co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G51430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0043972: histone H3-K23 acetylation	0.00E+00
5	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
6	GO:0046486: glycerolipid metabolic process	0.00E+00
7	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
8	GO:0019685: photosynthesis, dark reaction	0.00E+00
9	GO:0044154: histone H3-K14 acetylation	0.00E+00
10	GO:0009451: RNA modification	2.48E-04
11	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.87E-04
12	GO:0043971: histone H3-K18 acetylation	2.87E-04
13	GO:0010480: microsporocyte differentiation	2.87E-04
14	GO:0043609: regulation of carbon utilization	2.87E-04
15	GO:0034757: negative regulation of iron ion transport	2.87E-04
16	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.87E-04
17	GO:0051171: regulation of nitrogen compound metabolic process	2.87E-04
18	GO:0006002: fructose 6-phosphate metabolic process	3.49E-04
19	GO:0080175: phragmoplast microtubule organization	6.30E-04
20	GO:0006650: glycerophospholipid metabolic process	6.30E-04
21	GO:0080005: photosystem stoichiometry adjustment	6.30E-04
22	GO:0010271: regulation of chlorophyll catabolic process	6.30E-04
23	GO:0001736: establishment of planar polarity	6.30E-04
24	GO:0043039: tRNA aminoacylation	6.30E-04
25	GO:0010540: basipetal auxin transport	9.74E-04
26	GO:0009934: regulation of meristem structural organization	9.74E-04
27	GO:0006000: fructose metabolic process	1.02E-03
28	GO:0046168: glycerol-3-phosphate catabolic process	1.02E-03
29	GO:0006013: mannose metabolic process	1.02E-03
30	GO:0080117: secondary growth	1.02E-03
31	GO:0042780: tRNA 3'-end processing	1.02E-03
32	GO:0045493: xylan catabolic process	1.02E-03
33	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.02E-03
34	GO:0009793: embryo development ending in seed dormancy	1.06E-03
35	GO:0080188: RNA-directed DNA methylation	1.09E-03
36	GO:0006072: glycerol-3-phosphate metabolic process	1.46E-03
37	GO:0009800: cinnamic acid biosynthetic process	1.46E-03
38	GO:0010255: glucose mediated signaling pathway	1.46E-03
39	GO:2001141: regulation of RNA biosynthetic process	1.46E-03
40	GO:0045017: glycerolipid biosynthetic process	1.46E-03
41	GO:0009926: auxin polar transport	1.49E-03
42	GO:0006021: inositol biosynthetic process	1.96E-03
43	GO:0009956: radial pattern formation	1.96E-03
44	GO:0000271: polysaccharide biosynthetic process	2.45E-03
45	GO:0048653: anther development	2.45E-03
46	GO:0051225: spindle assembly	2.50E-03
47	GO:0045489: pectin biosynthetic process	2.64E-03
48	GO:0006559: L-phenylalanine catabolic process	3.08E-03
49	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	3.08E-03
50	GO:0048831: regulation of shoot system development	3.08E-03
51	GO:0048827: phyllome development	3.08E-03
52	GO:0009740: gibberellic acid mediated signaling pathway	3.15E-03
53	GO:0002229: defense response to oomycetes	3.26E-03
54	GO:0010583: response to cyclopentenone	3.48E-03
55	GO:0080167: response to karrikin	3.56E-03
56	GO:0009942: longitudinal axis specification	3.71E-03
57	GO:0048509: regulation of meristem development	3.71E-03
58	GO:0048444: floral organ morphogenesis	3.71E-03
59	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.71E-03
60	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.75E-03
61	GO:0009416: response to light stimulus	4.24E-03
62	GO:0048437: floral organ development	4.38E-03
63	GO:0006401: RNA catabolic process	4.38E-03
64	GO:0009610: response to symbiotic fungus	4.38E-03
65	GO:0006353: DNA-templated transcription, termination	5.08E-03
66	GO:0000105: histidine biosynthetic process	5.08E-03
67	GO:0010411: xyloglucan metabolic process	5.54E-03
68	GO:0010052: guard cell differentiation	5.82E-03
69	GO:0032544: plastid translation	5.82E-03
70	GO:0007389: pattern specification process	5.82E-03
71	GO:0044030: regulation of DNA methylation	5.82E-03
72	GO:0009932: cell tip growth	5.82E-03
73	GO:0071482: cellular response to light stimulus	5.82E-03
74	GO:0000160: phosphorelay signal transduction system	6.45E-03
75	GO:0046916: cellular transition metal ion homeostasis	6.60E-03
76	GO:0048589: developmental growth	6.60E-03
77	GO:0010380: regulation of chlorophyll biosynthetic process	7.41E-03
78	GO:0008202: steroid metabolic process	7.41E-03
79	GO:0016051: carbohydrate biosynthetic process	7.78E-03
80	GO:0006782: protoporphyrinogen IX biosynthetic process	8.26E-03
81	GO:0006535: cysteine biosynthetic process from serine	8.26E-03
82	GO:0048829: root cap development	8.26E-03
83	GO:0010192: mucilage biosynthetic process	8.26E-03
84	GO:0030001: metal ion transport	8.87E-03
85	GO:0009089: lysine biosynthetic process via diaminopimelate	9.14E-03
86	GO:0006352: DNA-templated transcription, initiation	9.14E-03
87	GO:0009750: response to fructose	9.14E-03
88	GO:0016485: protein processing	9.14E-03
89	GO:0048229: gametophyte development	9.14E-03
90	GO:0048765: root hair cell differentiation	9.14E-03
91	GO:0045037: protein import into chloroplast stroma	1.01E-02
92	GO:0010152: pollen maturation	1.01E-02
93	GO:0006790: sulfur compound metabolic process	1.01E-02
94	GO:0010229: inflorescence development	1.10E-02
95	GO:0009718: anthocyanin-containing compound biosynthetic process	1.10E-02
96	GO:0010075: regulation of meristem growth	1.10E-02
97	GO:0009658: chloroplast organization	1.19E-02
98	GO:0009933: meristem structural organization	1.20E-02
99	GO:0009825: multidimensional cell growth	1.30E-02
100	GO:0046854: phosphatidylinositol phosphorylation	1.30E-02
101	GO:0010053: root epidermal cell differentiation	1.30E-02
102	GO:0006364: rRNA processing	1.36E-02
103	GO:0009736: cytokinin-activated signaling pathway	1.36E-02
104	GO:0009833: plant-type primary cell wall biogenesis	1.40E-02
105	GO:0071555: cell wall organization	1.45E-02
106	GO:0010187: negative regulation of seed germination	1.51E-02
107	GO:0080147: root hair cell development	1.51E-02
108	GO:0006289: nucleotide-excision repair	1.51E-02
109	GO:0019344: cysteine biosynthetic process	1.51E-02
110	GO:0006418: tRNA aminoacylation for protein translation	1.62E-02
111	GO:0010073: meristem maintenance	1.62E-02
112	GO:0051302: regulation of cell division	1.62E-02
113	GO:0006306: DNA methylation	1.73E-02
114	GO:0003333: amino acid transmembrane transport	1.73E-02
115	GO:0016226: iron-sulfur cluster assembly	1.85E-02
116	GO:0009624: response to nematode	1.94E-02
117	GO:0071215: cellular response to abscisic acid stimulus	1.96E-02
118	GO:0009686: gibberellin biosynthetic process	1.96E-02
119	GO:0048443: stamen development	2.08E-02
120	GO:0006284: base-excision repair	2.08E-02
121	GO:0070417: cellular response to cold	2.21E-02
122	GO:0010087: phloem or xylem histogenesis	2.33E-02
123	GO:0009958: positive gravitropism	2.46E-02
124	GO:0010305: leaf vascular tissue pattern formation	2.46E-02
125	GO:0048868: pollen tube development	2.46E-02
126	GO:0048825: cotyledon development	2.72E-02
127	GO:0009749: response to glucose	2.72E-02
128	GO:0008654: phospholipid biosynthetic process	2.72E-02
129	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.86E-02
130	GO:0031047: gene silencing by RNA	3.00E-02
131	GO:0006633: fatty acid biosynthetic process	3.05E-02
132	GO:0010252: auxin homeostasis	3.28E-02
133	GO:0009639: response to red or far red light	3.28E-02
134	GO:0045490: pectin catabolic process	3.35E-02
135	GO:0009911: positive regulation of flower development	3.72E-02
136	GO:0009739: response to gibberellin	3.74E-02
137	GO:0016567: protein ubiquitination	3.82E-02
138	GO:0010029: regulation of seed germination	3.86E-02
139	GO:0009734: auxin-activated signaling pathway	3.91E-02
140	GO:0010468: regulation of gene expression	3.99E-02
141	GO:0009627: systemic acquired resistance	4.02E-02
142	GO:0015995: chlorophyll biosynthetic process	4.17E-02
143	GO:0030244: cellulose biosynthetic process	4.49E-02
144	GO:0010311: lateral root formation	4.65E-02
145	GO:0009832: plant-type cell wall biogenesis	4.65E-02
146	GO:0006499: N-terminal protein myristoylation	4.81E-02
147	GO:0007568: aging	4.97E-02
148	GO:0009910: negative regulation of flower development	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
8	GO:0008859: exoribonuclease II activity	0.00E+00
9	GO:0010011: auxin binding	5.45E-05
10	GO:0004831: tyrosine-tRNA ligase activity	2.87E-04
11	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.87E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.87E-04
13	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.87E-04
14	GO:0008836: diaminopimelate decarboxylase activity	2.87E-04
15	GO:0004109: coproporphyrinogen oxidase activity	6.30E-04
16	GO:0008805: carbon-monoxide oxygenase activity	6.30E-04
17	GO:0008934: inositol monophosphate 1-phosphatase activity	6.30E-04
18	GO:0052833: inositol monophosphate 4-phosphatase activity	6.30E-04
19	GO:0009884: cytokinin receptor activity	6.30E-04
20	GO:0050017: L-3-cyanoalanine synthase activity	6.30E-04
21	GO:0005094: Rho GDP-dissociation inhibitor activity	6.30E-04
22	GO:0004047: aminomethyltransferase activity	6.30E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	6.30E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.30E-04
25	GO:0045548: phenylalanine ammonia-lyase activity	1.02E-03
26	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.02E-03
27	GO:0016805: dipeptidase activity	1.02E-03
28	GO:0005034: osmosensor activity	1.02E-03
29	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.02E-03
30	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.02E-03
31	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	1.02E-03
32	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.77E-03
33	GO:0030570: pectate lyase activity	1.93E-03
34	GO:0016987: sigma factor activity	1.96E-03
35	GO:0010328: auxin influx transmembrane transporter activity	1.96E-03
36	GO:0010385: double-stranded methylated DNA binding	1.96E-03
37	GO:0070628: proteasome binding	1.96E-03
38	GO:0009044: xylan 1,4-beta-xylosidase activity	1.96E-03
39	GO:0046556: alpha-L-arabinofuranosidase activity	1.96E-03
40	GO:0001053: plastid sigma factor activity	1.96E-03
41	GO:0005471: ATP:ADP antiporter activity	2.50E-03
42	GO:0008725: DNA-3-methyladenine glycosylase activity	2.50E-03
43	GO:0031593: polyubiquitin binding	3.08E-03
44	GO:0004462: lactoylglutathione lyase activity	3.08E-03
45	GO:2001070: starch binding	3.08E-03
46	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.71E-03
47	GO:0019900: kinase binding	3.71E-03
48	GO:0004559: alpha-mannosidase activity	3.71E-03
49	GO:0004124: cysteine synthase activity	3.71E-03
50	GO:0008237: metallopeptidase activity	4.19E-03
51	GO:0016758: transferase activity, transferring hexosyl groups	4.37E-03
52	GO:0003872: 6-phosphofructokinase activity	4.38E-03
53	GO:0019899: enzyme binding	4.38E-03
54	GO:0046914: transition metal ion binding	5.82E-03
55	GO:0008142: oxysterol binding	5.82E-03
56	GO:0004519: endonuclease activity	7.31E-03
57	GO:0009672: auxin:proton symporter activity	7.41E-03
58	GO:0046872: metal ion binding	7.88E-03
59	GO:0004673: protein histidine kinase activity	8.26E-03
60	GO:0015020: glucuronosyltransferase activity	8.26E-03
61	GO:0008327: methyl-CpG binding	9.14E-03
62	GO:0043621: protein self-association	1.09E-02
63	GO:0000175: 3'-5'-exoribonuclease activity	1.10E-02
64	GO:0010329: auxin efflux transmembrane transporter activity	1.10E-02
65	GO:0000155: phosphorelay sensor kinase activity	1.10E-02
66	GO:0009982: pseudouridine synthase activity	1.10E-02
67	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.40E-02
68	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.40E-02
69	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.40E-02
70	GO:0008134: transcription factor binding	1.51E-02
71	GO:0004857: enzyme inhibitor activity	1.51E-02
72	GO:0043130: ubiquitin binding	1.51E-02
73	GO:0043424: protein histidine kinase binding	1.62E-02
74	GO:0004540: ribonuclease activity	1.73E-02
75	GO:0033612: receptor serine/threonine kinase binding	1.73E-02
76	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.77E-02
77	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.77E-02
78	GO:0016760: cellulose synthase (UDP-forming) activity	1.96E-02
79	GO:0004871: signal transducer activity	2.08E-02
80	GO:0004812: aminoacyl-tRNA ligase activity	2.21E-02
81	GO:0003723: RNA binding	2.26E-02
82	GO:0004402: histone acetyltransferase activity	2.33E-02
83	GO:0019843: rRNA binding	2.43E-02
84	GO:0001085: RNA polymerase II transcription factor binding	2.46E-02
85	GO:0016829: lyase activity	2.63E-02
86	GO:0019901: protein kinase binding	2.72E-02
87	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.86E-02
88	GO:0000156: phosphorelay response regulator activity	3.13E-02
89	GO:0003684: damaged DNA binding	3.28E-02
90	GO:0016759: cellulose synthase activity	3.28E-02
91	GO:0016301: kinase activity	3.58E-02
92	GO:0008194: UDP-glycosyltransferase activity	3.74E-02
93	GO:0004674: protein serine/threonine kinase activity	4.08E-02
94	GO:0004806: triglyceride lipase activity	4.17E-02
95	GO:0004721: phosphoprotein phosphatase activity	4.17E-02
96	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.17E-02
97	GO:0042802: identical protein binding	4.25E-02
98	GO:0005096: GTPase activator activity	4.65E-02
99	GO:0004222: metalloendopeptidase activity	4.81E-02
100	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.81E-02
101	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0010370: perinucleolar chromocenter	2.87E-04
3	GO:0009507: chloroplast	5.78E-04
4	GO:0070652: HAUS complex	1.02E-03
5	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.46E-03
6	GO:0005945: 6-phosphofructokinase complex	2.50E-03
7	GO:0000178: exosome (RNase complex)	2.50E-03
8	GO:0009986: cell surface	4.38E-03
9	GO:0005720: nuclear heterochromatin	6.60E-03
10	GO:0005819: spindle	8.50E-03
11	GO:0016602: CCAAT-binding factor complex	1.10E-02
12	GO:0000419: DNA-directed RNA polymerase V complex	1.40E-02
13	GO:0009570: chloroplast stroma	1.48E-02
14	GO:0009536: plastid	2.05E-02
15	GO:0005770: late endosome	2.46E-02
16	GO:0043231: intracellular membrane-bounded organelle	2.89E-02
17	GO:0010319: stromule	3.42E-02
18	GO:0000932: P-body	3.72E-02
19	GO:0005667: transcription factor complex	4.02E-02
20	GO:0009707: chloroplast outer membrane	4.49E-02
21	GO:0005886: plasma membrane	4.80E-02