Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G50900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
8GO:0015979: photosynthesis3.15E-12
9GO:0009773: photosynthetic electron transport in photosystem I2.80E-10
10GO:0015995: chlorophyll biosynthetic process5.01E-07
11GO:0010207: photosystem II assembly4.09E-06
12GO:0032544: plastid translation2.08E-05
13GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.04E-05
14GO:0071484: cellular response to light intensity5.04E-05
15GO:0010190: cytochrome b6f complex assembly1.99E-04
16GO:0009768: photosynthesis, light harvesting in photosystem I2.12E-04
17GO:1901259: chloroplast rRNA processing2.69E-04
18GO:0000476: maturation of 4.5S rRNA3.84E-04
19GO:0000967: rRNA 5'-end processing3.84E-04
20GO:0046467: membrane lipid biosynthetic process3.84E-04
21GO:0015671: oxygen transport3.84E-04
22GO:1904966: positive regulation of vitamin E biosynthetic process3.84E-04
23GO:0019544: arginine catabolic process to glutamate3.84E-04
24GO:0071277: cellular response to calcium ion3.84E-04
25GO:1904964: positive regulation of phytol biosynthetic process3.84E-04
26GO:0042371: vitamin K biosynthetic process3.84E-04
27GO:0080093: regulation of photorespiration3.84E-04
28GO:0031998: regulation of fatty acid beta-oxidation3.84E-04
29GO:0034337: RNA folding3.84E-04
30GO:0010114: response to red light4.07E-04
31GO:0009657: plastid organization5.32E-04
32GO:0006098: pentose-phosphate shunt6.38E-04
33GO:1902326: positive regulation of chlorophyll biosynthetic process8.33E-04
34GO:0010541: acropetal auxin transport8.33E-04
35GO:0071457: cellular response to ozone8.33E-04
36GO:0034470: ncRNA processing8.33E-04
37GO:0006810: transport1.01E-03
38GO:0043085: positive regulation of catalytic activity1.01E-03
39GO:0006094: gluconeogenesis1.31E-03
40GO:0009767: photosynthetic electron transport chain1.31E-03
41GO:0090391: granum assembly1.35E-03
42GO:0010160: formation of animal organ boundary1.35E-03
43GO:0005977: glycogen metabolic process1.35E-03
44GO:0018298: protein-chromophore linkage1.37E-03
45GO:0010143: cutin biosynthetic process1.47E-03
46GO:0010218: response to far red light1.55E-03
47GO:0055114: oxidation-reduction process1.72E-03
48GO:0006636: unsaturated fatty acid biosynthetic process1.84E-03
49GO:0009853: photorespiration1.85E-03
50GO:0009637: response to blue light1.85E-03
51GO:0009152: purine ribonucleotide biosynthetic process1.95E-03
52GO:0046653: tetrahydrofolate metabolic process1.95E-03
53GO:0043481: anthocyanin accumulation in tissues in response to UV light1.95E-03
54GO:0009052: pentose-phosphate shunt, non-oxidative branch1.95E-03
55GO:1902358: sulfate transmembrane transport1.95E-03
56GO:0006020: inositol metabolic process1.95E-03
57GO:0009735: response to cytokinin2.23E-03
58GO:0009765: photosynthesis, light harvesting2.62E-03
59GO:0045727: positive regulation of translation2.62E-03
60GO:0015994: chlorophyll metabolic process2.62E-03
61GO:2000122: negative regulation of stomatal complex development2.62E-03
62GO:0006546: glycine catabolic process2.62E-03
63GO:0006021: inositol biosynthetic process2.62E-03
64GO:0010021: amylopectin biosynthetic process2.62E-03
65GO:0010037: response to carbon dioxide2.62E-03
66GO:0015976: carbon utilization2.62E-03
67GO:0071486: cellular response to high light intensity2.62E-03
68GO:0006465: signal peptide processing3.35E-03
69GO:0071493: cellular response to UV-B3.35E-03
70GO:0006564: L-serine biosynthetic process3.35E-03
71GO:0010236: plastoquinone biosynthetic process3.35E-03
72GO:0006097: glyoxylate cycle3.35E-03
73GO:0042631: cellular response to water deprivation3.75E-03
74GO:0006364: rRNA processing3.75E-03
75GO:0009958: positive gravitropism4.05E-03
76GO:0060918: auxin transport4.14E-03
77GO:1902456: regulation of stomatal opening4.14E-03
78GO:0009228: thiamine biosynthetic process4.14E-03
79GO:0046855: inositol phosphate dephosphorylation4.14E-03
80GO:0042549: photosystem II stabilization4.14E-03
81GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.14E-03
82GO:0006096: glycolytic process4.64E-03
83GO:0019252: starch biosynthetic process4.67E-03
84GO:0009955: adaxial/abaxial pattern specification4.99E-03
85GO:0071333: cellular response to glucose stimulus4.99E-03
86GO:0010189: vitamin E biosynthetic process4.99E-03
87GO:0009854: oxidative photosynthetic carbon pathway4.99E-03
88GO:0010019: chloroplast-nucleus signaling pathway4.99E-03
89GO:0009772: photosynthetic electron transport in photosystem II5.89E-03
90GO:0010196: nonphotochemical quenching5.89E-03
91GO:0009645: response to low light intensity stimulus5.89E-03
92GO:0008272: sulfate transport5.89E-03
93GO:0009769: photosynthesis, light harvesting in photosystem II5.89E-03
94GO:0048564: photosystem I assembly6.85E-03
95GO:0009642: response to light intensity6.85E-03
96GO:0010078: maintenance of root meristem identity6.85E-03
97GO:0009704: de-etiolation6.85E-03
98GO:0052543: callose deposition in cell wall6.85E-03
99GO:0010027: thylakoid membrane organization7.24E-03
100GO:0071482: cellular response to light stimulus7.86E-03
101GO:0019430: removal of superoxide radicals7.86E-03
102GO:0043562: cellular response to nitrogen levels7.86E-03
103GO:0017004: cytochrome complex assembly7.86E-03
104GO:0005975: carbohydrate metabolic process8.82E-03
105GO:0009821: alkaloid biosynthetic process8.92E-03
106GO:0010206: photosystem II repair8.92E-03
107GO:0019432: triglyceride biosynthetic process8.92E-03
108GO:0090333: regulation of stomatal closure8.92E-03
109GO:0006783: heme biosynthetic process8.92E-03
110GO:0006779: porphyrin-containing compound biosynthetic process1.00E-02
111GO:0005982: starch metabolic process1.00E-02
112GO:0048527: lateral root development1.10E-02
113GO:0006782: protoporphyrinogen IX biosynthetic process1.12E-02
114GO:0009641: shade avoidance1.12E-02
115GO:0006949: syncytium formation1.12E-02
116GO:0019684: photosynthesis, light reaction1.24E-02
117GO:0006415: translational termination1.24E-02
118GO:0000272: polysaccharide catabolic process1.24E-02
119GO:0018119: peptidyl-cysteine S-nitrosylation1.24E-02
120GO:0009684: indoleacetic acid biosynthetic process1.24E-02
121GO:0034599: cellular response to oxidative stress1.26E-02
122GO:0006790: sulfur compound metabolic process1.37E-02
123GO:0016024: CDP-diacylglycerol biosynthetic process1.37E-02
124GO:0008361: regulation of cell size1.37E-02
125GO:0010588: cotyledon vascular tissue pattern formation1.49E-02
126GO:0030048: actin filament-based movement1.49E-02
127GO:0006108: malate metabolic process1.49E-02
128GO:0006006: glucose metabolic process1.49E-02
129GO:0048467: gynoecium development1.63E-02
130GO:0019253: reductive pentose-phosphate cycle1.63E-02
131GO:0010223: secondary shoot formation1.63E-02
132GO:0010540: basipetal auxin transport1.63E-02
133GO:0009266: response to temperature stimulus1.63E-02
134GO:0046854: phosphatidylinositol phosphorylation1.77E-02
135GO:0009409: response to cold1.91E-02
136GO:0042254: ribosome biogenesis2.11E-02
137GO:0051603: proteolysis involved in cellular protein catabolic process2.17E-02
138GO:0006418: tRNA aminoacylation for protein translation2.20E-02
139GO:0007017: microtubule-based process2.20E-02
140GO:0019915: lipid storage2.36E-02
141GO:0061077: chaperone-mediated protein folding2.36E-02
142GO:0009269: response to desiccation2.36E-02
143GO:0016114: terpenoid biosynthetic process2.36E-02
144GO:0030245: cellulose catabolic process2.51E-02
145GO:0016226: iron-sulfur cluster assembly2.51E-02
146GO:0030433: ubiquitin-dependent ERAD pathway2.51E-02
147GO:0019748: secondary metabolic process2.51E-02
148GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.67E-02
149GO:0071215: cellular response to abscisic acid stimulus2.67E-02
150GO:0048443: stamen development2.84E-02
151GO:0009306: protein secretion2.84E-02
152GO:0009416: response to light stimulus2.92E-02
153GO:0016117: carotenoid biosynthetic process3.01E-02
154GO:0042335: cuticle development3.18E-02
155GO:0080022: primary root development3.18E-02
156GO:0010087: phloem or xylem histogenesis3.18E-02
157GO:0010118: stomatal movement3.18E-02
158GO:0006520: cellular amino acid metabolic process3.35E-02
159GO:0071472: cellular response to salt stress3.35E-02
160GO:0006662: glycerol ether metabolic process3.35E-02
161GO:0015986: ATP synthesis coupled proton transport3.53E-02
162GO:0048825: cotyledon development3.71E-02
163GO:0009851: auxin biosynthetic process3.71E-02
164GO:0006869: lipid transport3.78E-02
165GO:0010193: response to ozone3.89E-02
166GO:0009058: biosynthetic process3.94E-02
167GO:0032502: developmental process4.08E-02
168GO:0032259: methylation4.14E-02
169GO:1901657: glycosyl compound metabolic process4.27E-02
170GO:0009639: response to red or far red light4.46E-02
171GO:0009828: plant-type cell wall loosening4.46E-02
172GO:0006633: fatty acid biosynthetic process4.68E-02
RankGO TermAdjusted P value
1GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
2GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
3GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
4GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
5GO:0004822: isoleucine-tRNA ligase activity0.00E+00
6GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
7GO:0008465: glycerate dehydrogenase activity0.00E+00
8GO:0046408: chlorophyll synthetase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
12GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
13GO:0019843: rRNA binding3.48E-06
14GO:0016851: magnesium chelatase activity5.04E-05
15GO:0009011: starch synthase activity8.90E-05
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.90E-05
17GO:0016168: chlorophyll binding1.24E-04
18GO:0031409: pigment binding1.59E-04
19GO:0004332: fructose-bisphosphate aldolase activity1.99E-04
20GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.69E-04
21GO:0019899: enzyme binding3.47E-04
22GO:0009374: biotin binding3.84E-04
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.84E-04
24GO:0005344: oxygen transporter activity3.84E-04
25GO:0035671: enone reductase activity3.84E-04
26GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.84E-04
27GO:0046906: tetrapyrrole binding3.84E-04
28GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity8.33E-04
29GO:0052832: inositol monophosphate 3-phosphatase activity8.33E-04
30GO:0033201: alpha-1,4-glucan synthase activity8.33E-04
31GO:0080097: L-tryptophan:pyruvate aminotransferase activity8.33E-04
32GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity8.33E-04
33GO:0008934: inositol monophosphate 1-phosphatase activity8.33E-04
34GO:0052833: inositol monophosphate 4-phosphatase activity8.33E-04
35GO:0019156: isoamylase activity8.33E-04
36GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.33E-04
37GO:0008883: glutamyl-tRNA reductase activity8.33E-04
38GO:0047746: chlorophyllase activity8.33E-04
39GO:0042389: omega-3 fatty acid desaturase activity8.33E-04
40GO:0010297: heteropolysaccharide binding8.33E-04
41GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity8.33E-04
42GO:0004617: phosphoglycerate dehydrogenase activity8.33E-04
43GO:0004047: aminomethyltransferase activity8.33E-04
44GO:0004565: beta-galactosidase activity1.31E-03
45GO:0004373: glycogen (starch) synthase activity1.35E-03
46GO:0050734: hydroxycinnamoyltransferase activity1.35E-03
47GO:0002161: aminoacyl-tRNA editing activity1.35E-03
48GO:0004751: ribose-5-phosphate isomerase activity1.35E-03
49GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.35E-03
50GO:0008864: formyltetrahydrofolate deformylase activity1.35E-03
51GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.35E-03
52GO:0008266: poly(U) RNA binding1.47E-03
53GO:0016149: translation release factor activity, codon specific1.95E-03
54GO:0001872: (1->3)-beta-D-glucan binding1.95E-03
55GO:0005528: FK506 binding2.04E-03
56GO:0004185: serine-type carboxypeptidase activity2.56E-03
57GO:0008453: alanine-glyoxylate transaminase activity2.62E-03
58GO:0045430: chalcone isomerase activity2.62E-03
59GO:0043495: protein anchor2.62E-03
60GO:0005509: calcium ion binding3.00E-03
61GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.12E-03
62GO:0051287: NAD binding3.27E-03
63GO:0016846: carbon-sulfur lyase activity3.35E-03
64GO:0003989: acetyl-CoA carboxylase activity3.35E-03
65GO:0042802: identical protein binding3.67E-03
66GO:0004556: alpha-amylase activity4.14E-03
67GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.14E-03
68GO:0004784: superoxide dismutase activity4.14E-03
69GO:0016615: malate dehydrogenase activity4.14E-03
70GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.14E-03
71GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.99E-03
72GO:0030060: L-malate dehydrogenase activity4.99E-03
73GO:0048038: quinone binding5.00E-03
74GO:0008271: secondary active sulfate transmembrane transporter activity7.86E-03
75GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.86E-03
76GO:0003747: translation release factor activity8.92E-03
77GO:0016844: strictosidine synthase activity1.00E-02
78GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.00E-02
79GO:0008047: enzyme activator activity1.12E-02
80GO:0047372: acylglycerol lipase activity1.24E-02
81GO:0000049: tRNA binding1.37E-02
82GO:0050661: NADP binding1.37E-02
83GO:0015116: sulfate transmembrane transporter activity1.37E-02
84GO:0003725: double-stranded RNA binding1.49E-02
85GO:0010329: auxin efflux transmembrane transporter activity1.49E-02
86GO:0004022: alcohol dehydrogenase (NAD) activity1.49E-02
87GO:0004089: carbonate dehydratase activity1.49E-02
88GO:0031072: heat shock protein binding1.49E-02
89GO:0003735: structural constituent of ribosome1.57E-02
90GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.63E-02
91GO:0003774: motor activity1.63E-02
92GO:0051537: 2 iron, 2 sulfur cluster binding1.68E-02
93GO:0016491: oxidoreductase activity1.81E-02
94GO:0008168: methyltransferase activity1.96E-02
95GO:0008289: lipid binding2.04E-02
96GO:0051536: iron-sulfur cluster binding2.05E-02
97GO:0016788: hydrolase activity, acting on ester bonds2.11E-02
98GO:0008810: cellulase activity2.67E-02
99GO:0022891: substrate-specific transmembrane transporter activity2.67E-02
100GO:0030599: pectinesterase activity2.81E-02
101GO:0003727: single-stranded RNA binding2.84E-02
102GO:0047134: protein-disulfide reductase activity3.01E-02
103GO:0004812: aminoacyl-tRNA ligase activity3.01E-02
104GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.35E-02
105GO:0050662: coenzyme binding3.53E-02
106GO:0004791: thioredoxin-disulfide reductase activity3.53E-02
107GO:0016853: isomerase activity3.53E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.27E-02
109GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.37E-02
110GO:0016791: phosphatase activity4.46E-02
111GO:0008483: transaminase activity4.66E-02
112GO:0016722: oxidoreductase activity, oxidizing metal ions4.66E-02
113GO:0005200: structural constituent of cytoskeleton4.66E-02
114GO:0009055: electron carrier activity4.75E-02
115GO:0016597: amino acid binding4.85E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009507: chloroplast1.85E-56
4GO:0009535: chloroplast thylakoid membrane2.28E-35
5GO:0009579: thylakoid1.33E-23
6GO:0009534: chloroplast thylakoid1.51E-23
7GO:0009543: chloroplast thylakoid lumen2.89E-20
8GO:0009941: chloroplast envelope1.36E-17
9GO:0009570: chloroplast stroma1.68E-17
10GO:0009654: photosystem II oxygen evolving complex1.08E-12
11GO:0031977: thylakoid lumen4.42E-12
12GO:0030095: chloroplast photosystem II1.19E-09
13GO:0019898: extrinsic component of membrane1.69E-09
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.57E-09
15GO:0010287: plastoglobule1.88E-07
16GO:0010007: magnesium chelatase complex2.30E-05
17GO:0031969: chloroplast membrane7.14E-05
18GO:0048046: apoplast7.70E-05
19GO:0030076: light-harvesting complex1.35E-04
20GO:0009515: granal stacked thylakoid3.84E-04
21GO:0005787: signal peptidase complex3.84E-04
22GO:0009547: plastid ribosome3.84E-04
23GO:0005840: ribosome4.16E-04
24GO:0009522: photosystem I5.19E-04
25GO:0009523: photosystem II5.67E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex8.33E-04
27GO:0010319: stromule8.52E-04
28GO:0033281: TAT protein transport complex1.35E-03
29GO:0009317: acetyl-CoA carboxylase complex1.35E-03
30GO:0042651: thylakoid membrane2.25E-03
31GO:0009517: PSII associated light-harvesting complex II2.62E-03
32GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.14E-03
33GO:0009501: amyloplast6.85E-03
34GO:0009539: photosystem II reaction center7.86E-03
35GO:0045298: tubulin complex8.92E-03
36GO:0005763: mitochondrial small ribosomal subunit8.92E-03
37GO:0016459: myosin complex1.12E-02
38GO:0005777: peroxisome1.15E-02
39GO:0000311: plastid large ribosomal subunit1.37E-02
40GO:0032040: small-subunit processome1.37E-02
41GO:0043234: protein complex1.91E-02
42GO:0015935: small ribosomal subunit2.36E-02
43GO:0005773: vacuole2.56E-02
44GO:0005618: cell wall2.88E-02
45GO:0009706: chloroplast inner membrane2.99E-02
46GO:0005623: cell3.84E-02
47GO:0009505: plant-type cell wall4.37E-02
48GO:0016020: membrane4.89E-02
49GO:0016021: integral component of membrane4.96E-02
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Gene type



Gene DE type