co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045176: apical protein localization	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
4	GO:0046620: regulation of organ growth	9.03E-06
5	GO:0009733: response to auxin	2.23E-04
6	GO:0040008: regulation of growth	2.87E-04
7	GO:0006285: base-excision repair, AP site formation	3.17E-04
8	GO:0009090: homoserine biosynthetic process	3.17E-04
9	GO:0034757: negative regulation of iron ion transport	3.17E-04
10	GO:0000373: Group II intron splicing	4.84E-04
11	GO:0010271: regulation of chlorophyll catabolic process	6.92E-04
12	GO:1900033: negative regulation of trichome patterning	6.92E-04
13	GO:0010582: floral meristem determinacy	8.79E-04
14	GO:0009734: auxin-activated signaling pathway	9.57E-04
15	GO:0009725: response to hormone	9.95E-04
16	GO:0080117: secondary growth	1.12E-03
17	GO:0071398: cellular response to fatty acid	1.12E-03
18	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.12E-03
19	GO:0009067: aspartate family amino acid biosynthetic process	1.61E-03
20	GO:0010371: regulation of gibberellin biosynthetic process	1.61E-03
21	GO:0051513: regulation of monopolar cell growth	1.61E-03
22	GO:0051639: actin filament network formation	1.61E-03
23	GO:0034059: response to anoxia	1.61E-03
24	GO:1990019: protein storage vacuole organization	1.61E-03
25	GO:0009926: auxin polar transport	1.78E-03
26	GO:0010431: seed maturation	1.86E-03
27	GO:0042546: cell wall biogenesis	1.88E-03
28	GO:0009755: hormone-mediated signaling pathway	2.16E-03
29	GO:0048629: trichome patterning	2.16E-03
30	GO:0051764: actin crosslink formation	2.16E-03
31	GO:0006284: base-excision repair	2.42E-03
32	GO:0080110: sporopollenin biosynthetic process	2.76E-03
33	GO:0016131: brassinosteroid metabolic process	2.76E-03
34	GO:0009107: lipoate biosynthetic process	2.76E-03
35	GO:0010438: cellular response to sulfur starvation	2.76E-03
36	GO:0010158: abaxial cell fate specification	2.76E-03
37	GO:0045487: gibberellin catabolic process	2.76E-03
38	GO:0010087: phloem or xylem histogenesis	2.83E-03
39	GO:0009741: response to brassinosteroid	3.05E-03
40	GO:0010268: brassinosteroid homeostasis	3.05E-03
41	GO:1902456: regulation of stomatal opening	3.40E-03
42	GO:0048831: regulation of shoot system development	3.40E-03
43	GO:0010190: cytochrome b6f complex assembly	3.40E-03
44	GO:0003006: developmental process involved in reproduction	3.40E-03
45	GO:0048827: phyllome development	3.40E-03
46	GO:0010358: leaf shaping	3.40E-03
47	GO:0009082: branched-chain amino acid biosynthetic process	4.10E-03
48	GO:0048509: regulation of meristem development	4.10E-03
49	GO:0009099: valine biosynthetic process	4.10E-03
50	GO:0009088: threonine biosynthetic process	4.10E-03
51	GO:0031930: mitochondria-nucleus signaling pathway	4.10E-03
52	GO:0010098: suspensor development	4.84E-03
53	GO:0006955: immune response	4.84E-03
54	GO:0010050: vegetative phase change	4.84E-03
55	GO:0009911: positive regulation of flower development	5.44E-03
56	GO:0009416: response to light stimulus	5.48E-03
57	GO:0006402: mRNA catabolic process	5.62E-03
58	GO:0010439: regulation of glucosinolate biosynthetic process	5.62E-03
59	GO:0009850: auxin metabolic process	5.62E-03
60	GO:0009690: cytokinin metabolic process	5.62E-03
61	GO:2000070: regulation of response to water deprivation	5.62E-03
62	GO:0009819: drought recovery	5.62E-03
63	GO:0010411: xyloglucan metabolic process	6.41E-03
64	GO:0009097: isoleucine biosynthetic process	6.44E-03
65	GO:0007186: G-protein coupled receptor signaling pathway	6.44E-03
66	GO:0009657: plastid organization	6.44E-03
67	GO:0009051: pentose-phosphate shunt, oxidative branch	7.30E-03
68	GO:0006098: pentose-phosphate shunt	7.30E-03
69	GO:0048507: meristem development	7.30E-03
70	GO:0000160: phosphorelay signal transduction system	7.46E-03
71	GO:0009098: leucine biosynthetic process	8.21E-03
72	GO:0010018: far-red light signaling pathway	8.21E-03
73	GO:0009086: methionine biosynthetic process	8.21E-03
74	GO:0009867: jasmonic acid mediated signaling pathway	9.01E-03
75	GO:0009299: mRNA transcription	9.15E-03
76	GO:0009870: defense response signaling pathway, resistance gene-dependent	9.15E-03
77	GO:0009089: lysine biosynthetic process via diaminopimelate	1.01E-02
78	GO:0009682: induced systemic resistance	1.01E-02
79	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.11E-02
80	GO:0006006: glucose metabolic process	1.22E-02
81	GO:2000028: regulation of photoperiodism, flowering	1.22E-02
82	GO:0010229: inflorescence development	1.22E-02
83	GO:0006094: gluconeogenesis	1.22E-02
84	GO:0010588: cotyledon vascular tissue pattern formation	1.22E-02
85	GO:0010102: lateral root morphogenesis	1.22E-02
86	GO:0009636: response to toxic substance	1.31E-02
87	GO:0010207: photosystem II assembly	1.33E-02
88	GO:0010540: basipetal auxin transport	1.33E-02
89	GO:0048467: gynoecium development	1.33E-02
90	GO:0010020: chloroplast fission	1.33E-02
91	GO:0042753: positive regulation of circadian rhythm	1.56E-02
92	GO:0006863: purine nucleobase transport	1.56E-02
93	GO:0019762: glucosinolate catabolic process	1.56E-02
94	GO:0009736: cytokinin-activated signaling pathway	1.57E-02
95	GO:0080147: root hair cell development	1.67E-02
96	GO:0051017: actin filament bundle assembly	1.67E-02
97	GO:0005992: trehalose biosynthetic process	1.67E-02
98	GO:0016114: terpenoid biosynthetic process	1.92E-02
99	GO:0016998: cell wall macromolecule catabolic process	1.92E-02
100	GO:0048316: seed development	1.92E-02
101	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.96E-02
102	GO:0010082: regulation of root meristem growth	2.18E-02
103	GO:0009625: response to insect	2.18E-02
104	GO:0009693: ethylene biosynthetic process	2.18E-02
105	GO:0071215: cellular response to abscisic acid stimulus	2.18E-02
106	GO:0009686: gibberellin biosynthetic process	2.18E-02
107	GO:0010584: pollen exine formation	2.31E-02
108	GO:0070417: cellular response to cold	2.45E-02
109	GO:0080022: primary root development	2.59E-02
110	GO:0010118: stomatal movement	2.59E-02
111	GO:0010182: sugar mediated signaling pathway	2.73E-02
112	GO:0010305: leaf vascular tissue pattern formation	2.73E-02
113	GO:0048544: recognition of pollen	2.88E-02
114	GO:0048825: cotyledon development	3.02E-02
115	GO:0000302: response to reactive oxygen species	3.17E-02
116	GO:0016132: brassinosteroid biosynthetic process	3.17E-02
117	GO:0071554: cell wall organization or biogenesis	3.17E-02
118	GO:0010583: response to cyclopentenone	3.32E-02
119	GO:0019761: glucosinolate biosynthetic process	3.32E-02
120	GO:0032502: developmental process	3.32E-02
121	GO:0009753: response to jasmonic acid	3.35E-02
122	GO:0016310: phosphorylation	3.37E-02
123	GO:0009639: response to red or far red light	3.64E-02
124	GO:0006464: cellular protein modification process	3.64E-02
125	GO:0016125: sterol metabolic process	3.64E-02
126	GO:0051607: defense response to virus	3.96E-02
127	GO:0001666: response to hypoxia	4.12E-02
128	GO:0010029: regulation of seed germination	4.29E-02
129	GO:0007166: cell surface receptor signaling pathway	4.42E-02
130	GO:0048573: photoperiodism, flowering	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0008395: steroid hydroxylase activity	3.17E-04
3	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	3.17E-04
4	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.17E-04
5	GO:0010012: steroid 22-alpha hydroxylase activity	3.17E-04
6	GO:0005227: calcium activated cation channel activity	3.17E-04
7	GO:0042834: peptidoglycan binding	3.17E-04
8	GO:0017118: lipoyltransferase activity	6.92E-04
9	GO:0045543: gibberellin 2-beta-dioxygenase activity	6.92E-04
10	GO:0043425: bHLH transcription factor binding	6.92E-04
11	GO:0016415: octanoyltransferase activity	6.92E-04
12	GO:0004412: homoserine dehydrogenase activity	6.92E-04
13	GO:0050736: O-malonyltransferase activity	6.92E-04
14	GO:0009884: cytokinin receptor activity	6.92E-04
15	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.12E-03
16	GO:0005034: osmosensor activity	1.12E-03
17	GO:0052692: raffinose alpha-galactosidase activity	1.12E-03
18	GO:0004557: alpha-galactosidase activity	1.12E-03
19	GO:0004871: signal transducer activity	1.50E-03
20	GO:0052656: L-isoleucine transaminase activity	1.61E-03
21	GO:0052654: L-leucine transaminase activity	1.61E-03
22	GO:0052655: L-valine transaminase activity	1.61E-03
23	GO:0001872: (1->3)-beta-D-glucan binding	1.61E-03
24	GO:0004072: aspartate kinase activity	1.61E-03
25	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.61E-03
26	GO:0005345: purine nucleobase transmembrane transporter activity	1.70E-03
27	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.16E-03
28	GO:0019104: DNA N-glycosylase activity	2.16E-03
29	GO:0004084: branched-chain-amino-acid transaminase activity	2.16E-03
30	GO:0008725: DNA-3-methyladenine glycosylase activity	2.76E-03
31	GO:0016688: L-ascorbate peroxidase activity	3.40E-03
32	GO:0004332: fructose-bisphosphate aldolase activity	3.40E-03
33	GO:0004709: MAP kinase kinase kinase activity	3.40E-03
34	GO:0004130: cytochrome-c peroxidase activity	3.40E-03
35	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.76E-03
36	GO:0019900: kinase binding	4.10E-03
37	GO:0016832: aldehyde-lyase activity	4.10E-03
38	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.63E-03
39	GO:0016798: hydrolase activity, acting on glycosyl bonds	6.41E-03
40	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.30E-03
41	GO:0004673: protein histidine kinase activity	9.15E-03
42	GO:0004805: trehalose-phosphatase activity	9.15E-03
43	GO:0030234: enzyme regulator activity	9.15E-03
44	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.01E-02
45	GO:0050661: NADP binding	1.03E-02
46	GO:0003674: molecular_function	1.18E-02
47	GO:0000155: phosphorelay sensor kinase activity	1.22E-02
48	GO:0043621: protein self-association	1.26E-02
49	GO:0031418: L-ascorbic acid binding	1.67E-02
50	GO:0043424: protein histidine kinase binding	1.80E-02
51	GO:0003964: RNA-directed DNA polymerase activity	1.92E-02
52	GO:0010333: terpene synthase activity	1.92E-02
53	GO:0005199: structural constituent of cell wall	2.73E-02
54	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.73E-02
55	GO:0050662: coenzyme binding	2.88E-02
56	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.88E-02
57	GO:0004872: receptor activity	3.02E-02
58	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.17E-02
59	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.20E-02
60	GO:0000156: phosphorelay response regulator activity	3.48E-02
61	GO:0051015: actin filament binding	3.48E-02
62	GO:0004672: protein kinase activity	3.54E-02
63	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.61E-02
64	GO:0016413: O-acetyltransferase activity	3.96E-02
65	GO:0016597: amino acid binding	3.96E-02
66	GO:0051213: dioxygenase activity	4.12E-02
67	GO:0030247: polysaccharide binding	4.63E-02
68	GO:0042802: identical protein binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0032432: actin filament bundle	1.61E-03
3	GO:0010494: cytoplasmic stress granule	7.30E-03
4	GO:0042644: chloroplast nucleoid	7.30E-03
5	GO:0005884: actin filament	1.01E-02
6	GO:0046658: anchored component of plasma membrane	1.17E-02
7	GO:0005578: proteinaceous extracellular matrix	1.22E-02
8	GO:0030095: chloroplast photosystem II	1.33E-02
9	GO:0042651: thylakoid membrane	1.80E-02
10	GO:0009654: photosystem II oxygen evolving complex	1.80E-02
11	GO:0005770: late endosome	2.73E-02
12	GO:0019898: extrinsic component of membrane	3.02E-02
13	GO:0009504: cell plate	3.02E-02
14	GO:0031225: anchored component of membrane	3.67E-02
15	GO:0030529: intracellular ribonucleoprotein complex	4.12E-02
16	GO:0000932: P-body	4.12E-02
17	GO:0000151: ubiquitin ligase complex	4.98E-02
18	GO:0009707: chloroplast outer membrane	4.98E-02