Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046865: terpenoid transport0.00E+00
2GO:0018063: cytochrome c-heme linkage0.00E+00
3GO:1902009: positive regulation of toxin transport0.00E+00
4GO:0051553: flavone biosynthetic process0.00E+00
5GO:0010324: membrane invagination0.00E+00
6GO:0010055: atrichoblast differentiation0.00E+00
7GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
8GO:1902001: fatty acid transmembrane transport0.00E+00
9GO:1902289: negative regulation of defense response to oomycetes0.00E+00
10GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
11GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
12GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
13GO:2000378: negative regulation of reactive oxygen species metabolic process0.00E+00
14GO:0009312: oligosaccharide biosynthetic process0.00E+00
15GO:0002237: response to molecule of bacterial origin5.18E-06
16GO:0071456: cellular response to hypoxia2.00E-05
17GO:0010112: regulation of systemic acquired resistance3.40E-05
18GO:0009751: response to salicylic acid4.81E-05
19GO:0051707: response to other organism5.90E-05
20GO:0010200: response to chitin1.06E-04
21GO:0042742: defense response to bacterium1.41E-04
22GO:0009643: photosynthetic acclimation2.23E-04
23GO:1900057: positive regulation of leaf senescence3.88E-04
24GO:0050691: regulation of defense response to virus by host4.13E-04
25GO:0032491: detection of molecule of fungal origin4.13E-04
26GO:0009968: negative regulation of signal transduction4.13E-04
27GO:1990542: mitochondrial transmembrane transport4.13E-04
28GO:0032107: regulation of response to nutrient levels4.13E-04
29GO:0048508: embryonic meristem development4.13E-04
30GO:0015760: glucose-6-phosphate transport4.13E-04
31GO:0043547: positive regulation of GTPase activity4.13E-04
32GO:1990641: response to iron ion starvation4.13E-04
33GO:0033306: phytol metabolic process4.13E-04
34GO:0009636: response to toxic substance5.79E-04
35GO:0010204: defense response signaling pathway, resistance gene-independent5.92E-04
36GO:0010150: leaf senescence6.44E-04
37GO:0010193: response to ozone7.10E-04
38GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway8.37E-04
39GO:0009617: response to bacterium8.79E-04
40GO:0051258: protein polymerization8.93E-04
41GO:0015012: heparan sulfate proteoglycan biosynthetic process8.93E-04
42GO:0071668: plant-type cell wall assembly8.93E-04
43GO:0080183: response to photooxidative stress8.93E-04
44GO:0010155: regulation of proton transport8.93E-04
45GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.93E-04
46GO:0080181: lateral root branching8.93E-04
47GO:0006024: glycosaminoglycan biosynthetic process8.93E-04
48GO:0055088: lipid homeostasis8.93E-04
49GO:0010115: regulation of abscisic acid biosynthetic process8.93E-04
50GO:0015908: fatty acid transport8.93E-04
51GO:0002240: response to molecule of oomycetes origin8.93E-04
52GO:0006101: citrate metabolic process8.93E-04
53GO:0015865: purine nucleotide transport8.93E-04
54GO:0044419: interspecies interaction between organisms8.93E-04
55GO:0009945: radial axis specification8.93E-04
56GO:0015712: hexose phosphate transport8.93E-04
57GO:0010271: regulation of chlorophyll catabolic process8.93E-04
58GO:0080163: regulation of protein serine/threonine phosphatase activity1.45E-03
59GO:0035436: triose phosphate transmembrane transport1.45E-03
60GO:0006065: UDP-glucuronate biosynthetic process1.45E-03
61GO:0015783: GDP-fucose transport1.45E-03
62GO:0015692: lead ion transport1.45E-03
63GO:0052546: cell wall pectin metabolic process1.45E-03
64GO:0015695: organic cation transport1.45E-03
65GO:0015714: phosphoenolpyruvate transport1.45E-03
66GO:0080168: abscisic acid transport1.45E-03
67GO:0006954: inflammatory response1.45E-03
68GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.45E-03
69GO:0071323: cellular response to chitin2.10E-03
70GO:0080024: indolebutyric acid metabolic process2.10E-03
71GO:0055070: copper ion homeostasis2.10E-03
72GO:0001676: long-chain fatty acid metabolic process2.10E-03
73GO:0010116: positive regulation of abscisic acid biosynthetic process2.10E-03
74GO:0002239: response to oomycetes2.10E-03
75GO:0046902: regulation of mitochondrial membrane permeability2.10E-03
76GO:0010731: protein glutathionylation2.10E-03
77GO:0015696: ammonium transport2.10E-03
78GO:0009863: salicylic acid mediated signaling pathway2.27E-03
79GO:0080147: root hair cell development2.27E-03
80GO:0015031: protein transport2.70E-03
81GO:0015867: ATP transport2.82E-03
82GO:0010109: regulation of photosynthesis2.82E-03
83GO:0045227: capsule polysaccharide biosynthetic process2.82E-03
84GO:0072488: ammonium transmembrane transport2.82E-03
85GO:0033358: UDP-L-arabinose biosynthetic process2.82E-03
86GO:0015713: phosphoglycerate transport2.82E-03
87GO:0006012: galactose metabolic process3.29E-03
88GO:0006855: drug transmembrane transport3.59E-03
89GO:0006097: glyoxylate cycle3.61E-03
90GO:0009229: thiamine diphosphate biosynthetic process3.61E-03
91GO:0034052: positive regulation of plant-type hypersensitive response3.61E-03
92GO:0007166: cell surface receptor signaling pathway3.69E-03
93GO:0009228: thiamine biosynthetic process4.47E-03
94GO:0002238: response to molecule of fungal origin4.47E-03
95GO:0009759: indole glucosinolate biosynthetic process4.47E-03
96GO:0015866: ADP transport4.47E-03
97GO:0010256: endomembrane system organization4.47E-03
98GO:1900425: negative regulation of defense response to bacterium4.47E-03
99GO:0033365: protein localization to organelle4.47E-03
100GO:0010337: regulation of salicylic acid metabolic process4.47E-03
101GO:0006979: response to oxidative stress4.64E-03
102GO:0009749: response to glucose5.21E-03
103GO:0009942: longitudinal axis specification5.38E-03
104GO:0031930: mitochondria-nucleus signaling pathway5.38E-03
105GO:0071470: cellular response to osmotic stress5.38E-03
106GO:0045926: negative regulation of growth5.38E-03
107GO:0002229: defense response to oomycetes5.58E-03
108GO:0006333: chromatin assembly or disassembly6.36E-03
109GO:1902074: response to salt6.36E-03
110GO:0010044: response to aluminum ion6.36E-03
111GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.36E-03
112GO:1900056: negative regulation of leaf senescence6.36E-03
113GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.36E-03
114GO:0031540: regulation of anthocyanin biosynthetic process7.40E-03
115GO:0006102: isocitrate metabolic process7.40E-03
116GO:0010928: regulation of auxin mediated signaling pathway7.40E-03
117GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.40E-03
118GO:0009819: drought recovery7.40E-03
119GO:0009850: auxin metabolic process7.40E-03
120GO:0043068: positive regulation of programmed cell death7.40E-03
121GO:0051607: defense response to virus7.63E-03
122GO:0006952: defense response7.91E-03
123GO:0006997: nucleus organization8.49E-03
124GO:0017004: cytochrome complex assembly8.49E-03
125GO:0010208: pollen wall assembly8.49E-03
126GO:0010120: camalexin biosynthetic process8.49E-03
127GO:0010029: regulation of seed germination8.56E-03
128GO:0009737: response to abscisic acid9.11E-03
129GO:0015780: nucleotide-sugar transport9.65E-03
130GO:0007338: single fertilization9.65E-03
131GO:0019432: triglyceride biosynthetic process9.65E-03
132GO:0006810: transport1.04E-02
133GO:0008202: steroid metabolic process1.09E-02
134GO:1900426: positive regulation of defense response to bacterium1.09E-02
135GO:0009086: methionine biosynthetic process1.09E-02
136GO:0010380: regulation of chlorophyll biosynthetic process1.09E-02
137GO:0009407: toxin catabolic process1.17E-02
138GO:0006032: chitin catabolic process1.21E-02
139GO:0051555: flavonol biosynthetic process1.21E-02
140GO:0009870: defense response signaling pathway, resistance gene-dependent1.21E-02
141GO:0009684: indoleacetic acid biosynthetic process1.34E-02
142GO:0009867: jasmonic acid mediated signaling pathway1.34E-02
143GO:0019684: photosynthesis, light reaction1.34E-02
144GO:0009089: lysine biosynthetic process via diaminopimelate1.34E-02
145GO:0000266: mitochondrial fission1.48E-02
146GO:0045037: protein import into chloroplast stroma1.48E-02
147GO:0006839: mitochondrial transport1.53E-02
148GO:0006897: endocytosis1.60E-02
149GO:0006631: fatty acid metabolic process1.60E-02
150GO:2000028: regulation of photoperiodism, flowering1.62E-02
151GO:0018107: peptidyl-threonine phosphorylation1.62E-02
152GO:0006829: zinc II ion transport1.62E-02
153GO:2000012: regulation of auxin polar transport1.62E-02
154GO:0009753: response to jasmonic acid1.63E-02
155GO:0090351: seedling development1.91E-02
156GO:0009225: nucleotide-sugar metabolic process1.91E-02
157GO:0046688: response to copper ion1.91E-02
158GO:0007275: multicellular organism development1.93E-02
159GO:0050832: defense response to fungus1.95E-02
160GO:0000162: tryptophan biosynthetic process2.06E-02
161GO:0034976: response to endoplasmic reticulum stress2.06E-02
162GO:0031347: regulation of defense response2.11E-02
163GO:0045333: cellular respiration2.22E-02
164GO:0006289: nucleotide-excision repair2.22E-02
165GO:2000377: regulation of reactive oxygen species metabolic process2.22E-02
166GO:0030150: protein import into mitochondrial matrix2.22E-02
167GO:0006486: protein glycosylation2.34E-02
168GO:0006825: copper ion transport2.38E-02
169GO:0016998: cell wall macromolecule catabolic process2.55E-02
170GO:0006334: nucleosome assembly2.55E-02
171GO:0009269: response to desiccation2.55E-02
172GO:0031348: negative regulation of defense response2.72E-02
173GO:0009814: defense response, incompatible interaction2.72E-02
174GO:0009723: response to ethylene2.84E-02
175GO:0009625: response to insect2.89E-02
176GO:0009626: plant-type hypersensitive response2.96E-02
177GO:0046686: response to cadmium ion3.05E-02
178GO:0009620: response to fungus3.05E-02
179GO:0009306: protein secretion3.07E-02
180GO:0042127: regulation of cell proliferation3.07E-02
181GO:0080167: response to karrikin3.10E-02
182GO:0009624: response to nematode3.34E-02
183GO:0042391: regulation of membrane potential3.44E-02
184GO:0000271: polysaccharide biosynthetic process3.44E-02
185GO:0018105: peptidyl-serine phosphorylation3.44E-02
186GO:0009414: response to water deprivation3.49E-02
187GO:0009611: response to wounding3.54E-02
188GO:0010197: polar nucleus fusion3.63E-02
189GO:0010182: sugar mediated signaling pathway3.63E-02
190GO:0045489: pectin biosynthetic process3.63E-02
191GO:0006520: cellular amino acid metabolic process3.63E-02
192GO:0015979: photosynthesis3.65E-02
193GO:0006623: protein targeting to vacuole4.01E-02
194GO:0006635: fatty acid beta-oxidation4.21E-02
195GO:0071554: cell wall organization or biogenesis4.21E-02
196GO:0007264: small GTPase mediated signal transduction4.41E-02
197GO:0030163: protein catabolic process4.62E-02
198GO:0009567: double fertilization forming a zygote and endosperm4.83E-02
199GO:0055085: transmembrane transport4.84E-02
200GO:0009408: response to heat4.99E-02
RankGO TermAdjusted P value
1GO:0005212: structural constituent of eye lens0.00E+00
2GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
3GO:0033759: flavone synthase activity0.00E+00
4GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
5GO:0050334: thiaminase activity0.00E+00
6GO:0003978: UDP-glucose 4-epimerase activity3.00E-04
7GO:0102391: decanoate--CoA ligase activity3.00E-04
8GO:0004467: long-chain fatty acid-CoA ligase activity3.88E-04
9GO:2001147: camalexin binding4.13E-04
10GO:0015245: fatty acid transporter activity4.13E-04
11GO:0010285: L,L-diaminopimelate aminotransferase activity4.13E-04
12GO:0016920: pyroglutamyl-peptidase activity4.13E-04
13GO:2001227: quercitrin binding4.13E-04
14GO:0047150: betaine-homocysteine S-methyltransferase activity4.13E-04
15GO:0015297: antiporter activity5.92E-04
16GO:0015036: disulfide oxidoreductase activity8.93E-04
17GO:0048531: beta-1,3-galactosyltransferase activity8.93E-04
18GO:0003994: aconitate hydratase activity8.93E-04
19GO:0015152: glucose-6-phosphate transmembrane transporter activity8.93E-04
20GO:0032934: sterol binding8.93E-04
21GO:0050736: O-malonyltransferase activity8.93E-04
22GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity9.75E-04
23GO:0005509: calcium ion binding1.25E-03
24GO:0032403: protein complex binding1.45E-03
25GO:0071917: triose-phosphate transmembrane transporter activity1.45E-03
26GO:0005457: GDP-fucose transmembrane transporter activity1.45E-03
27GO:0003979: UDP-glucose 6-dehydrogenase activity1.45E-03
28GO:0004324: ferredoxin-NADP+ reductase activity1.45E-03
29GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity1.45E-03
30GO:0016531: copper chaperone activity1.45E-03
31GO:0010178: IAA-amino acid conjugate hydrolase activity2.10E-03
32GO:0017077: oxidative phosphorylation uncoupler activity2.10E-03
33GO:0035529: NADH pyrophosphatase activity2.10E-03
34GO:0030527: structural constituent of chromatin2.10E-03
35GO:0001046: core promoter sequence-specific DNA binding2.27E-03
36GO:0004930: G-protein coupled receptor activity2.82E-03
37GO:0009916: alternative oxidase activity2.82E-03
38GO:0015120: phosphoglycerate transmembrane transporter activity2.82E-03
39GO:0050373: UDP-arabinose 4-epimerase activity2.82E-03
40GO:0004834: tryptophan synthase activity2.82E-03
41GO:0005496: steroid binding3.61E-03
42GO:0047631: ADP-ribose diphosphatase activity3.61E-03
43GO:0005471: ATP:ADP antiporter activity3.61E-03
44GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.61E-03
45GO:0008519: ammonium transmembrane transporter activity4.47E-03
46GO:0000210: NAD+ diphosphatase activity4.47E-03
47GO:0004144: diacylglycerol O-acyltransferase activity5.38E-03
48GO:0005347: ATP transmembrane transporter activity5.38E-03
49GO:0004656: procollagen-proline 4-dioxygenase activity5.38E-03
50GO:0015217: ADP transmembrane transporter activity5.38E-03
51GO:0043565: sequence-specific DNA binding6.28E-03
52GO:0043295: glutathione binding6.36E-03
53GO:0016301: kinase activity6.91E-03
54GO:0008483: transaminase activity7.19E-03
55GO:0004708: MAP kinase kinase activity7.40E-03
56GO:0004714: transmembrane receptor protein tyrosine kinase activity7.40E-03
57GO:0047893: flavonol 3-O-glucosyltransferase activity7.40E-03
58GO:0004033: aldo-keto reductase (NADP) activity7.40E-03
59GO:0008142: oxysterol binding8.49E-03
60GO:0008375: acetylglucosaminyltransferase activity9.04E-03
61GO:0030247: polysaccharide binding9.54E-03
62GO:0015238: drug transmembrane transporter activity1.11E-02
63GO:0004568: chitinase activity1.21E-02
64GO:0004864: protein phosphatase inhibitor activity1.21E-02
65GO:0004713: protein tyrosine kinase activity1.21E-02
66GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.24E-02
67GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.34E-02
68GO:0005215: transporter activity1.60E-02
69GO:0004022: alcohol dehydrogenase (NAD) activity1.62E-02
70GO:0005315: inorganic phosphate transmembrane transporter activity1.62E-02
71GO:0004364: glutathione transferase activity1.67E-02
72GO:0030552: cAMP binding1.91E-02
73GO:0030553: cGMP binding1.91E-02
74GO:0008061: chitin binding1.91E-02
75GO:0003712: transcription cofactor activity1.91E-02
76GO:0005507: copper ion binding2.01E-02
77GO:0051287: NAD binding2.11E-02
78GO:0031418: L-ascorbic acid binding2.22E-02
79GO:0005216: ion channel activity2.38E-02
80GO:0008324: cation transmembrane transporter activity2.38E-02
81GO:0003682: chromatin binding2.54E-02
82GO:0035251: UDP-glucosyltransferase activity2.55E-02
83GO:0016757: transferase activity, transferring glycosyl groups2.63E-02
84GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.72E-02
85GO:0008810: cellulase activity2.89E-02
86GO:0003700: transcription factor activity, sequence-specific DNA binding3.05E-02
87GO:0004499: N,N-dimethylaniline monooxygenase activity3.07E-02
88GO:0005102: receptor binding3.25E-02
89GO:0005249: voltage-gated potassium channel activity3.44E-02
90GO:0015035: protein disulfide oxidoreductase activity3.44E-02
91GO:0030551: cyclic nucleotide binding3.44E-02
92GO:0046873: metal ion transmembrane transporter activity3.63E-02
93GO:0050662: coenzyme binding3.82E-02
94GO:0016758: transferase activity, transferring hexosyl groups4.06E-02
95GO:0004197: cysteine-type endopeptidase activity4.41E-02
96GO:0016740: transferase activity4.57E-02
97GO:0030170: pyridoxal phosphate binding4.62E-02
RankGO TermAdjusted P value
1GO:0016021: integral component of membrane1.91E-08
2GO:0005743: mitochondrial inner membrane5.39E-06
3GO:0005886: plasma membrane1.02E-04
4GO:0005794: Golgi apparatus1.03E-04
5GO:0000813: ESCRT I complex1.56E-04
6GO:0005901: caveola8.93E-04
7GO:0031314: extrinsic component of mitochondrial inner membrane8.93E-04
8GO:0030658: transport vesicle membrane2.10E-03
9GO:0000164: protein phosphatase type 1 complex3.61E-03
10GO:0005779: integral component of peroxisomal membrane8.49E-03
11GO:0030665: clathrin-coated vesicle membrane1.09E-02
12GO:0005789: endoplasmic reticulum membrane1.13E-02
13GO:0005774: vacuolar membrane1.19E-02
14GO:0005740: mitochondrial envelope1.21E-02
15GO:0017119: Golgi transport complex1.21E-02
16GO:0005777: peroxisome1.39E-02
17GO:0005795: Golgi stack1.91E-02
18GO:0046658: anchored component of plasma membrane1.94E-02
19GO:0005758: mitochondrial intermembrane space2.22E-02
20GO:0009506: plasmodesma2.31E-02
21GO:0000139: Golgi membrane2.35E-02
22GO:0070469: respiratory chain2.38E-02
23GO:0005802: trans-Golgi network2.46E-02
24GO:0005741: mitochondrial outer membrane2.55E-02
25GO:0005768: endosome3.05E-02
26GO:0005744: mitochondrial inner membrane presequence translocase complex3.07E-02
27GO:0009706: chloroplast inner membrane3.34E-02
28GO:0009504: cell plate4.01E-02
29GO:0031965: nuclear membrane4.01E-02
30GO:0000785: chromatin4.41E-02
31GO:0016592: mediator complex4.41E-02
32GO:0032580: Golgi cisterna membrane4.83E-02
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Gene type



Gene DE type