co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G50590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:1905177: tracheary element differentiation	0.00E+00
5	GO:0005992: trehalose biosynthetic process	5.63E-05
6	GO:0034757: negative regulation of iron ion transport	2.20E-04
7	GO:0051382: kinetochore assembly	2.20E-04
8	GO:1902025: nitrate import	2.20E-04
9	GO:0009090: homoserine biosynthetic process	2.20E-04
10	GO:0090548: response to nitrate starvation	2.20E-04
11	GO:0000066: mitochondrial ornithine transport	2.20E-04
12	GO:0050801: ion homeostasis	2.20E-04
13	GO:0000373: Group II intron splicing	2.86E-04
14	GO:0031297: replication fork processing	4.90E-04
15	GO:1900871: chloroplast mRNA modification	4.90E-04
16	GO:0010271: regulation of chlorophyll catabolic process	4.90E-04
17	GO:1900033: negative regulation of trichome patterning	4.90E-04
18	GO:0010582: floral meristem determinacy	5.30E-04
19	GO:0010447: response to acidic pH	7.98E-04
20	GO:0080117: secondary growth	7.98E-04
21	GO:0010623: programmed cell death involved in cell development	7.98E-04
22	GO:0071398: cellular response to fatty acid	7.98E-04
23	GO:0010431: seed maturation	1.12E-03
24	GO:0051513: regulation of monopolar cell growth	1.14E-03
25	GO:0034059: response to anoxia	1.14E-03
26	GO:1990019: protein storage vacuole organization	1.14E-03
27	GO:0009800: cinnamic acid biosynthetic process	1.14E-03
28	GO:0046836: glycolipid transport	1.14E-03
29	GO:0009067: aspartate family amino acid biosynthetic process	1.14E-03
30	GO:0010371: regulation of gibberellin biosynthetic process	1.14E-03
31	GO:0048442: sepal development	1.51E-03
32	GO:0010508: positive regulation of autophagy	1.51E-03
33	GO:0008295: spermidine biosynthetic process	1.51E-03
34	GO:0009755: hormone-mediated signaling pathway	1.51E-03
35	GO:0048629: trichome patterning	1.51E-03
36	GO:0010438: cellular response to sulfur starvation	1.93E-03
37	GO:0010158: abaxial cell fate specification	1.93E-03
38	GO:0080110: sporopollenin biosynthetic process	1.93E-03
39	GO:0016131: brassinosteroid metabolic process	1.93E-03
40	GO:0000302: response to reactive oxygen species	2.23E-03
41	GO:0006559: L-phenylalanine catabolic process	2.38E-03
42	GO:0048831: regulation of shoot system development	2.38E-03
43	GO:0010190: cytochrome b6f complex assembly	2.38E-03
44	GO:0003006: developmental process involved in reproduction	2.38E-03
45	GO:0048827: phyllome development	2.38E-03
46	GO:0009648: photoperiodism	2.86E-03
47	GO:2000067: regulation of root morphogenesis	2.86E-03
48	GO:0031930: mitochondria-nucleus signaling pathway	2.86E-03
49	GO:0010076: maintenance of floral meristem identity	2.86E-03
50	GO:0048509: regulation of meristem development	2.86E-03
51	GO:0009088: threonine biosynthetic process	2.86E-03
52	GO:0006955: immune response	3.36E-03
53	GO:0010050: vegetative phase change	3.36E-03
54	GO:0000712: resolution of meiotic recombination intermediates	3.36E-03
55	GO:0009819: drought recovery	3.90E-03
56	GO:0070413: trehalose metabolism in response to stress	3.90E-03
57	GO:0010439: regulation of glucosinolate biosynthetic process	3.90E-03
58	GO:0009850: auxin metabolic process	3.90E-03
59	GO:2000070: regulation of response to water deprivation	3.90E-03
60	GO:0000160: phosphorelay signal transduction system	4.40E-03
61	GO:0007129: synapsis	4.47E-03
62	GO:0009051: pentose-phosphate shunt, oxidative branch	5.06E-03
63	GO:0006098: pentose-phosphate shunt	5.06E-03
64	GO:0048507: meristem development	5.06E-03
65	GO:0010018: far-red light signaling pathway	5.68E-03
66	GO:0009086: methionine biosynthetic process	5.68E-03
67	GO:1900865: chloroplast RNA modification	5.68E-03
68	GO:0048441: petal development	6.32E-03
69	GO:0009682: induced systemic resistance	6.98E-03
70	GO:0009089: lysine biosynthetic process via diaminopimelate	6.98E-03
71	GO:0009636: response to toxic substance	7.68E-03
72	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.68E-03
73	GO:0006094: gluconeogenesis	8.39E-03
74	GO:0006006: glucose metabolic process	8.39E-03
75	GO:0010229: inflorescence development	8.39E-03
76	GO:0010540: basipetal auxin transport	9.13E-03
77	GO:0048467: gynoecium development	9.13E-03
78	GO:0048440: carpel development	9.13E-03
79	GO:0009736: cytokinin-activated signaling pathway	9.22E-03
80	GO:0010039: response to iron ion	9.90E-03
81	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.00E-02
82	GO:0019762: glucosinolate catabolic process	1.07E-02
83	GO:0042753: positive regulation of circadian rhythm	1.07E-02
84	GO:0006863: purine nucleobase transport	1.07E-02
85	GO:0048316: seed development	1.13E-02
86	GO:0030150: protein import into mitochondrial matrix	1.15E-02
87	GO:0080147: root hair cell development	1.15E-02
88	GO:0016998: cell wall macromolecule catabolic process	1.32E-02
89	GO:0009693: ethylene biosynthetic process	1.49E-02
90	GO:0071215: cellular response to abscisic acid stimulus	1.49E-02
91	GO:0010082: regulation of root meristem growth	1.49E-02
92	GO:0009625: response to insect	1.49E-02
93	GO:0010089: xylem development	1.58E-02
94	GO:0010584: pollen exine formation	1.58E-02
95	GO:0048443: stamen development	1.58E-02
96	GO:0070417: cellular response to cold	1.68E-02
97	GO:0010087: phloem or xylem histogenesis	1.77E-02
98	GO:0008150: biological_process	1.82E-02
99	GO:0009741: response to brassinosteroid	1.87E-02
100	GO:0010268: brassinosteroid homeostasis	1.87E-02
101	GO:0006520: cellular amino acid metabolic process	1.87E-02
102	GO:0010182: sugar mediated signaling pathway	1.87E-02
103	GO:0048544: recognition of pollen	1.97E-02
104	GO:0048825: cotyledon development	2.07E-02
105	GO:0055072: iron ion homeostasis	2.07E-02
106	GO:0071554: cell wall organization or biogenesis	2.17E-02
107	GO:0040008: regulation of growth	2.18E-02
108	GO:0007264: small GTPase mediated signal transduction	2.28E-02
109	GO:0010583: response to cyclopentenone	2.28E-02
110	GO:0019761: glucosinolate biosynthetic process	2.28E-02
111	GO:0009639: response to red or far red light	2.49E-02
112	GO:0006464: cellular protein modification process	2.49E-02
113	GO:0009911: positive regulation of flower development	2.82E-02
114	GO:0001666: response to hypoxia	2.82E-02
115	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.94E-02
116	GO:0010029: regulation of seed germination	2.94E-02
117	GO:0009416: response to light stimulus	3.23E-02
118	GO:0007568: aging	3.78E-02
119	GO:0006865: amino acid transport	3.91E-02
120	GO:0009867: jasmonic acid mediated signaling pathway	4.03E-02
121	GO:0034599: cellular response to oxidative stress	4.16E-02
122	GO:0006839: mitochondrial transport	4.43E-02
123	GO:0006631: fatty acid metabolic process	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0004805: trehalose-phosphatase activity	1.33E-05
2	GO:0005227: calcium activated cation channel activity	2.20E-04
3	GO:0042834: peptidoglycan binding	2.20E-04
4	GO:0005290: L-histidine transmembrane transporter activity	2.20E-04
5	GO:0008395: steroid hydroxylase activity	2.20E-04
6	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.20E-04
7	GO:0004766: spermidine synthase activity	4.90E-04
8	GO:0000064: L-ornithine transmembrane transporter activity	4.90E-04
9	GO:0004412: homoserine dehydrogenase activity	4.90E-04
10	GO:0050736: O-malonyltransferase activity	4.90E-04
11	GO:0009884: cytokinin receptor activity	4.90E-04
12	GO:0017118: lipoyltransferase activity	4.90E-04
13	GO:0045548: phenylalanine ammonia-lyase activity	7.98E-04
14	GO:0005034: osmosensor activity	7.98E-04
15	GO:0001872: (1->3)-beta-D-glucan binding	1.14E-03
16	GO:0015189: L-lysine transmembrane transporter activity	1.14E-03
17	GO:0017089: glycolipid transporter activity	1.14E-03
18	GO:0004072: aspartate kinase activity	1.14E-03
19	GO:0015181: arginine transmembrane transporter activity	1.14E-03
20	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.51E-03
21	GO:0051861: glycolipid binding	1.51E-03
22	GO:0052793: pectin acetylesterase activity	1.51E-03
23	GO:0042277: peptide binding	1.51E-03
24	GO:0004332: fructose-bisphosphate aldolase activity	2.38E-03
25	GO:0004709: MAP kinase kinase kinase activity	2.38E-03
26	GO:0004130: cytochrome-c peroxidase activity	2.38E-03
27	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.38E-03
28	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	2.38E-03
29	GO:0016688: L-ascorbate peroxidase activity	2.38E-03
30	GO:0019900: kinase binding	2.86E-03
31	GO:0043022: ribosome binding	3.90E-03
32	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.06E-03
33	GO:0050661: NADP binding	6.04E-03
34	GO:0004673: protein histidine kinase activity	6.32E-03
35	GO:0030234: enzyme regulator activity	6.32E-03
36	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.98E-03
37	GO:0015266: protein channel activity	8.39E-03
38	GO:0000155: phosphorelay sensor kinase activity	8.39E-03
39	GO:0003690: double-stranded DNA binding	9.54E-03
40	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.07E-02
41	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.07E-02
42	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.07E-02
43	GO:0031418: L-ascorbic acid binding	1.15E-02
44	GO:0043424: protein histidine kinase binding	1.23E-02
45	GO:0005345: purine nucleobase transmembrane transporter activity	1.23E-02
46	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.88E-02
47	GO:0050662: coenzyme binding	1.97E-02
48	GO:0019901: protein kinase binding	2.07E-02
49	GO:0004518: nuclease activity	2.28E-02
50	GO:0000156: phosphorelay response regulator activity	2.38E-02
51	GO:0016791: phosphatase activity	2.49E-02
52	GO:0016413: O-acetyltransferase activity	2.71E-02
53	GO:0016597: amino acid binding	2.71E-02
54	GO:0051213: dioxygenase activity	2.82E-02
55	GO:0042802: identical protein binding	2.90E-02
56	GO:0030247: polysaccharide binding	3.17E-02
57	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.41E-02
58	GO:0005096: GTPase activator activity	3.53E-02
59	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.03E-02
60	GO:0003993: acid phosphatase activity	4.16E-02
61	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.30E-02
62	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0071821: FANCM-MHF complex	2.20E-04
2	GO:0043240: Fanconi anaemia nuclear complex	2.20E-04
3	GO:0031305: integral component of mitochondrial inner membrane	3.90E-03
4	GO:0048226: Casparian strip	3.90E-03
5	GO:0010494: cytoplasmic stress granule	5.06E-03
6	GO:0030095: chloroplast photosystem II	9.13E-03
7	GO:0009654: photosystem II oxygen evolving complex	1.23E-02
8	GO:0042651: thylakoid membrane	1.23E-02
9	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.58E-02
10	GO:0005770: late endosome	1.87E-02
11	GO:0019898: extrinsic component of membrane	2.07E-02
12	GO:0000932: P-body	2.82E-02
13	GO:0046658: anchored component of plasma membrane	3.02E-02
14	GO:0000151: ubiquitin ligase complex	3.41E-02
15	GO:0009579: thylakoid	4.03E-02
16	GO:0031977: thylakoid lumen	4.56E-02