: root hair cell differentiation	5.65E-03
79	GO:0006378: mRNA polyadenylation	5.65E-03
80	GO:0046856: phosphatidylinositol dephosphorylation	5.65E-03
81	GO:0043085: positive regulation of catalytic activity	5.65E-03
82	GO:0016925: protein sumoylation	6.20E-03
83	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.20E-03
84	GO:0006790: sulfur compound metabolic process	6.20E-03
85	GO:0006486: protein glycosylation	6.78E-03
86	GO:0030048: actin filament-based movement	6.78E-03
87	GO:0006807: nitrogen compound metabolic process	6.78E-03
88	GO:0048467: gynoecium development	7.37E-03
89	GO:0034605: cellular response to heat	7.37E-03
90	GO:0006446: regulation of translational initiation	7.37E-03
91	GO:0046854: phosphatidylinositol phosphorylation	7.98E-03
92	GO:0010053: root epidermal cell differentiation	7.98E-03
93	GO:0007031: peroxisome organization	7.98E-03
94	GO:0019853: L-ascorbic acid biosynthetic process	7.98E-03
95	GO:0006096: glycolytic process	8.02E-03
96	GO:0006886: intracellular protein transport	8.48E-03
97	GO:0009626: plant-type hypersensitive response	8.55E-03
98	GO:0000162: tryptophan biosynthetic process	8.61E-03
99	GO:0034976: response to endoplasmic reticulum stress	8.61E-03
100	GO:0006487: protein N-linked glycosylation	9.26E-03
101	GO:0006338: chromatin remodeling	9.26E-03
102	GO:0010187: negative regulation of seed germination	9.26E-03
103	GO:0006406: mRNA export from nucleus	9.26E-03
104	GO:0009553: embryo sac development	9.37E-03
105	GO:0015992: proton transport	1.06E-02
106	GO:0010431: seed maturation	1.06E-02
107	GO:0007005: mitochondrion organization	1.13E-02
108	GO:0019748: secondary metabolic process	1.13E-02
109	GO:0010227: floral organ abscission	1.20E-02
110	GO:0009561: megagametogenesis	1.27E-02
111	GO:0009306: protein secretion	1.27E-02
112	GO:0042147: retrograde transport, endosome to Golgi	1.35E-02
113	GO:0051028: mRNA transport	1.35E-02
114	GO:0048868: pollen tube development	1.50E-02
115	GO:0010154: fruit development	1.50E-02
116	GO:0006662: glycerol ether metabolic process	1.50E-02
117	GO:0055072: iron ion homeostasis	1.66E-02
118	GO:0006635: fatty acid beta-oxidation	1.75E-02
119	GO:0031047: gene silencing by RNA	1.83E-02
120	GO:0010090: trichome morphogenesis	1.91E-02
121	GO:0009567: double fertilization forming a zygote and endosperm	2.00E-02
122	GO:0006914: autophagy	2.00E-02
123	GO:0016579: protein deubiquitination	2.18E-02
124	GO:0009555: pollen development	2.20E-02
125	GO:0009615: response to virus	2.27E-02
126	GO:0009816: defense response to bacterium, incompatible interaction	2.36E-02
127	GO:0010411: xyloglucan metabolic process	2.55E-02
128	GO:0006888: ER to Golgi vesicle-mediated transport	2.55E-02
129	GO:0009817: defense response to fungus, incompatible interaction	2.74E-02
130	GO:0007568: aging	3.04E-02
131	GO:0010119: regulation of stomatal movement	3.04E-02
132	GO:0000724: double-strand break repair via homologous recombination	3.14E-02
133	GO:0009867: jasmonic acid mediated signaling pathway	3.24E-02
134	GO:0045087: innate immune response	3.24E-02
135	GO:0016051: carbohydrate biosynthetic process	3.24E-02
136	GO:0034599: cellular response to oxidative stress	3.35E-02
137	GO:0045454: cell redox homeostasis	3.85E-02
138	GO:0009744: response to sucrose	3.88E-02
139	GO:0051707: response to other organism	3.88E-02
140	GO:0009640: photomorphogenesis	3.88E-02
141	GO:0042546: cell wall biogenesis	4.00E-02
142	GO:0031347: regulation of defense response	4.45E-02
143	GO:0009664: plant-type cell wall organization	4.56E-02
144	GO:0009846: pollen germination	4.56E-02
145	GO:0009585: red, far-red light phototransduction	4.80E-02
146	GO:0006397: mRNA processing	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
4	GO:0098808: mRNA cap binding	0.00E+00
5	GO:0004298: threonine-type endopeptidase activity	2.01E-12
6	GO:0036402: proteasome-activating ATPase activity	4.85E-07
7	GO:0008233: peptidase activity	2.05E-06
8	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.30E-05
9	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.83E-05
10	GO:0017025: TBP-class protein binding	2.46E-05
11	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	1.77E-04
12	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.77E-04
13	GO:0048037: cofactor binding	1.77E-04
14	GO:0004476: mannose-6-phosphate isomerase activity	1.77E-04
15	GO:0019786: Atg8-specific protease activity	1.77E-04
16	GO:0030955: potassium ion binding	2.51E-04
17	GO:0004743: pyruvate kinase activity	2.51E-04
18	GO:0004640: phosphoribosylanthranilate isomerase activity	4.01E-04
19	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.01E-04
20	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	4.01E-04
21	GO:0052739: phosphatidylserine 1-acylhydrolase activity	4.01E-04
22	GO:0010297: heteropolysaccharide binding	4.01E-04
23	GO:0051879: Hsp90 protein binding	4.01E-04
24	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	4.01E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	4.01E-04
26	GO:0004127: cytidylate kinase activity	4.01E-04
27	GO:0008805: carbon-monoxide oxygenase activity	4.01E-04
28	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.01E-04
29	GO:0070361: mitochondrial light strand promoter anti-sense binding	4.01E-04
30	GO:0051731: polynucleotide 5'-hydroxyl-kinase activity	4.01E-04
31	GO:0019779: Atg8 activating enzyme activity	4.01E-04
32	GO:0030742: GTP-dependent protein binding	4.01E-04
33	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.55E-04
34	GO:0008253: 5'-nucleotidase activity	6.55E-04
35	GO:0004848: ureidoglycolate hydrolase activity	6.55E-04
36	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.55E-04
37	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.34E-04
38	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	9.34E-04
39	GO:0009041: uridylate kinase activity	9.34E-04
40	GO:0070628: proteasome binding	1.24E-03
41	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.24E-03
42	GO:0019776: Atg8 ligase activity	1.24E-03
43	GO:0031386: protein tag	1.57E-03
44	GO:0008374: O-acyltransferase activity	1.57E-03
45	GO:0019139: cytokinin dehydrogenase activity	1.57E-03
46	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.57E-03
47	GO:0017137: Rab GTPase binding	1.57E-03
48	GO:0004518: nuclease activity	1.76E-03
49	GO:0031593: polyubiquitin binding	1.94E-03
50	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.94E-03
51	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.94E-03
52	GO:0004559: alpha-mannosidase activity	2.32E-03
53	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.32E-03
54	GO:0004656: procollagen-proline 4-dioxygenase activity	2.32E-03
55	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.63E-03
56	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.91E-03
57	GO:0016887: ATPase activity	4.37E-03
58	GO:0016844: strictosidine synthase activity	4.60E-03
59	GO:0000287: magnesium ion binding	4.82E-03
60	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	5.11E-03
61	GO:0008047: enzyme activator activity	5.11E-03
62	GO:0008559: xenobiotic-transporting ATPase activity	5.65E-03
63	GO:0005198: structural molecule activity	5.66E-03
64	GO:0051287: NAD binding	6.09E-03
65	GO:0003774: motor activity	7.37E-03
66	GO:0008131: primary amine oxidase activity	7.37E-03
67	GO:0004190: aspartic-type endopeptidase activity	7.98E-03
68	GO:0031418: L-ascorbic acid binding	9.26E-03
69	GO:0043130: ubiquitin binding	9.26E-03
70	GO:0005516: calmodulin binding	9.98E-03
71	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.06E-02
72	GO:0004176: ATP-dependent peptidase activity	1.06E-02
73	GO:0005524: ATP binding	1.16E-02
74	GO:0003756: protein disulfide isomerase activity	1.27E-02
75	GO:0047134: protein-disulfide reductase activity	1.35E-02
76	GO:0004402: histone acetyltransferase activity	1.43E-02
77	GO:0008565: protein transporter activity	1.45E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	1.58E-02
79	GO:0016853: isomerase activity	1.58E-02
80	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.75E-02
81	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.75E-02
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.91E-02
83	GO:0008237: metallopeptidase activity	2.09E-02
84	GO:0016597: amino acid binding	2.18E-02
85	GO:0000166: nucleotide binding	2.20E-02
86	GO:0051213: dioxygenase activity	2.27E-02
87	GO:0008375: acetylglucosaminyltransferase activity	2.45E-02
88	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.45E-02
89	GO:0004683: calmodulin-dependent protein kinase activity	2.55E-02
90	GO:0008236: serine-type peptidase activity	2.64E-02
91	GO:0005096: GTPase activator activity	2.84E-02
92	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.04E-02
93	GO:0035091: phosphatidylinositol binding	4.11E-02
94	GO:0005509: calcium ion binding	4.77E-02
95	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	3.39E-17
2	GO:0005839: proteasome core complex	1.56E-14
3	GO:0005829: cytosol	9.77E-10
4	GO:0031597: cytosolic proteasome complex	8.55E-07
5	GO:0031595: nuclear proteasome complex	1.39E-06
6	GO:0019773: proteasome core complex, alpha-subunit complex	3.13E-06
7	GO:0008540: proteasome regulatory particle, base subcomplex	6.02E-06
8	GO:0005783: endoplasmic reticulum	3.02E-05
9	GO:0005774: vacuolar membrane	1.36E-04
10	GO:0016442: RISC complex	1.77E-04
11	GO:0008541: proteasome regulatory particle, lid subcomplex	3.42E-04
12	GO:0048471: perinuclear region of cytoplasm	3.42E-04
13	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.55E-04
14	GO:0030132: clathrin coat of coated pit	6.55E-04
15	GO:0005849: mRNA cleavage factor complex	9.34E-04
16	GO:0005775: vacuolar lumen	9.34E-04
17	GO:0030660: Golgi-associated vesicle membrane	1.24E-03
18	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	1.24E-03
19	GO:0005776: autophagosome	1.24E-03
20	GO:0000813: ESCRT I complex	1.57E-03
21	GO:0008250: oligosaccharyltransferase complex	1.57E-03
22	GO:0030127: COPII vesicle coat	1.94E-03
23	GO:0030904: retromer complex	1.94E-03
24	GO:0016282: eukaryotic 43S preinitiation complex	1.94E-03
25	GO:0033290: eukaryotic 48S preinitiation complex	2.32E-03
26	GO:0005737: cytoplasm	2.45E-03
27	GO:0000421: autophagosome membrane	3.17E-03
28	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	3.17E-03
29	GO:0031982: vesicle	3.17E-03
30	GO:0010494: cytoplasmic stress granule	4.10E-03
31	GO:0008180: COP9 signalosome	4.10E-03
32	GO:0031090: organelle membrane	4.10E-03
33	GO:0005773: vacuole	4.15E-03
34	GO:0031902: late endosome membrane	4.64E-03
35	GO:0016459: myosin complex	5.11E-03
36	GO:0005765: lysosomal membrane	5.65E-03
37	GO:0005794: Golgi apparatus	6.17E-03
38	GO:0005665: DNA-directed RNA polymerase II, core complex	6.20E-03
39	GO:0005635: nuclear envelope	7.26E-03
40	GO:0000419: DNA-directed RNA polymerase V complex	8.61E-03
41	GO:0005789: endoplasmic reticulum membrane	9.05E-03
42	GO:0031410: cytoplasmic vesicle	1.13E-02
43	GO:0005778: peroxisomal membrane	2.09E-02
44	GO:0000932: P-body	2.27E-02
45	GO:0005777: peroxisome	2.62E-02
46	GO:0005886: plasma membrane	2.72E-02
47	GO:0019005: SCF ubiquitin ligase complex	2.74E-02
48	GO:0005643: nuclear pore	2.74E-02
49	GO:0000325: plant-type vacuole	3.04E-02
50	GO:0048046: apoplast	3.93E-02
51	GO:0005802: trans-Golgi network	3.95E-02
52	GO:0005618: cell wall	4.52E-02
53	GO:0031966: mitochondrial membrane	4.56E-02
54	GO:0005768: endosome	4.63E-02