Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0017038: protein import0.00E+00
9GO:0015805: S-adenosyl-L-methionine transport0.00E+00
10GO:0018023: peptidyl-lysine trimethylation0.00E+00
11GO:0015995: chlorophyll biosynthetic process5.68E-09
12GO:0005983: starch catabolic process1.16E-06
13GO:0018026: peptidyl-lysine monomethylation4.41E-06
14GO:0009658: chloroplast organization1.52E-05
15GO:0019252: starch biosynthetic process2.70E-05
16GO:0006633: fatty acid biosynthetic process3.17E-05
17GO:2000012: regulation of auxin polar transport5.95E-05
18GO:0042793: transcription from plastid promoter1.43E-04
19GO:0040008: regulation of growth2.74E-04
20GO:0005991: trehalose metabolic process3.11E-04
21GO:0000023: maltose metabolic process3.11E-04
22GO:0000025: maltose catabolic process3.11E-04
23GO:0005980: glycogen catabolic process3.11E-04
24GO:0030198: extracellular matrix organization3.11E-04
25GO:0010442: guard cell morphogenesis3.11E-04
26GO:0010480: microsporocyte differentiation3.11E-04
27GO:0042759: long-chain fatty acid biosynthetic process3.11E-04
28GO:0042371: vitamin K biosynthetic process3.11E-04
29GO:0043686: co-translational protein modification3.11E-04
30GO:0043007: maintenance of rDNA3.11E-04
31GO:0005978: glycogen biosynthetic process3.21E-04
32GO:0032544: plastid translation3.94E-04
33GO:0006783: heme biosynthetic process4.73E-04
34GO:0006782: protoporphyrinogen IX biosynthetic process6.53E-04
35GO:0010027: thylakoid membrane organization6.71E-04
36GO:0010270: photosystem II oxygen evolving complex assembly6.81E-04
37GO:0010275: NAD(P)H dehydrogenase complex assembly6.81E-04
38GO:0052541: plant-type cell wall cellulose metabolic process6.81E-04
39GO:0009629: response to gravity6.81E-04
40GO:0019388: galactose catabolic process6.81E-04
41GO:0006423: cysteinyl-tRNA aminoacylation6.81E-04
42GO:0007154: cell communication6.81E-04
43GO:0071497: cellular response to freezing6.81E-04
44GO:0006006: glucose metabolic process9.73E-04
45GO:0010020: chloroplast fission1.09E-03
46GO:2001295: malonyl-CoA biosynthetic process1.10E-03
47GO:0009102: biotin biosynthetic process1.58E-03
48GO:0006241: CTP biosynthetic process1.58E-03
49GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.58E-03
50GO:0009647: skotomorphogenesis1.58E-03
51GO:0006165: nucleoside diphosphate phosphorylation1.58E-03
52GO:0006228: UTP biosynthetic process1.58E-03
53GO:0010731: protein glutathionylation1.58E-03
54GO:0046739: transport of virus in multicellular host1.58E-03
55GO:0009590: detection of gravity1.58E-03
56GO:0043572: plastid fission1.58E-03
57GO:0009640: photomorphogenesis1.73E-03
58GO:0061077: chaperone-mediated protein folding1.82E-03
59GO:0016042: lipid catabolic process1.82E-03
60GO:0019464: glycine decarboxylation via glycine cleavage system2.12E-03
61GO:0006183: GTP biosynthetic process2.12E-03
62GO:0022622: root system development2.12E-03
63GO:0006808: regulation of nitrogen utilization2.12E-03
64GO:1901141: regulation of lignin biosynthetic process2.12E-03
65GO:0010109: regulation of photosynthesis2.12E-03
66GO:0000304: response to singlet oxygen2.71E-03
67GO:0016120: carotene biosynthetic process2.71E-03
68GO:0010236: plastoquinone biosynthetic process2.71E-03
69GO:0031365: N-terminal protein amino acid modification2.71E-03
70GO:0010182: sugar mediated signaling pathway2.98E-03
71GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.35E-03
72GO:0009959: negative gravitropism3.35E-03
73GO:0000470: maturation of LSU-rRNA3.35E-03
74GO:0006828: manganese ion transport3.35E-03
75GO:0018258: protein O-linked glycosylation via hydroxyproline3.35E-03
76GO:0006014: D-ribose metabolic process3.35E-03
77GO:0010405: arabinogalactan protein metabolic process3.35E-03
78GO:0009734: auxin-activated signaling pathway3.51E-03
79GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.68E-03
80GO:0009740: gibberellic acid mediated signaling pathway3.68E-03
81GO:0042372: phylloquinone biosynthetic process4.03E-03
82GO:0042026: protein refolding4.03E-03
83GO:0006458: 'de novo' protein folding4.03E-03
84GO:2000033: regulation of seed dormancy process4.03E-03
85GO:0030488: tRNA methylation4.03E-03
86GO:0009742: brassinosteroid mediated signaling pathway4.28E-03
87GO:0005975: carbohydrate metabolic process4.50E-03
88GO:0009772: photosynthetic electron transport in photosystem II4.76E-03
89GO:0048437: floral organ development4.76E-03
90GO:0010444: guard mother cell differentiation4.76E-03
91GO:0030307: positive regulation of cell growth4.76E-03
92GO:0032880: regulation of protein localization4.76E-03
93GO:0010161: red light signaling pathway4.76E-03
94GO:0015979: photosynthesis5.24E-03
95GO:0006353: DNA-templated transcription, termination5.53E-03
96GO:0070413: trehalose metabolism in response to stress5.53E-03
97GO:0006605: protein targeting5.53E-03
98GO:0009231: riboflavin biosynthetic process5.53E-03
99GO:0010099: regulation of photomorphogenesis6.33E-03
100GO:0010497: plasmodesmata-mediated intercellular transport6.33E-03
101GO:0010100: negative regulation of photomorphogenesis6.33E-03
102GO:0006526: arginine biosynthetic process6.33E-03
103GO:0009790: embryo development6.44E-03
104GO:0009817: defense response to fungus, incompatible interaction6.93E-03
105GO:0010206: photosystem II repair7.19E-03
106GO:0046916: cellular transition metal ion homeostasis7.19E-03
107GO:0009638: phototropism8.07E-03
108GO:0043067: regulation of programmed cell death8.07E-03
109GO:0006779: porphyrin-containing compound biosynthetic process8.07E-03
110GO:0006457: protein folding8.25E-03
111GO:0010162: seed dormancy process9.00E-03
112GO:0045036: protein targeting to chloroplast9.00E-03
113GO:0009641: shade avoidance9.00E-03
114GO:0006816: calcium ion transport9.96E-03
115GO:0009773: photosynthetic electron transport in photosystem I9.96E-03
116GO:0009073: aromatic amino acid family biosynthetic process9.96E-03
117GO:0006415: translational termination9.96E-03
118GO:0048229: gametophyte development9.96E-03
119GO:0006631: fatty acid metabolic process1.05E-02
120GO:0010102: lateral root morphogenesis1.20E-02
121GO:0050826: response to freezing1.20E-02
122GO:0010075: regulation of meristem growth1.20E-02
123GO:0010207: photosystem II assembly1.31E-02
124GO:0009266: response to temperature stimulus1.31E-02
125GO:0009934: regulation of meristem structural organization1.31E-02
126GO:0042254: ribosome biogenesis1.42E-02
127GO:0010025: wax biosynthetic process1.53E-02
128GO:0006071: glycerol metabolic process1.53E-02
129GO:0009585: red, far-red light phototransduction1.54E-02
130GO:0010187: negative regulation of seed germination1.65E-02
131GO:0051017: actin filament bundle assembly1.65E-02
132GO:0005992: trehalose biosynthetic process1.65E-02
133GO:0006418: tRNA aminoacylation for protein translation1.77E-02
134GO:0010026: trichome differentiation1.77E-02
135GO:0009768: photosynthesis, light harvesting in photosystem I1.77E-02
136GO:0031408: oxylipin biosynthetic process1.89E-02
137GO:0048511: rhythmic process1.89E-02
138GO:0030245: cellulose catabolic process2.01E-02
139GO:0006730: one-carbon metabolic process2.01E-02
140GO:0006508: proteolysis2.02E-02
141GO:0009686: gibberellin biosynthetic process2.14E-02
142GO:0009411: response to UV2.14E-02
143GO:0008284: positive regulation of cell proliferation2.41E-02
144GO:0048653: anther development2.55E-02
145GO:0000413: protein peptidyl-prolyl isomerization2.55E-02
146GO:0009958: positive gravitropism2.68E-02
147GO:0006520: cellular amino acid metabolic process2.68E-02
148GO:0006662: glycerol ether metabolic process2.68E-02
149GO:0010197: polar nucleus fusion2.68E-02
150GO:0009741: response to brassinosteroid2.68E-02
151GO:0009646: response to absence of light2.83E-02
152GO:0048544: recognition of pollen2.83E-02
153GO:0042752: regulation of circadian rhythm2.83E-02
154GO:0006629: lipid metabolic process2.98E-02
155GO:0071554: cell wall organization or biogenesis3.12E-02
156GO:0010583: response to cyclopentenone3.27E-02
157GO:0032502: developmental process3.27E-02
158GO:0008152: metabolic process3.36E-02
159GO:0010090: trichome morphogenesis3.42E-02
160GO:1901657: glycosyl compound metabolic process3.42E-02
161GO:0007623: circadian rhythm3.78E-02
162GO:0009607: response to biotic stimulus4.22E-02
163GO:0010029: regulation of seed germination4.22E-02
164GO:0048481: plant ovule development4.89E-02
RankGO TermAdjusted P value
1GO:0005201: extracellular matrix structural constituent0.00E+00
2GO:0004076: biotin synthase activity0.00E+00
3GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
4GO:0005363: maltose transmembrane transporter activity0.00E+00
5GO:0090711: FMN hydrolase activity0.00E+00
6GO:0010303: limit dextrinase activity0.00E+00
7GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0051060: pullulanase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity0.00E+00
12GO:0047661: amino-acid racemase activity0.00E+00
13GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
14GO:0016630: protochlorophyllide reductase activity4.41E-06
15GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.27E-05
16GO:0016279: protein-lysine N-methyltransferase activity6.26E-05
17GO:0003989: acetyl-CoA carboxylase activity9.88E-05
18GO:0005528: FK506 binding1.19E-04
19GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.11E-04
20GO:0050139: nicotinate-N-glucosyltransferase activity3.11E-04
21GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.11E-04
22GO:0008184: glycogen phosphorylase activity3.11E-04
23GO:0050308: sugar-phosphatase activity3.11E-04
24GO:0004856: xylulokinase activity3.11E-04
25GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity3.11E-04
26GO:0004134: 4-alpha-glucanotransferase activity3.11E-04
27GO:0004645: phosphorylase activity3.11E-04
28GO:0004853: uroporphyrinogen decarboxylase activity3.11E-04
29GO:0009374: biotin binding3.11E-04
30GO:0042586: peptide deformylase activity3.11E-04
31GO:0019203: carbohydrate phosphatase activity3.11E-04
32GO:0010313: phytochrome binding3.11E-04
33GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.11E-04
34GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.11E-04
35GO:0004817: cysteine-tRNA ligase activity6.81E-04
36GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity6.81E-04
37GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity6.81E-04
38GO:0004614: phosphoglucomutase activity6.81E-04
39GO:0019843: rRNA binding9.76E-04
40GO:0008266: poly(U) RNA binding1.09E-03
41GO:0015462: ATPase-coupled protein transmembrane transporter activity1.10E-03
42GO:0070330: aromatase activity1.10E-03
43GO:0017150: tRNA dihydrouridine synthase activity1.10E-03
44GO:0002161: aminoacyl-tRNA editing activity1.10E-03
45GO:0005504: fatty acid binding1.10E-03
46GO:0004075: biotin carboxylase activity1.10E-03
47GO:0045174: glutathione dehydrogenase (ascorbate) activity1.10E-03
48GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.10E-03
49GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.58E-03
50GO:0004375: glycine dehydrogenase (decarboxylating) activity1.58E-03
51GO:0016149: translation release factor activity, codon specific1.58E-03
52GO:0016851: magnesium chelatase activity1.58E-03
53GO:0004550: nucleoside diphosphate kinase activity1.58E-03
54GO:0043023: ribosomal large subunit binding1.58E-03
55GO:0008097: 5S rRNA binding1.58E-03
56GO:0045430: chalcone isomerase activity2.12E-03
57GO:0008878: glucose-1-phosphate adenylyltransferase activity2.12E-03
58GO:0004659: prenyltransferase activity2.12E-03
59GO:0003959: NADPH dehydrogenase activity2.71E-03
60GO:0016773: phosphotransferase activity, alcohol group as acceptor2.71E-03
61GO:0018685: alkane 1-monooxygenase activity2.71E-03
62GO:1990714: hydroxyproline O-galactosyltransferase activity3.35E-03
63GO:0004556: alpha-amylase activity3.35E-03
64GO:2001070: starch binding3.35E-03
65GO:0046983: protein dimerization activity3.41E-03
66GO:0004747: ribokinase activity4.03E-03
67GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.03E-03
68GO:0008237: metallopeptidase activity4.73E-03
69GO:0052689: carboxylic ester hydrolase activity4.99E-03
70GO:0008865: fructokinase activity5.53E-03
71GO:0046914: transition metal ion binding6.33E-03
72GO:0008173: RNA methyltransferase activity6.33E-03
73GO:0008889: glycerophosphodiester phosphodiesterase activity7.19E-03
74GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.19E-03
75GO:0003747: translation release factor activity7.19E-03
76GO:0004222: metalloendopeptidase activity7.65E-03
77GO:0005384: manganese ion transmembrane transporter activity8.07E-03
78GO:0009055: electron carrier activity8.63E-03
79GO:0005507: copper ion binding9.74E-03
80GO:0047372: acylglycerol lipase activity9.96E-03
81GO:0044183: protein binding involved in protein folding9.96E-03
82GO:0000049: tRNA binding1.10E-02
83GO:0004089: carbonate dehydratase activity1.20E-02
84GO:0015095: magnesium ion transmembrane transporter activity1.20E-02
85GO:0031072: heat shock protein binding1.20E-02
86GO:0043621: protein self-association1.23E-02
87GO:0008083: growth factor activity1.31E-02
88GO:0000287: magnesium ion binding1.36E-02
89GO:0016788: hydrolase activity, acting on ester bonds1.42E-02
90GO:0031409: pigment binding1.53E-02
91GO:0016298: lipase activity1.59E-02
92GO:0043424: protein histidine kinase binding1.77E-02
93GO:0004176: ATP-dependent peptidase activity1.89E-02
94GO:0033612: receptor serine/threonine kinase binding1.89E-02
95GO:0008810: cellulase activity2.14E-02
96GO:0051082: unfolded protein binding2.19E-02
97GO:0003727: single-stranded RNA binding2.27E-02
98GO:0004812: aminoacyl-tRNA ligase activity2.41E-02
99GO:0005102: receptor binding2.41E-02
100GO:0047134: protein-disulfide reductase activity2.41E-02
101GO:0001085: RNA polymerase II transcription factor binding2.68E-02
102GO:0004791: thioredoxin-disulfide reductase activity2.83E-02
103GO:0003924: GTPase activity2.98E-02
104GO:0030170: pyridoxal phosphate binding3.05E-02
105GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.12E-02
106GO:0000156: phosphorelay response regulator activity3.42E-02
107GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.42E-02
108GO:0051015: actin filament binding3.42E-02
109GO:0016791: phosphatase activity3.58E-02
110GO:0008483: transaminase activity3.73E-02
111GO:0005525: GTP binding3.83E-02
112GO:0016413: O-acetyltransferase activity3.89E-02
113GO:0016597: amino acid binding3.89E-02
114GO:0016168: chlorophyll binding4.22E-02
115GO:0102483: scopolin beta-glucosidase activity4.55E-02
116GO:0008236: serine-type peptidase activity4.72E-02
117GO:0042802: identical protein binding4.79E-02
118GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.89E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0010170: glucose-1-phosphate adenylyltransferase complex0.00E+00
3GO:0009507: chloroplast2.39E-34
4GO:0009570: chloroplast stroma6.33E-27
5GO:0009941: chloroplast envelope1.80E-17
6GO:0009534: chloroplast thylakoid2.03E-12
7GO:0009535: chloroplast thylakoid membrane5.09E-11
8GO:0009579: thylakoid4.13E-07
9GO:0031969: chloroplast membrane3.07E-06
10GO:0009543: chloroplast thylakoid lumen1.70E-05
11GO:0009536: plastid2.69E-04
12GO:0009547: plastid ribosome3.11E-04
13GO:0046658: anchored component of plasma membrane5.03E-04
14GO:0000427: plastid-encoded plastid RNA polymerase complex6.81E-04
15GO:0009706: chloroplast inner membrane6.95E-04
16GO:0009508: plastid chromosome9.73E-04
17GO:0019897: extrinsic component of plasma membrane1.10E-03
18GO:0010007: magnesium chelatase complex1.10E-03
19GO:0009317: acetyl-CoA carboxylase complex1.10E-03
20GO:0031977: thylakoid lumen1.56E-03
21GO:0005960: glycine cleavage complex1.58E-03
22GO:0010319: stromule4.73E-03
23GO:0009295: nucleoid4.73E-03
24GO:0009533: chloroplast stromal thylakoid4.76E-03
25GO:0009501: amyloplast5.53E-03
26GO:0009707: chloroplast outer membrane6.93E-03
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.19E-03
28GO:0090404: pollen tube tip9.96E-03
29GO:0000311: plastid large ribosomal subunit1.10E-02
30GO:0030076: light-harvesting complex1.42E-02
31GO:0043234: protein complex1.53E-02
32GO:0005840: ribosome1.94E-02
33GO:0015629: actin cytoskeleton2.14E-02
34GO:0031225: anchored component of membrane3.55E-02
35GO:0030529: intracellular ribonucleoprotein complex4.05E-02
36GO:0005615: extracellular space4.23E-02
37GO:0005667: transcription factor complex4.38E-02
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Gene type



Gene DE type