co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G49780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0031222: arabinan catabolic process	0.00E+00
5	GO:0042352: GDP-L-fucose salvage	0.00E+00
6	GO:0001778: plasma membrane repair	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.81E-05
9	GO:0048497: maintenance of floral organ identity	2.24E-04
10	GO:0010480: microsporocyte differentiation	5.18E-04
11	GO:0006426: glycyl-tRNA aminoacylation	5.18E-04
12	GO:0043686: co-translational protein modification	5.18E-04
13	GO:0015904: tetracycline transport	5.18E-04
14	GO:0010726: positive regulation of hydrogen peroxide metabolic process	5.18E-04
15	GO:0006438: valyl-tRNA aminoacylation	5.18E-04
16	GO:0046520: sphingoid biosynthetic process	5.18E-04
17	GO:0018026: peptidyl-lysine monomethylation	1.11E-03
18	GO:0009786: regulation of asymmetric cell division	1.11E-03
19	GO:0046740: transport of virus in host, cell to cell	1.11E-03
20	GO:0031648: protein destabilization	1.11E-03
21	GO:2000123: positive regulation of stomatal complex development	1.11E-03
22	GO:0006741: NADP biosynthetic process	1.11E-03
23	GO:0009733: response to auxin	1.64E-03
24	GO:0048575: short-day photoperiodism, flowering	1.82E-03
25	GO:0019674: NAD metabolic process	1.82E-03
26	GO:0045910: negative regulation of DNA recombination	1.82E-03
27	GO:0006612: protein targeting to membrane	2.64E-03
28	GO:0010321: regulation of vegetative phase change	2.64E-03
29	GO:0019363: pyridine nucleotide biosynthetic process	2.64E-03
30	GO:0010371: regulation of gibberellin biosynthetic process	2.64E-03
31	GO:0032456: endocytic recycling	2.64E-03
32	GO:0007276: gamete generation	2.64E-03
33	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.64E-03
34	GO:0006351: transcription, DNA-templated	2.72E-03
35	GO:0006468: protein phosphorylation	3.11E-03
36	GO:2000038: regulation of stomatal complex development	3.56E-03
37	GO:0042991: transcription factor import into nucleus	3.56E-03
38	GO:0009755: hormone-mediated signaling pathway	3.56E-03
39	GO:0048629: trichome patterning	3.56E-03
40	GO:0042274: ribosomal small subunit biogenesis	3.56E-03
41	GO:0009793: embryo development ending in seed dormancy	4.29E-03
42	GO:0031365: N-terminal protein amino acid modification	4.57E-03
43	GO:0010438: cellular response to sulfur starvation	4.57E-03
44	GO:0010375: stomatal complex patterning	4.57E-03
45	GO:0009696: salicylic acid metabolic process	4.57E-03
46	GO:0045487: gibberellin catabolic process	4.57E-03
47	GO:0009686: gibberellin biosynthetic process	4.62E-03
48	GO:0040008: regulation of growth	4.72E-03
49	GO:0006355: regulation of transcription, DNA-templated	5.32E-03
50	GO:0042793: transcription from plastid promoter	5.66E-03
51	GO:0003006: developmental process involved in reproduction	5.66E-03
52	GO:0010942: positive regulation of cell death	5.66E-03
53	GO:0010405: arabinogalactan protein metabolic process	5.66E-03
54	GO:0010358: leaf shaping	5.66E-03
55	GO:0016554: cytidine to uridine editing	5.66E-03
56	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.66E-03
57	GO:0009913: epidermal cell differentiation	5.66E-03
58	GO:1902456: regulation of stomatal opening	5.66E-03
59	GO:0009612: response to mechanical stimulus	6.83E-03
60	GO:0030488: tRNA methylation	6.83E-03
61	GO:0031930: mitochondria-nucleus signaling pathway	6.83E-03
62	GO:0048825: cotyledon development	7.35E-03
63	GO:0071554: cell wall organization or biogenesis	7.87E-03
64	GO:0045995: regulation of embryonic development	8.09E-03
65	GO:0048437: floral organ development	8.09E-03
66	GO:0032502: developmental process	8.41E-03
67	GO:0010583: response to cyclopentenone	8.41E-03
68	GO:0009690: cytokinin metabolic process	9.42E-03
69	GO:0009704: de-etiolation	9.42E-03
70	GO:2000070: regulation of response to water deprivation	9.42E-03
71	GO:0010492: maintenance of shoot apical meristem identity	9.42E-03
72	GO:0000105: histidine biosynthetic process	9.42E-03
73	GO:0009819: drought recovery	9.42E-03
74	GO:0042255: ribosome assembly	9.42E-03
75	GO:0046620: regulation of organ growth	9.42E-03
76	GO:0006353: DNA-templated transcription, termination	9.42E-03
77	GO:0006402: mRNA catabolic process	9.42E-03
78	GO:0010439: regulation of glucosinolate biosynthetic process	9.42E-03
79	GO:0009567: double fertilization forming a zygote and endosperm	9.56E-03
80	GO:0010027: thylakoid membrane organization	1.14E-02
81	GO:0016310: phosphorylation	1.20E-02
82	GO:0009056: catabolic process	1.23E-02
83	GO:0000902: cell morphogenesis	1.23E-02
84	GO:0048507: meristem development	1.23E-02
85	GO:0051865: protein autoubiquitination	1.23E-02
86	GO:0009734: auxin-activated signaling pathway	1.33E-02
87	GO:0048573: photoperiodism, flowering	1.35E-02
88	GO:0009098: leucine biosynthetic process	1.38E-02
89	GO:1900865: chloroplast RNA modification	1.38E-02
90	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.55E-02
91	GO:0048829: root cap development	1.55E-02
92	GO:0009641: shade avoidance	1.55E-02
93	GO:0006298: mismatch repair	1.55E-02
94	GO:0006949: syncytium formation	1.55E-02
95	GO:0048229: gametophyte development	1.71E-02
96	GO:0009682: induced systemic resistance	1.71E-02
97	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.89E-02
98	GO:0012501: programmed cell death	1.89E-02
99	GO:0010582: floral meristem determinacy	1.89E-02
100	GO:0009867: jasmonic acid mediated signaling pathway	1.90E-02
101	GO:0009416: response to light stimulus	1.98E-02
102	GO:0010628: positive regulation of gene expression	2.07E-02
103	GO:2000028: regulation of photoperiodism, flowering	2.07E-02
104	GO:0010075: regulation of meristem growth	2.07E-02
105	GO:0009767: photosynthetic electron transport chain	2.07E-02
106	GO:0010588: cotyledon vascular tissue pattern formation	2.07E-02
107	GO:0010102: lateral root morphogenesis	2.07E-02
108	GO:0009691: cytokinin biosynthetic process	2.07E-02
109	GO:0010207: photosystem II assembly	2.25E-02
110	GO:0007034: vacuolar transport	2.25E-02
111	GO:0009887: animal organ morphogenesis	2.25E-02
112	GO:0009934: regulation of meristem structural organization	2.25E-02
113	GO:0006302: double-strand break repair	2.25E-02
114	GO:0048467: gynoecium development	2.25E-02
115	GO:0016042: lipid catabolic process	2.35E-02
116	GO:0009739: response to gibberellin	2.42E-02
117	GO:0090351: seedling development	2.44E-02
118	GO:0042546: cell wall biogenesis	2.55E-02
119	GO:0000162: tryptophan biosynthetic process	2.64E-02
120	GO:0005992: trehalose biosynthetic process	2.84E-02
121	GO:0019953: sexual reproduction	3.05E-02
122	GO:0006418: tRNA aminoacylation for protein translation	3.05E-02
123	GO:0051321: meiotic cell cycle	3.26E-02
124	GO:0016114: terpenoid biosynthetic process	3.26E-02
125	GO:0048511: rhythmic process	3.26E-02
126	GO:0010431: seed maturation	3.26E-02
127	GO:0048278: vesicle docking	3.26E-02
128	GO:0009736: cytokinin-activated signaling pathway	3.31E-02
129	GO:0009826: unidimensional cell growth	3.46E-02
130	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.48E-02
131	GO:0009909: regulation of flower development	3.66E-02
132	GO:0010082: regulation of root meristem growth	3.70E-02
133	GO:0009294: DNA mediated transformation	3.70E-02
134	GO:0009625: response to insect	3.70E-02
135	GO:0071215: cellular response to abscisic acid stimulus	3.70E-02
136	GO:0010091: trichome branching	3.93E-02
137	GO:0042127: regulation of cell proliferation	3.93E-02
138	GO:0045492: xylan biosynthetic process	3.93E-02
139	GO:0048367: shoot system development	4.03E-02
140	GO:0007165: signal transduction	4.36E-02
141	GO:0016567: protein ubiquitination	4.37E-02
142	GO:0080022: primary root development	4.40E-02
143	GO:0008033: tRNA processing	4.40E-02
144	GO:0010087: phloem or xylem histogenesis	4.40E-02
145	GO:0010118: stomatal movement	4.40E-02
146	GO:0048653: anther development	4.40E-02
147	GO:0010182: sugar mediated signaling pathway	4.64E-02
148	GO:0009741: response to brassinosteroid	4.64E-02
149	GO:0010268: brassinosteroid homeostasis	4.64E-02
150	GO:0009960: endosperm development	4.64E-02
151	GO:0010305: leaf vascular tissue pattern formation	4.64E-02
152	GO:0009958: positive gravitropism	4.64E-02
153	GO:0009908: flower development	4.87E-02
154	GO:0007018: microtubule-based movement	4.88E-02
155	GO:0061025: membrane fusion	4.88E-02
156	GO:0006814: sodium ion transport	4.88E-02
157	GO:0042752: regulation of circadian rhythm	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0047661: amino-acid racemase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
5	GO:0050201: fucokinase activity	0.00E+00
6	GO:0071633: dihydroceramidase activity	0.00E+00
7	GO:0001872: (1->3)-beta-D-glucan binding	8.48E-05
8	GO:0004832: valine-tRNA ligase activity	5.18E-04
9	GO:0004820: glycine-tRNA ligase activity	5.18E-04
10	GO:0042736: NADH kinase activity	5.18E-04
11	GO:0010012: steroid 22-alpha hydroxylase activity	5.18E-04
12	GO:0000170: sphingosine hydroxylase activity	5.18E-04
13	GO:0050139: nicotinate-N-glucosyltransferase activity	5.18E-04
14	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	5.18E-04
15	GO:0042586: peptide deformylase activity	5.18E-04
16	GO:0052381: tRNA dimethylallyltransferase activity	5.18E-04
17	GO:0003852: 2-isopropylmalate synthase activity	1.11E-03
18	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.11E-03
19	GO:0010296: prenylcysteine methylesterase activity	1.11E-03
20	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.11E-03
21	GO:0042284: sphingolipid delta-4 desaturase activity	1.11E-03
22	GO:0008493: tetracycline transporter activity	1.11E-03
23	GO:1901981: phosphatidylinositol phosphate binding	1.11E-03
24	GO:0004674: protein serine/threonine kinase activity	1.41E-03
25	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.37E-03
26	GO:0080031: methyl salicylate esterase activity	2.64E-03
27	GO:0045544: gibberellin 20-oxidase activity	2.64E-03
28	GO:0008508: bile acid:sodium symporter activity	2.64E-03
29	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.64E-03
30	GO:0046556: alpha-L-arabinofuranosidase activity	3.56E-03
31	GO:0004335: galactokinase activity	3.56E-03
32	GO:0016279: protein-lysine N-methyltransferase activity	3.56E-03
33	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.56E-03
34	GO:0019199: transmembrane receptor protein kinase activity	3.56E-03
35	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.57E-03
36	GO:0004871: signal transducer activity	5.52E-03
37	GO:0030983: mismatched DNA binding	5.66E-03
38	GO:0080030: methyl indole-3-acetate esterase activity	5.66E-03
39	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.66E-03
40	GO:0004709: MAP kinase kinase kinase activity	5.66E-03
41	GO:0004722: protein serine/threonine phosphatase activity	5.98E-03
42	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.83E-03
43	GO:0016832: aldehyde-lyase activity	6.83E-03
44	GO:0051753: mannan synthase activity	6.83E-03
45	GO:0016301: kinase activity	6.89E-03
46	GO:0043565: sequence-specific DNA binding	7.83E-03
47	GO:0004519: endonuclease activity	8.51E-03
48	GO:0003951: NAD+ kinase activity	1.08E-02
49	GO:0008173: RNA methyltransferase activity	1.08E-02
50	GO:0016413: O-acetyltransferase activity	1.08E-02
51	GO:0030247: polysaccharide binding	1.35E-02
52	GO:0003677: DNA binding	1.44E-02
53	GO:0004805: trehalose-phosphatase activity	1.55E-02
54	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.65E-02
55	GO:0042803: protein homodimerization activity	1.92E-02
56	GO:0004672: protein kinase activity	2.15E-02
57	GO:0003712: transcription cofactor activity	2.44E-02
58	GO:0004190: aspartic-type endopeptidase activity	2.44E-02
59	GO:0043621: protein self-association	2.66E-02
60	GO:0009055: electron carrier activity	2.72E-02
61	GO:0005524: ATP binding	3.14E-02
62	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.16E-02
63	GO:0004176: ATP-dependent peptidase activity	3.26E-02
64	GO:0033612: receptor serine/threonine kinase binding	3.26E-02
65	GO:0003964: RNA-directed DNA polymerase activity	3.26E-02
66	GO:0008408: 3'-5' exonuclease activity	3.26E-02
67	GO:0010333: terpene synthase activity	3.26E-02
68	GO:0003690: double-stranded DNA binding	3.42E-02
69	GO:0016298: lipase activity	3.42E-02
70	GO:0003777: microtubule motor activity	3.66E-02
71	GO:0016788: hydrolase activity, acting on ester bonds	3.72E-02
72	GO:0003727: single-stranded RNA binding	3.93E-02
73	GO:0008289: lipid binding	3.97E-02
74	GO:0004812: aminoacyl-tRNA ligase activity	4.16E-02
75	GO:0004650: polygalacturonase activity	4.29E-02
76	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.64E-02
77	GO:0001085: RNA polymerase II transcription factor binding	4.64E-02
78	GO:0015035: protein disulfide oxidoreductase activity	4.83E-02
79	GO:0016853: isomerase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0032541: cortical endoplasmic reticulum	5.18E-04
2	GO:0000791: euchromatin	5.18E-04
3	GO:0030870: Mre11 complex	1.11E-03
4	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.11E-03
5	GO:0030139: endocytic vesicle	1.82E-03
6	GO:0032585: multivesicular body membrane	2.64E-03
7	GO:0009654: photosystem II oxygen evolving complex	3.51E-03
8	GO:0009544: chloroplast ATP synthase complex	3.56E-03
9	GO:0009898: cytoplasmic side of plasma membrane	3.56E-03
10	GO:0000795: synaptonemal complex	4.57E-03
11	GO:0005886: plasma membrane	5.26E-03
12	GO:0000815: ESCRT III complex	6.83E-03
13	GO:0019898: extrinsic component of membrane	7.35E-03
14	GO:0009986: cell surface	8.09E-03
15	GO:0005884: actin filament	1.71E-02
16	GO:0009508: plastid chromosome	2.07E-02
17	GO:0005578: proteinaceous extracellular matrix	2.07E-02
18	GO:0030095: chloroplast photosystem II	2.25E-02
19	GO:0005875: microtubule associated complex	2.64E-02
20	GO:0046658: anchored component of plasma membrane	2.99E-02
21	GO:0009532: plastid stroma	3.26E-02
22	GO:0015629: actin cytoskeleton	3.70E-02
23	GO:0010008: endosome membrane	4.03E-02
24	GO:0005871: kinesin complex	4.16E-02