co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G52190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
5	GO:0019323: pentose catabolic process	0.00E+00
6	GO:0090706: specification of plant organ position	0.00E+00
7	GO:0009733: response to auxin	7.21E-07
8	GO:0046620: regulation of organ growth	3.56E-06
9	GO:0016123: xanthophyll biosynthetic process	5.47E-05
10	GO:0040008: regulation of growth	9.58E-05
11	GO:0009926: auxin polar transport	1.01E-04
12	GO:0070509: calcium ion import	2.18E-04
13	GO:0044262: cellular carbohydrate metabolic process	2.18E-04
14	GO:0043266: regulation of potassium ion transport	2.18E-04
15	GO:0010080: regulation of floral meristem growth	2.18E-04
16	GO:2000021: regulation of ion homeostasis	2.18E-04
17	GO:0051247: positive regulation of protein metabolic process	2.18E-04
18	GO:1902458: positive regulation of stomatal opening	2.18E-04
19	GO:2000905: negative regulation of starch metabolic process	2.18E-04
20	GO:0010450: inflorescence meristem growth	2.18E-04
21	GO:0009734: auxin-activated signaling pathway	3.15E-04
22	GO:1900865: chloroplast RNA modification	3.36E-04
23	GO:0048829: root cap development	3.94E-04
24	GO:1900871: chloroplast mRNA modification	4.86E-04
25	GO:0001736: establishment of planar polarity	4.86E-04
26	GO:0009786: regulation of asymmetric cell division	4.86E-04
27	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.86E-04
28	GO:2000123: positive regulation of stomatal complex development	4.86E-04
29	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.86E-04
30	GO:0048255: mRNA stabilization	4.86E-04
31	GO:0006094: gluconeogenesis	5.92E-04
32	GO:0070588: calcium ion transmembrane transport	7.45E-04
33	GO:0010022: meristem determinacy	7.90E-04
34	GO:0048586: regulation of long-day photoperiodism, flowering	7.90E-04
35	GO:0010623: programmed cell death involved in cell development	7.90E-04
36	GO:0006696: ergosterol biosynthetic process	7.90E-04
37	GO:0045165: cell fate commitment	7.90E-04
38	GO:1902448: positive regulation of shade avoidance	7.90E-04
39	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.13E-03
40	GO:1990019: protein storage vacuole organization	1.13E-03
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.13E-03
42	GO:0051513: regulation of monopolar cell growth	1.13E-03
43	GO:0007231: osmosensory signaling pathway	1.13E-03
44	GO:0051639: actin filament network formation	1.13E-03
45	GO:0034059: response to anoxia	1.13E-03
46	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.31E-03
47	GO:0010508: positive regulation of autophagy	1.50E-03
48	GO:0008295: spermidine biosynthetic process	1.50E-03
49	GO:0033500: carbohydrate homeostasis	1.50E-03
50	GO:2000038: regulation of stomatal complex development	1.50E-03
51	GO:0051764: actin crosslink formation	1.50E-03
52	GO:0009765: photosynthesis, light harvesting	1.50E-03
53	GO:2000306: positive regulation of photomorphogenesis	1.50E-03
54	GO:0016117: carotenoid biosynthetic process	1.54E-03
55	GO:0016120: carotene biosynthetic process	1.91E-03
56	GO:0000304: response to singlet oxygen	1.91E-03
57	GO:0080110: sporopollenin biosynthetic process	1.91E-03
58	GO:0045038: protein import into chloroplast thylakoid membrane	1.91E-03
59	GO:1902183: regulation of shoot apical meristem development	1.91E-03
60	GO:0010158: abaxial cell fate specification	1.91E-03
61	GO:0010375: stomatal complex patterning	1.91E-03
62	GO:0016554: cytidine to uridine editing	2.35E-03
63	GO:0009828: plant-type cell wall loosening	2.66E-03
64	GO:0007267: cell-cell signaling	2.82E-03
65	GO:0030488: tRNA methylation	2.83E-03
66	GO:0015693: magnesium ion transport	3.33E-03
67	GO:0048528: post-embryonic root development	3.33E-03
68	GO:2000070: regulation of response to water deprivation	3.86E-03
69	GO:0000105: histidine biosynthetic process	3.86E-03
70	GO:0010311: lateral root formation	4.33E-03
71	GO:0007186: G-protein coupled receptor signaling pathway	4.42E-03
72	GO:0009657: plastid organization	4.42E-03
73	GO:0010093: specification of floral organ identity	4.42E-03
74	GO:0015996: chlorophyll catabolic process	4.42E-03
75	GO:2000024: regulation of leaf development	5.00E-03
76	GO:0000373: Group II intron splicing	5.00E-03
77	GO:0009051: pentose-phosphate shunt, oxidative branch	5.00E-03
78	GO:0006098: pentose-phosphate shunt	5.00E-03
79	GO:0042761: very long-chain fatty acid biosynthetic process	5.62E-03
80	GO:0009638: phototropism	5.62E-03
81	GO:0009299: mRNA transcription	6.25E-03
82	GO:0006535: cysteine biosynthetic process from serine	6.25E-03
83	GO:0009641: shade avoidance	6.25E-03
84	GO:0006949: syncytium formation	6.25E-03
85	GO:0009826: unidimensional cell growth	6.81E-03
86	GO:0006415: translational termination	6.91E-03
87	GO:0048765: root hair cell differentiation	6.91E-03
88	GO:0006816: calcium ion transport	6.91E-03
89	GO:0045037: protein import into chloroplast stroma	7.60E-03
90	GO:0010582: floral meristem determinacy	7.60E-03
91	GO:0009785: blue light signaling pathway	8.30E-03
92	GO:0009725: response to hormone	8.30E-03
93	GO:0009664: plant-type cell wall organization	8.45E-03
94	GO:0009933: meristem structural organization	9.03E-03
95	GO:0010207: photosystem II assembly	9.03E-03
96	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.82E-03
97	GO:0010025: wax biosynthetic process	1.06E-02
98	GO:0048316: seed development	1.11E-02
99	GO:0009944: polarity specification of adaxial/abaxial axis	1.14E-02
100	GO:0051017: actin filament bundle assembly	1.14E-02
101	GO:0019344: cysteine biosynthetic process	1.14E-02
102	GO:0009740: gibberellic acid mediated signaling pathway	1.22E-02
103	GO:0009624: response to nematode	1.30E-02
104	GO:0031408: oxylipin biosynthetic process	1.30E-02
105	GO:0003333: amino acid transmembrane transport	1.30E-02
106	GO:0048511: rhythmic process	1.30E-02
107	GO:0009742: brassinosteroid mediated signaling pathway	1.37E-02
108	GO:0010082: regulation of root meristem growth	1.48E-02
109	GO:0009294: DNA mediated transformation	1.48E-02
110	GO:0005975: carbohydrate metabolic process	1.49E-02
111	GO:0006284: base-excision repair	1.57E-02
112	GO:0019722: calcium-mediated signaling	1.57E-02
113	GO:0010089: xylem development	1.57E-02
114	GO:0010584: pollen exine formation	1.57E-02
115	GO:0000413: protein peptidyl-prolyl isomerization	1.75E-02
116	GO:0010154: fruit development	1.85E-02
117	GO:0009958: positive gravitropism	1.85E-02
118	GO:0010182: sugar mediated signaling pathway	1.85E-02
119	GO:0007018: microtubule-based movement	1.95E-02
120	GO:0042752: regulation of circadian rhythm	1.95E-02
121	GO:0071554: cell wall organization or biogenesis	2.15E-02
122	GO:0016032: viral process	2.25E-02
123	GO:0045490: pectin catabolic process	2.25E-02
124	GO:0032502: developmental process	2.25E-02
125	GO:0007275: multicellular organism development	2.31E-02
126	GO:0071555: cell wall organization	2.41E-02
127	GO:0006464: cellular protein modification process	2.46E-02
128	GO:0007165: signal transduction	2.54E-02
129	GO:0007166: cell surface receptor signaling pathway	2.57E-02
130	GO:0051607: defense response to virus	2.68E-02
131	GO:0009911: positive regulation of flower development	2.79E-02
132	GO:0001666: response to hypoxia	2.79E-02
133	GO:0010027: thylakoid membrane organization	2.79E-02
134	GO:0009735: response to cytokinin	2.84E-02
135	GO:0010029: regulation of seed germination	2.91E-02
136	GO:0009793: embryo development ending in seed dormancy	3.03E-02
137	GO:0015995: chlorophyll biosynthetic process	3.14E-02
138	GO:0009817: defense response to fungus, incompatible interaction	3.37E-02
139	GO:0018298: protein-chromophore linkage	3.37E-02
140	GO:0009407: toxin catabolic process	3.62E-02
141	GO:0006865: amino acid transport	3.86E-02
142	GO:0080167: response to karrikin	4.30E-02
143	GO:0006839: mitochondrial transport	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0001872: (1->3)-beta-D-glucan binding	1.87E-05
5	GO:0051996: squalene synthase activity	2.18E-04
6	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	2.18E-04
7	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.18E-04
8	GO:0003879: ATP phosphoribosyltransferase activity	2.18E-04
9	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.18E-04
10	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.18E-04
11	GO:0005227: calcium activated cation channel activity	2.18E-04
12	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.86E-04
13	GO:0050017: L-3-cyanoalanine synthase activity	4.86E-04
14	GO:0017118: lipoyltransferase activity	4.86E-04
15	GO:0043425: bHLH transcription factor binding	4.86E-04
16	GO:0004766: spermidine synthase activity	4.86E-04
17	GO:0004750: ribulose-phosphate 3-epimerase activity	4.86E-04
18	GO:0005262: calcium channel activity	5.92E-04
19	GO:0003913: DNA photolyase activity	7.90E-04
20	GO:0004557: alpha-galactosidase activity	7.90E-04
21	GO:0052692: raffinose alpha-galactosidase activity	7.90E-04
22	GO:0016149: translation release factor activity, codon specific	1.13E-03
23	GO:0017057: 6-phosphogluconolactonase activity	1.13E-03
24	GO:0030570: pectate lyase activity	1.31E-03
25	GO:0019199: transmembrane receptor protein kinase activity	1.50E-03
26	GO:0010011: auxin binding	1.50E-03
27	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.50E-03
28	GO:0010328: auxin influx transmembrane transporter activity	1.50E-03
29	GO:0008725: DNA-3-methyladenine glycosylase activity	1.91E-03
30	GO:0004332: fructose-bisphosphate aldolase activity	2.35E-03
31	GO:0051753: mannan synthase activity	2.83E-03
32	GO:0004124: cysteine synthase activity	2.83E-03
33	GO:0009881: photoreceptor activity	3.33E-03
34	GO:0030247: polysaccharide binding	3.72E-03
35	GO:0003747: translation release factor activity	5.00E-03
36	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.86E-03
37	GO:0004565: beta-galactosidase activity	8.30E-03
38	GO:0015095: magnesium ion transmembrane transporter activity	8.30E-03
39	GO:0031072: heat shock protein binding	8.30E-03
40	GO:0008146: sulfotransferase activity	9.79E-03
41	GO:0051536: iron-sulfur cluster binding	1.14E-02
42	GO:0005528: FK506 binding	1.14E-02
43	GO:0046983: protein dimerization activity	1.19E-02
44	GO:0043424: protein histidine kinase binding	1.22E-02
45	GO:0004871: signal transducer activity	1.25E-02
46	GO:0003756: protein disulfide isomerase activity	1.57E-02
47	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.57E-02
48	GO:0016829: lyase activity	1.76E-02
49	GO:0010181: FMN binding	1.95E-02
50	GO:0050662: coenzyme binding	1.95E-02
51	GO:0016853: isomerase activity	1.95E-02
52	GO:0019901: protein kinase binding	2.05E-02
53	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.09E-02
54	GO:0004518: nuclease activity	2.25E-02
55	GO:0051015: actin filament binding	2.36E-02
56	GO:0016413: O-acetyltransferase activity	2.68E-02
57	GO:0005096: GTPase activator activity	3.49E-02
58	GO:0003746: translation elongation factor activity	3.99E-02
59	GO:0050661: NADP binding	4.38E-02
60	GO:0004674: protein serine/threonine kinase activity	4.40E-02
61	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.46E-02
62	GO:0004364: glutathione transferase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.90E-08
2	GO:0009986: cell surface	1.47E-04
3	GO:0005886: plasma membrane	1.88E-04
4	GO:0009508: plastid chromosome	5.92E-04
5	GO:0009534: chloroplast thylakoid	7.44E-04
6	GO:0030139: endocytic vesicle	7.90E-04
7	GO:0009528: plastid inner membrane	7.90E-04
8	GO:0009570: chloroplast stroma	7.92E-04
9	GO:0009535: chloroplast thylakoid membrane	1.08E-03
10	GO:0032585: multivesicular body membrane	1.13E-03
11	GO:0032432: actin filament bundle	1.13E-03
12	GO:0009527: plastid outer membrane	1.50E-03
13	GO:0031969: chloroplast membrane	1.93E-03
14	GO:0009941: chloroplast envelope	2.31E-03
15	GO:0009543: chloroplast thylakoid lumen	2.73E-03
16	GO:0009295: nucleoid	2.82E-03
17	GO:0010319: stromule	2.82E-03
18	GO:0009533: chloroplast stromal thylakoid	3.33E-03
19	GO:0031977: thylakoid lumen	6.20E-03
20	GO:0005884: actin filament	6.91E-03
21	GO:0000311: plastid large ribosomal subunit	7.60E-03
22	GO:0005578: proteinaceous extracellular matrix	8.30E-03
23	GO:0030095: chloroplast photosystem II	9.03E-03
24	GO:0043234: protein complex	1.06E-02
25	GO:0009579: thylakoid	1.10E-02
26	GO:0009654: photosystem II oxygen evolving complex	1.22E-02
27	GO:0009532: plastid stroma	1.30E-02
28	GO:0031225: anchored component of membrane	1.64E-02
29	GO:0005871: kinesin complex	1.66E-02
30	GO:0019898: extrinsic component of membrane	2.05E-02
31	GO:0046658: anchored component of plasma membrane	2.97E-02
32	GO:0009505: plant-type cell wall	3.36E-02
33	GO:0009707: chloroplast outer membrane	3.37E-02
34	GO:0015934: large ribosomal subunit	3.74E-02
35	GO:0005874: microtubule	4.15E-02