co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0010055: atrichoblast differentiation	0.00E+00
3	GO:0006654: phosphatidic acid biosynthetic process	0.00E+00
4	GO:1902289: negative regulation of defense response to oomycetes	0.00E+00
5	GO:0005993: trehalose catabolic process	0.00E+00
6	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
7	GO:2000378: negative regulation of reactive oxygen species metabolic process	0.00E+00
8	GO:0052386: cell wall thickening	0.00E+00
9	GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress	0.00E+00
10	GO:0090400: stress-induced premature senescence	0.00E+00
11	GO:1902009: positive regulation of toxin transport	0.00E+00
12	GO:0018063: cytochrome c-heme linkage	0.00E+00
13	GO:0051553: flavone biosynthetic process	0.00E+00
14	GO:1904250: positive regulation of age-related resistance	0.00E+00
15	GO:2000068: regulation of defense response to insect	0.00E+00
16	GO:0006605: protein targeting	1.05E-05
17	GO:0009620: response to fungus	1.05E-04
18	GO:0000162: tryptophan biosynthetic process	1.20E-04
19	GO:0009759: indole glucosinolate biosynthetic process	1.62E-04
20	GO:1900057: positive regulation of leaf senescence	2.86E-04
21	GO:1902074: response to salt	2.86E-04
22	GO:1990641: response to iron ion starvation	3.37E-04
23	GO:0019567: arabinose biosynthetic process	3.37E-04
24	GO:0046246: terpene biosynthetic process	3.37E-04
25	GO:0051090: regulation of sequence-specific DNA binding transcription factor activity	3.37E-04
26	GO:0006680: glucosylceramide catabolic process	3.37E-04
27	GO:0019478: D-amino acid catabolic process	3.37E-04
28	GO:0032107: regulation of response to nutrient levels	3.37E-04
29	GO:0006102: isocitrate metabolic process	3.60E-04
30	GO:0010150: leaf senescence	3.72E-04
31	GO:0015031: protein transport	4.13E-04
32	GO:0009617: response to bacterium	5.14E-04
33	GO:0008202: steroid metabolic process	6.25E-04
34	GO:0051607: defense response to virus	7.22E-04
35	GO:0080151: positive regulation of salicylic acid mediated signaling pathway	7.34E-04
36	GO:0006568: tryptophan metabolic process	7.34E-04
37	GO:0042853: L-alanine catabolic process	7.34E-04
38	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	7.34E-04
39	GO:0006101: citrate metabolic process	7.34E-04
40	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	7.34E-04
41	GO:0009816: defense response to bacterium, incompatible interaction	8.32E-04
42	GO:0045037: protein import into chloroplast stroma	9.59E-04
43	GO:0032504: multicellular organism reproduction	1.19E-03
44	GO:0010476: gibberellin mediated signaling pathway	1.19E-03
45	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.19E-03
46	GO:0009410: response to xenobiotic stimulus	1.19E-03
47	GO:0010272: response to silver ion	1.19E-03
48	GO:0051091: positive regulation of sequence-specific DNA binding transcription factor activity	1.19E-03
49	GO:0006556: S-adenosylmethionine biosynthetic process	1.19E-03
50	GO:0080163: regulation of protein serine/threonine phosphatase activity	1.19E-03
51	GO:0071398: cellular response to fatty acid	1.19E-03
52	GO:0072661: protein targeting to plasma membrane	1.19E-03
53	GO:0006099: tricarboxylic acid cycle	1.54E-03
54	GO:0030150: protein import into mitochondrial matrix	1.68E-03
55	GO:0070301: cellular response to hydrogen peroxide	1.71E-03
56	GO:0002239: response to oomycetes	1.71E-03
57	GO:0009963: positive regulation of flavonoid biosynthetic process	1.71E-03
58	GO:0071323: cellular response to chitin	1.71E-03
59	GO:0080024: indolebutyric acid metabolic process	1.71E-03
60	GO:0055070: copper ion homeostasis	1.71E-03
61	GO:0001676: long-chain fatty acid metabolic process	1.71E-03
62	GO:0010116: positive regulation of abscisic acid biosynthetic process	1.71E-03
63	GO:0006886: intracellular protein transport	1.72E-03
64	GO:0040008: regulation of growth	1.76E-03
65	GO:0006631: fatty acid metabolic process	1.81E-03
66	GO:0009611: response to wounding	1.89E-03
67	GO:0042542: response to hydrogen peroxide	1.91E-03
68	GO:0051707: response to other organism	2.01E-03
69	GO:0016998: cell wall macromolecule catabolic process	2.04E-03
70	GO:0031348: negative regulation of defense response	2.23E-03
71	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	2.30E-03
72	GO:0048830: adventitious root development	2.30E-03
73	GO:1902584: positive regulation of response to water deprivation	2.30E-03
74	GO:0006621: protein retention in ER lumen	2.30E-03
75	GO:1901002: positive regulation of response to salt stress	2.30E-03
76	GO:0033356: UDP-L-arabinose metabolic process	2.30E-03
77	GO:0010188: response to microbial phytotoxin	2.30E-03
78	GO:0015867: ATP transport	2.30E-03
79	GO:0009636: response to toxic substance	2.33E-03
80	GO:0042742: defense response to bacterium	2.34E-03
81	GO:0009693: ethylene biosynthetic process	2.43E-03
82	GO:0045927: positive regulation of growth	2.93E-03
83	GO:0006564: L-serine biosynthetic process	2.93E-03
84	GO:0006097: glyoxylate cycle	2.93E-03
85	GO:0009229: thiamine diphosphate biosynthetic process	2.93E-03
86	GO:0006662: glycerol ether metabolic process	3.34E-03
87	GO:0015866: ADP transport	3.63E-03
88	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	3.63E-03
89	GO:0010256: endomembrane system organization	3.63E-03
90	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.63E-03
91	GO:1900425: negative regulation of defense response to bacterium	3.63E-03
92	GO:0009228: thiamine biosynthetic process	3.63E-03
93	GO:0006014: D-ribose metabolic process	3.63E-03
94	GO:0007275: multicellular organism development	3.68E-03
95	GO:0006623: protein targeting to vacuole	3.85E-03
96	GO:0010193: response to ozone	4.12E-03
97	GO:0030643: cellular phosphate ion homeostasis	4.37E-03
98	GO:0034389: lipid particle organization	4.37E-03
99	GO:0080113: regulation of seed growth	4.37E-03
100	GO:0048444: floral organ morphogenesis	4.37E-03
101	GO:0080186: developmental vegetative growth	5.15E-03
102	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	5.15E-03
103	GO:0071669: plant-type cell wall organization or biogenesis	5.15E-03
104	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	5.15E-03
105	GO:0050829: defense response to Gram-negative bacterium	5.15E-03
106	GO:0010044: response to aluminum ion	5.15E-03
107	GO:0016192: vesicle-mediated transport	5.52E-03
108	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	5.99E-03
109	GO:0043068: positive regulation of programmed cell death	5.99E-03
110	GO:0046686: response to cadmium ion	6.13E-03
111	GO:0010029: regulation of seed germination	6.31E-03
112	GO:0006906: vesicle fusion	6.66E-03
113	GO:0006002: fructose 6-phosphate metabolic process	6.87E-03
114	GO:0010417: glucuronoxylan biosynthetic process	6.87E-03
115	GO:0030968: endoplasmic reticulum unfolded protein response	6.87E-03
116	GO:0017004: cytochrome complex assembly	6.87E-03
117	GO:0006979: response to oxidative stress	7.40E-03
118	GO:0016311: dephosphorylation	7.40E-03
119	GO:0015780: nucleotide-sugar transport	7.79E-03
120	GO:0009835: fruit ripening	7.79E-03
121	GO:0007338: single fertilization	7.79E-03
122	GO:0009817: defense response to fungus, incompatible interaction	7.79E-03
123	GO:0010112: regulation of systemic acquired resistance	7.79E-03
124	GO:0009056: catabolic process	7.79E-03
125	GO:0048527: lateral root development	9.01E-03
126	GO:0009751: response to salicylic acid	9.05E-03
127	GO:0009641: shade avoidance	9.76E-03
128	GO:0016441: posttranscriptional gene silencing	9.76E-03
129	GO:0010629: negative regulation of gene expression	9.76E-03
130	GO:0000103: sulfate assimilation	9.76E-03
131	GO:0006032: chitin catabolic process	9.76E-03
132	GO:0009688: abscisic acid biosynthetic process	9.76E-03
133	GO:0006457: protein folding	1.01E-02
134	GO:0034599: cellular response to oxidative stress	1.03E-02
135	GO:0009684: indoleacetic acid biosynthetic process	1.08E-02
136	GO:0009682: induced systemic resistance	1.08E-02
137	GO:0052544: defense response by callose deposition in cell wall	1.08E-02
138	GO:0006415: translational termination	1.08E-02
139	GO:0000272: polysaccharide catabolic process	1.08E-02
140	GO:0006887: exocytosis	1.18E-02
141	GO:0009737: response to abscisic acid	1.20E-02
142	GO:0009651: response to salt stress	1.28E-02
143	GO:0010114: response to red light	1.28E-02
144	GO:2000012: regulation of auxin polar transport	1.30E-02
145	GO:0010102: lateral root morphogenesis	1.30E-02
146	GO:0002237: response to molecule of bacterial origin	1.42E-02
147	GO:0010053: root epidermal cell differentiation	1.54E-02
148	GO:0090351: seedling development	1.54E-02
149	GO:0034976: response to endoplasmic reticulum stress	1.66E-02
150	GO:0006970: response to osmotic stress	1.77E-02
151	GO:0009863: salicylic acid mediated signaling pathway	1.79E-02
152	GO:0051302: regulation of cell division	1.92E-02
153	GO:0006874: cellular calcium ion homeostasis	1.92E-02
154	GO:0019915: lipid storage	2.05E-02
155	GO:0009269: response to desiccation	2.05E-02
156	GO:0016114: terpenoid biosynthetic process	2.05E-02
157	GO:0009738: abscisic acid-activated signaling pathway	2.09E-02
158	GO:0030245: cellulose catabolic process	2.19E-02
159	GO:0009814: defense response, incompatible interaction	2.19E-02
160	GO:0016226: iron-sulfur cluster assembly	2.19E-02
161	GO:0030433: ubiquitin-dependent ERAD pathway	2.19E-02
162	GO:0006730: one-carbon metabolic process	2.19E-02
163	GO:0009411: response to UV	2.33E-02
164	GO:0045454: cell redox homeostasis	2.65E-02
165	GO:0010118: stomatal movement	2.77E-02
166	GO:0010051: xylem and phloem pattern formation	2.77E-02
167	GO:0045489: pectin biosynthetic process	2.92E-02
168	GO:0006520: cellular amino acid metabolic process	2.92E-02
169	GO:0010182: sugar mediated signaling pathway	2.92E-02
170	GO:0006869: lipid transport	2.97E-02
171	GO:0048544: recognition of pollen	3.07E-02
172	GO:0019252: starch biosynthetic process	3.23E-02
173	GO:0009058: biosynthetic process	3.25E-02
174	GO:0055114: oxidation-reduction process	3.38E-02
175	GO:0071554: cell wall organization or biogenesis	3.39E-02
176	GO:0000302: response to reactive oxygen species	3.39E-02
177	GO:0002229: defense response to oomycetes	3.39E-02
178	GO:0006891: intra-Golgi vesicle-mediated transport	3.39E-02
179	GO:0006635: fatty acid beta-oxidation	3.39E-02
180	GO:0009408: response to heat	3.44E-02
181	GO:0016032: viral process	3.55E-02
182	GO:0071281: cellular response to iron ion	3.72E-02
183	GO:0009567: double fertilization forming a zygote and endosperm	3.88E-02
184	GO:0019760: glucosinolate metabolic process	3.88E-02
185	GO:0006464: cellular protein modification process	3.88E-02
186	GO:0001666: response to hypoxia	4.40E-02
187	GO:0009615: response to virus	4.40E-02
188	GO:0009607: response to biotic stimulus	4.58E-02
189	GO:0009627: systemic acquired resistance	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0033759: flavone synthase activity	0.00E+00
2	GO:0097007: 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity	0.00E+00
3	GO:0055105: ubiquitin-protein transferase inhibitor activity	0.00E+00
4	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
5	GO:0102867: molybdenum cofactor sulfurtransferase activity	0.00E+00
6	GO:0050334: thiaminase activity	0.00E+00
7	GO:0004555: alpha,alpha-trehalase activity	0.00E+00
8	GO:0005046: KDEL sequence binding	0.00E+00
9	GO:0097008: (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity	0.00E+00
10	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
11	GO:0034338: short-chain carboxylesterase activity	0.00E+00
12	GO:0102391: decanoate--CoA ligase activity	2.20E-04
13	GO:0008320: protein transmembrane transporter activity	2.86E-04
14	GO:0004467: long-chain fatty acid-CoA ligase activity	2.86E-04
15	GO:0016229: steroid dehydrogenase activity	3.37E-04
16	GO:0010179: IAA-Ala conjugate hydrolase activity	3.37E-04
17	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.37E-04
18	GO:0015927: trehalase activity	3.37E-04
19	GO:0070401: NADP+ binding	3.37E-04
20	GO:0004348: glucosylceramidase activity	3.37E-04
21	GO:0030942: endoplasmic reticulum signal peptide binding	3.37E-04
22	GO:0009000: selenocysteine lyase activity	3.37E-04
23	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	3.37E-04
24	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	3.37E-04
25	GO:0008142: oxysterol binding	4.41E-04
26	GO:0004630: phospholipase D activity	4.41E-04
27	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	4.41E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	7.34E-04
29	GO:0003994: aconitate hydratase activity	7.34E-04
30	GO:0000774: adenyl-nucleotide exchange factor activity	7.34E-04
31	GO:0032934: sterol binding	7.34E-04
32	GO:0052691: UDP-arabinopyranose mutase activity	7.34E-04
33	GO:0050736: O-malonyltransferase activity	7.34E-04
34	GO:0010331: gibberellin binding	7.34E-04
35	GO:0004478: methionine adenosyltransferase activity	1.19E-03
36	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	1.19E-03
37	GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity	1.19E-03
38	GO:0008061: chitin binding	1.36E-03
39	GO:0030170: pyridoxal phosphate binding	1.36E-03
40	GO:0031418: L-ascorbic acid binding	1.68E-03
41	GO:0001046: core promoter sequence-specific DNA binding	1.68E-03
42	GO:0035529: NADH pyrophosphatase activity	1.71E-03
43	GO:0016149: translation release factor activity, codon specific	1.71E-03
44	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.71E-03
45	GO:0005460: UDP-glucose transmembrane transporter activity	1.71E-03
46	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.71E-03
47	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.71E-03
48	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.71E-03
49	GO:0042803: protein homodimerization activity	1.76E-03
50	GO:0004834: tryptophan synthase activity	2.30E-03
51	GO:0046923: ER retention sequence binding	2.30E-03
52	GO:0016866: intramolecular transferase activity	2.30E-03
53	GO:0008810: cellulase activity	2.43E-03
54	GO:0047134: protein-disulfide reductase activity	2.87E-03
55	GO:0030151: molybdenum ion binding	2.93E-03
56	GO:0005459: UDP-galactose transmembrane transporter activity	2.93E-03
57	GO:0005546: phosphatidylinositol-4,5-bisphosphate binding	2.93E-03
58	GO:0004623: phospholipase A2 activity	2.93E-03
59	GO:0018685: alkane 1-monooxygenase activity	2.93E-03
60	GO:0047631: ADP-ribose diphosphatase activity	2.93E-03
61	GO:0004791: thioredoxin-disulfide reductase activity	3.59E-03
62	GO:0000210: NAD+ diphosphatase activity	3.63E-03
63	GO:0015217: ADP transmembrane transporter activity	4.37E-03
64	GO:0004747: ribokinase activity	4.37E-03
65	GO:0005347: ATP transmembrane transporter activity	4.37E-03
66	GO:0004656: procollagen-proline 4-dioxygenase activity	4.37E-03
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.69E-03
68	GO:0015035: protein disulfide oxidoreductase activity	4.77E-03
69	GO:0003872: 6-phosphofructokinase activity	5.15E-03
70	GO:0008483: transaminase activity	5.31E-03
71	GO:0008312: 7S RNA binding	5.99E-03
72	GO:0052747: sinapyl alcohol dehydrogenase activity	5.99E-03
73	GO:0004033: aldo-keto reductase (NADP) activity	5.99E-03
74	GO:0008865: fructokinase activity	5.99E-03
75	GO:0004806: triglyceride lipase activity	7.03E-03
76	GO:0030247: polysaccharide binding	7.03E-03
77	GO:0005506: iron ion binding	7.06E-03
78	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	7.79E-03
79	GO:0003747: translation release factor activity	7.79E-03
80	GO:0004568: chitinase activity	9.76E-03
81	GO:0004864: protein phosphatase inhibitor activity	9.76E-03
82	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	9.89E-03
83	GO:0003993: acid phosphatase activity	1.03E-02
84	GO:0000149: SNARE binding	1.08E-02
85	GO:0051539: 4 iron, 4 sulfur cluster binding	1.13E-02
86	GO:0045551: cinnamyl-alcohol dehydrogenase activity	1.19E-02
87	GO:0019825: oxygen binding	1.19E-02
88	GO:0005484: SNAP receptor activity	1.28E-02
89	GO:0031072: heat shock protein binding	1.30E-02
90	GO:0005198: structural molecule activity	1.44E-02
91	GO:0003712: transcription cofactor activity	1.54E-02
92	GO:0004970: ionotropic glutamate receptor activity	1.54E-02
93	GO:0005217: intracellular ligand-gated ion channel activity	1.54E-02
94	GO:0051287: NAD binding	1.55E-02
95	GO:0020037: heme binding	1.76E-02
96	GO:0051536: iron-sulfur cluster binding	1.79E-02
97	GO:0046872: metal ion binding	1.91E-02
98	GO:0051087: chaperone binding	1.92E-02
99	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.19E-02
100	GO:0051082: unfolded protein binding	2.46E-02
101	GO:0003756: protein disulfide isomerase activity	2.47E-02
102	GO:0005102: receptor binding	2.62E-02
103	GO:0005524: ATP binding	2.85E-02
104	GO:0004722: protein serine/threonine phosphatase activity	2.97E-02
105	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.16E-02
106	GO:0004872: receptor activity	3.23E-02
107	GO:0043565: sequence-specific DNA binding	3.28E-02
108	GO:0005507: copper ion binding	3.68E-02
109	GO:0016791: phosphatase activity	3.88E-02
110	GO:0015297: antiporter activity	4.05E-02
111	GO:0008237: metallopeptidase activity	4.05E-02
112	GO:0016413: O-acetyltransferase activity	4.23E-02
113	GO:0016597: amino acid binding	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0005789: endoplasmic reticulum membrane	2.61E-07
2	GO:0005794: Golgi apparatus	1.34E-05
3	GO:0005783: endoplasmic reticulum	1.68E-05
4	GO:0016021: integral component of membrane	2.06E-05
5	GO:0017119: Golgi transport complex	3.65E-05
6	GO:0005801: cis-Golgi network	2.20E-04
7	GO:0045252: oxoglutarate dehydrogenase complex	3.37E-04
8	GO:0001405: presequence translocase-associated import motor	3.37E-04
9	GO:0030134: ER to Golgi transport vesicle	7.34E-04
10	GO:0005886: plasma membrane	8.92E-04
11	GO:0005829: cytosol	1.10E-03
12	GO:0030658: transport vesicle membrane	1.71E-03
13	GO:0005945: 6-phosphofructokinase complex	2.93E-03
14	GO:0000164: protein phosphatase type 1 complex	2.93E-03
15	GO:0009506: plasmodesma	4.29E-03
16	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	5.15E-03
17	GO:0009986: cell surface	5.15E-03
18	GO:0005774: vacuolar membrane	5.52E-03
19	GO:0005788: endoplasmic reticulum lumen	6.31E-03
20	GO:0005623: cell	6.33E-03
21	GO:0005779: integral component of peroxisomal membrane	6.87E-03
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.87E-03
23	GO:0005811: lipid particle	6.87E-03
24	GO:0031901: early endosome membrane	7.79E-03
25	GO:0005743: mitochondrial inner membrane	8.28E-03
26	GO:0030665: clathrin-coated vesicle membrane	8.75E-03
27	GO:0031201: SNARE complex	1.18E-02
28	GO:0031902: late endosome membrane	1.18E-02
29	GO:0046658: anchored component of plasma membrane	1.32E-02
30	GO:0030176: integral component of endoplasmic reticulum membrane	1.54E-02
31	GO:0005737: cytoplasm	1.79E-02
32	GO:0005768: endosome	1.82E-02
33	GO:0005681: spliceosomal complex	2.04E-02
34	GO:0031410: cytoplasmic vesicle	2.19E-02
35	GO:0016020: membrane	2.41E-02
36	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.47E-02
37	GO:0019898: extrinsic component of membrane	3.23E-02
38	GO:0009504: cell plate	3.23E-02
39	GO:0031965: nuclear membrane	3.23E-02
40	GO:0071944: cell periphery	3.72E-02
41	GO:0032580: Golgi cisterna membrane	3.88E-02
42	GO:0031225: anchored component of membrane	4.20E-02
43	GO:0005802: trans-Golgi network	4.36E-02