co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G49730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071474: cellular hyperosmotic response	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
4	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
5	GO:0030155: regulation of cell adhesion	0.00E+00
6	GO:0098586: cellular response to virus	0.00E+00
7	GO:0009715: chalcone biosynthetic process	0.00E+00
8	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
9	GO:0090279: regulation of calcium ion import	0.00E+00
10	GO:0006114: glycerol biosynthetic process	0.00E+00
11	GO:0008298: intracellular mRNA localization	0.00E+00
12	GO:2001141: regulation of RNA biosynthetic process	1.66E-05
13	GO:0009904: chloroplast accumulation movement	4.91E-05
14	GO:0045038: protein import into chloroplast thylakoid membrane	4.91E-05
15	GO:0010190: cytochrome b6f complex assembly	7.23E-05
16	GO:0009903: chloroplast avoidance movement	1.00E-04
17	GO:0042371: vitamin K biosynthetic process	2.04E-04
18	GO:0043087: regulation of GTPase activity	2.04E-04
19	GO:0071461: cellular response to redox state	2.04E-04
20	GO:0034337: RNA folding	2.04E-04
21	GO:0010362: negative regulation of anion channel activity by blue light	2.04E-04
22	GO:0015969: guanosine tetraphosphate metabolic process	2.04E-04
23	GO:0031426: polycistronic mRNA processing	2.04E-04
24	GO:0051775: response to redox state	2.04E-04
25	GO:0000481: maturation of 5S rRNA	2.04E-04
26	GO:0071482: cellular response to light stimulus	2.11E-04
27	GO:0009658: chloroplast organization	2.13E-04
28	GO:0048507: meristem development	2.57E-04
29	GO:0043085: positive regulation of catalytic activity	4.16E-04
30	GO:0006352: DNA-templated transcription, initiation	4.16E-04
31	GO:0010155: regulation of proton transport	4.57E-04
32	GO:0051262: protein tetramerization	4.57E-04
33	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.57E-04
34	GO:0046741: transport of virus in host, tissue to tissue	4.57E-04
35	GO:0009629: response to gravity	4.57E-04
36	GO:0080005: photosystem stoichiometry adjustment	4.57E-04
37	GO:0010541: acropetal auxin transport	4.57E-04
38	GO:0000256: allantoin catabolic process	4.57E-04
39	GO:0009637: response to blue light	5.89E-04
40	GO:0005977: glycogen metabolic process	7.44E-04
41	GO:0000913: preprophase band assembly	7.44E-04
42	GO:0048281: inflorescence morphogenesis	7.44E-04
43	GO:0031022: nuclear migration along microfilament	7.44E-04
44	GO:0010160: formation of animal organ boundary	7.44E-04
45	GO:0010136: ureide catabolic process	7.44E-04
46	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	7.44E-04
47	GO:0051302: regulation of cell division	9.21E-04
48	GO:0043572: plastid fission	1.06E-03
49	GO:0006107: oxaloacetate metabolic process	1.06E-03
50	GO:0010239: chloroplast mRNA processing	1.06E-03
51	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.06E-03
52	GO:0009226: nucleotide-sugar biosynthetic process	1.06E-03
53	GO:0006145: purine nucleobase catabolic process	1.06E-03
54	GO:0010148: transpiration	1.06E-03
55	GO:0010731: protein glutathionylation	1.06E-03
56	GO:0010021: amylopectin biosynthetic process	1.41E-03
57	GO:0015976: carbon utilization	1.41E-03
58	GO:0051322: anaphase	1.41E-03
59	GO:0006661: phosphatidylinositol biosynthetic process	1.41E-03
60	GO:0006109: regulation of carbohydrate metabolic process	1.41E-03
61	GO:0031122: cytoplasmic microtubule organization	1.41E-03
62	GO:0006734: NADH metabolic process	1.41E-03
63	GO:0006662: glycerol ether metabolic process	1.63E-03
64	GO:0009107: lipoate biosynthetic process	1.80E-03
65	GO:0016123: xanthophyll biosynthetic process	1.80E-03
66	GO:0080110: sporopollenin biosynthetic process	1.80E-03
67	GO:0043097: pyrimidine nucleoside salvage	1.80E-03
68	GO:0032502: developmental process	2.14E-03
69	GO:0050665: hydrogen peroxide biosynthetic process	2.21E-03
70	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.21E-03
71	GO:0060918: auxin transport	2.21E-03
72	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.21E-03
73	GO:0006206: pyrimidine nucleobase metabolic process	2.21E-03
74	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.21E-03
75	GO:0009854: oxidative photosynthetic carbon pathway	2.66E-03
76	GO:0010019: chloroplast-nucleus signaling pathway	2.66E-03
77	GO:0000910: cytokinesis	2.73E-03
78	GO:0010103: stomatal complex morphogenesis	3.13E-03
79	GO:0009395: phospholipid catabolic process	3.13E-03
80	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.13E-03
81	GO:0070370: cellular heat acclimation	3.13E-03
82	GO:0009645: response to low light intensity stimulus	3.13E-03
83	GO:0006400: tRNA modification	3.13E-03
84	GO:0015995: chlorophyll biosynthetic process	3.40E-03
85	GO:0010492: maintenance of shoot apical meristem identity	3.63E-03
86	GO:0031540: regulation of anthocyanin biosynthetic process	3.63E-03
87	GO:0042255: ribosome assembly	3.63E-03
88	GO:0006353: DNA-templated transcription, termination	3.63E-03
89	GO:0009690: cytokinin metabolic process	3.63E-03
90	GO:0006605: protein targeting	3.63E-03
91	GO:0032508: DNA duplex unwinding	3.63E-03
92	GO:0018298: protein-chromophore linkage	3.76E-03
93	GO:0017004: cytochrome complex assembly	4.15E-03
94	GO:0001558: regulation of cell growth	4.15E-03
95	GO:0010204: defense response signaling pathway, resistance gene-independent	4.15E-03
96	GO:0032544: plastid translation	4.15E-03
97	GO:0000373: Group II intron splicing	4.70E-03
98	GO:0010206: photosystem II repair	4.70E-03
99	GO:0006754: ATP biosynthetic process	4.70E-03
100	GO:0034599: cellular response to oxidative stress	4.98E-03
101	GO:0009638: phototropism	5.27E-03
102	GO:0043069: negative regulation of programmed cell death	5.86E-03
103	GO:0019538: protein metabolic process	5.86E-03
104	GO:0009926: auxin polar transport	6.13E-03
105	GO:0042546: cell wall biogenesis	6.38E-03
106	GO:0018119: peptidyl-cysteine S-nitrosylation	6.48E-03
107	GO:0009684: indoleacetic acid biosynthetic process	6.48E-03
108	GO:0019684: photosynthesis, light reaction	6.48E-03
109	GO:0009089: lysine biosynthetic process via diaminopimelate	6.48E-03
110	GO:0009644: response to high light intensity	6.63E-03
111	GO:0008361: regulation of cell size	7.12E-03
112	GO:0045037: protein import into chloroplast stroma	7.12E-03
113	GO:0009767: photosynthetic electron transport chain	7.78E-03
114	GO:0009785: blue light signaling pathway	7.78E-03
115	GO:0006108: malate metabolic process	7.78E-03
116	GO:0010540: basipetal auxin transport	8.47E-03
117	GO:0010207: photosystem II assembly	8.47E-03
118	GO:0010020: chloroplast fission	8.47E-03
119	GO:0019253: reductive pentose-phosphate cycle	8.47E-03
120	GO:0006096: glycolytic process	9.79E-03
121	GO:0015979: photosynthesis	9.89E-03
122	GO:0006833: water transport	9.90E-03
123	GO:0009409: response to cold	1.04E-02
124	GO:0009944: polarity specification of adaxial/abaxial axis	1.06E-02
125	GO:0008299: isoprenoid biosynthetic process	1.14E-02
126	GO:0007017: microtubule-based process	1.14E-02
127	GO:0009768: photosynthesis, light harvesting in photosystem I	1.14E-02
128	GO:0010431: seed maturation	1.22E-02
129	GO:0006629: lipid metabolic process	1.37E-02
130	GO:0001944: vasculature development	1.38E-02
131	GO:0010584: pollen exine formation	1.47E-02
132	GO:0048443: stamen development	1.47E-02
133	GO:0019722: calcium-mediated signaling	1.47E-02
134	GO:0009306: protein secretion	1.47E-02
135	GO:0016117: carotenoid biosynthetic process	1.55E-02
136	GO:0008033: tRNA processing	1.64E-02
137	GO:0034220: ion transmembrane transport	1.64E-02
138	GO:0048868: pollen tube development	1.73E-02
139	GO:0009958: positive gravitropism	1.73E-02
140	GO:0045489: pectin biosynthetic process	1.73E-02
141	GO:0007018: microtubule-based movement	1.82E-02
142	GO:0006413: translational initiation	1.91E-02
143	GO:0019252: starch biosynthetic process	1.92E-02
144	GO:0008654: phospholipid biosynthetic process	1.92E-02
145	GO:0009791: post-embryonic development	1.92E-02
146	GO:0000302: response to reactive oxygen species	2.01E-02
147	GO:0010583: response to cyclopentenone	2.11E-02
148	GO:0016032: viral process	2.11E-02
149	GO:0009639: response to red or far red light	2.30E-02
150	GO:0007267: cell-cell signaling	2.41E-02
151	GO:0016126: sterol biosynthetic process	2.61E-02
152	GO:0010027: thylakoid membrane organization	2.61E-02
153	GO:0009627: systemic acquired resistance	2.83E-02
154	GO:0010411: xyloglucan metabolic process	2.94E-02
155	GO:0016311: dephosphorylation	3.05E-02
156	GO:0000160: phosphorelay signal transduction system	3.27E-02
157	GO:0009813: flavonoid biosynthetic process	3.27E-02
158	GO:0010218: response to far red light	3.38E-02
159	GO:0048527: lateral root development	3.50E-02
160	GO:0010119: regulation of stomatal movement	3.50E-02
161	GO:0006810: transport	3.69E-02
162	GO:0006099: tricarboxylic acid cycle	3.86E-02
163	GO:0005975: carbohydrate metabolic process	3.87E-02
164	GO:0046777: protein autophosphorylation	4.19E-02
165	GO:0006631: fatty acid metabolic process	4.22E-02
166	GO:0010114: response to red light	4.47E-02
167	GO:0009640: photomorphogenesis	4.47E-02
168	GO:0055114: oxidation-reduction process	4.59E-02
169	GO:0045454: cell redox homeostasis	4.68E-02
170	GO:0009636: response to toxic substance	4.86E-02
171	GO:0009965: leaf morphogenesis	4.86E-02
172	GO:0006855: drug transmembrane transport	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
7	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
8	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
9	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
10	GO:0050613: delta14-sterol reductase activity	0.00E+00
11	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
12	GO:0008974: phosphoribulokinase activity	0.00E+00
13	GO:0001053: plastid sigma factor activity	3.05E-05
14	GO:0016987: sigma factor activity	3.05E-05
15	GO:0004328: formamidase activity	2.04E-04
16	GO:0046906: tetrapyrrole binding	2.04E-04
17	GO:0005227: calcium activated cation channel activity	2.04E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	2.04E-04
19	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	2.04E-04
20	GO:0009496: plastoquinol--plastocyanin reductase activity	2.04E-04
21	GO:0008568: microtubule-severing ATPase activity	2.04E-04
22	GO:0008746: NAD(P)+ transhydrogenase activity	2.04E-04
23	GO:0010291: carotene beta-ring hydroxylase activity	4.57E-04
24	GO:0080045: quercetin 3'-O-glucosyltransferase activity	4.57E-04
25	GO:0019156: isoamylase activity	4.57E-04
26	GO:0004802: transketolase activity	4.57E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.57E-04
28	GO:0048531: beta-1,3-galactosyltransferase activity	4.57E-04
29	GO:0008728: GTP diphosphokinase activity	4.57E-04
30	GO:0070402: NADPH binding	7.44E-04
31	GO:0016992: lipoate synthase activity	7.44E-04
32	GO:0009882: blue light photoreceptor activity	1.06E-03
33	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.06E-03
34	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.06E-03
35	GO:0048027: mRNA 5'-UTR binding	1.06E-03
36	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.06E-03
37	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.06E-03
38	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.06E-03
39	GO:0047134: protein-disulfide reductase activity	1.40E-03
40	GO:0008891: glycolate oxidase activity	1.41E-03
41	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.41E-03
42	GO:0080032: methyl jasmonate esterase activity	1.41E-03
43	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.41E-03
44	GO:0019199: transmembrane receptor protein kinase activity	1.41E-03
45	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.41E-03
46	GO:0042277: peptide binding	1.41E-03
47	GO:0004791: thioredoxin-disulfide reductase activity	1.75E-03
48	GO:0010181: FMN binding	1.75E-03
49	GO:0008374: O-acyltransferase activity	1.80E-03
50	GO:0004040: amidase activity	1.80E-03
51	GO:0016615: malate dehydrogenase activity	2.21E-03
52	GO:0080046: quercetin 4'-O-glucosyltransferase activity	2.21E-03
53	GO:0080030: methyl indole-3-acetate esterase activity	2.21E-03
54	GO:0004556: alpha-amylase activity	2.21E-03
55	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.28E-03
56	GO:0004849: uridine kinase activity	2.66E-03
57	GO:0030060: L-malate dehydrogenase activity	2.66E-03
58	GO:0005261: cation channel activity	2.66E-03
59	GO:0016491: oxidoreductase activity	2.95E-03
60	GO:0019899: enzyme binding	3.13E-03
61	GO:0008312: 7S RNA binding	3.63E-03
62	GO:0043022: ribosome binding	3.63E-03
63	GO:0005525: GTP binding	4.26E-03
64	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	4.70E-03
65	GO:0003993: acid phosphatase activity	4.98E-03
66	GO:0030955: potassium ion binding	5.27E-03
67	GO:0004743: pyruvate kinase activity	5.27E-03
68	GO:0008047: enzyme activator activity	5.86E-03
69	GO:0016887: ATPase activity	5.92E-03
70	GO:0016788: hydrolase activity, acting on ester bonds	6.50E-03
71	GO:0003824: catalytic activity	7.21E-03
72	GO:0004089: carbonate dehydratase activity	7.78E-03
73	GO:0031072: heat shock protein binding	7.78E-03
74	GO:0000155: phosphorelay sensor kinase activity	7.78E-03
75	GO:0004565: beta-galactosidase activity	7.78E-03
76	GO:0010329: auxin efflux transmembrane transporter activity	7.78E-03
77	GO:0008081: phosphoric diester hydrolase activity	7.78E-03
78	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.27E-03
79	GO:0031409: pigment binding	9.90E-03
80	GO:0004857: enzyme inhibitor activity	1.06E-02
81	GO:0016874: ligase activity	1.11E-02
82	GO:0015035: protein disulfide oxidoreductase activity	1.22E-02
83	GO:0003729: mRNA binding	1.22E-02
84	GO:0003924: GTPase activity	1.37E-02
85	GO:0003727: single-stranded RNA binding	1.47E-02
86	GO:0008080: N-acetyltransferase activity	1.73E-02
87	GO:0016853: isomerase activity	1.82E-02
88	GO:0050662: coenzyme binding	1.82E-02
89	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.01E-02
90	GO:0048038: quinone binding	2.01E-02
91	GO:0008017: microtubule binding	2.14E-02
92	GO:0005200: structural constituent of cytoskeleton	2.41E-02
93	GO:0042802: identical protein binding	2.60E-02
94	GO:0015250: water channel activity	2.61E-02
95	GO:0016168: chlorophyll binding	2.72E-02
96	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.94E-02
97	GO:0008236: serine-type peptidase activity	3.05E-02
98	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.16E-02
99	GO:0005096: GTPase activator activity	3.27E-02
100	GO:0015238: drug transmembrane transporter activity	3.27E-02
101	GO:0030145: manganese ion binding	3.50E-02
102	GO:0004364: glutathione transferase activity	4.35E-02
103	GO:0035091: phosphatidylinositol binding	4.73E-02
104	GO:0004871: signal transducer activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.00E-21
3	GO:0009535: chloroplast thylakoid membrane	3.09E-11
4	GO:0009570: chloroplast stroma	4.97E-07
5	GO:0080085: signal recognition particle, chloroplast targeting	1.97E-06
6	GO:0009941: chloroplast envelope	2.28E-06
7	GO:0009782: photosystem I antenna complex	2.04E-04
8	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.11E-04
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.57E-04
10	GO:0009574: preprophase band	5.42E-04
11	GO:0009579: thylakoid	6.05E-04
12	GO:0015630: microtubule cytoskeleton	1.06E-03
13	GO:0009898: cytoplasmic side of plasma membrane	1.41E-03
14	GO:0031969: chloroplast membrane	1.68E-03
15	GO:0009512: cytochrome b6f complex	1.80E-03
16	GO:0009543: chloroplast thylakoid lumen	2.42E-03
17	GO:0005623: cell	2.51E-03
18	GO:0010319: stromule	2.58E-03
19	GO:0009986: cell surface	3.13E-03
20	GO:0042644: chloroplast nucleoid	4.70E-03
21	GO:0046658: anchored component of plasma membrane	5.21E-03
22	GO:0031977: thylakoid lumen	5.66E-03
23	GO:0032040: small-subunit processome	7.12E-03
24	GO:0048046: apoplast	7.75E-03
25	GO:0005874: microtubule	7.99E-03
26	GO:0030076: light-harvesting complex	9.17E-03
27	GO:0030176: integral component of endoplasmic reticulum membrane	9.17E-03
28	GO:0009654: photosystem II oxygen evolving complex	1.14E-02
29	GO:0042651: thylakoid membrane	1.14E-02
30	GO:0005871: kinesin complex	1.55E-02
31	GO:0009524: phragmoplast	1.56E-02
32	GO:0005773: vacuole	1.73E-02
33	GO:0009522: photosystem I	1.82E-02
34	GO:0019898: extrinsic component of membrane	1.92E-02
35	GO:0009504: cell plate	1.92E-02
36	GO:0005694: chromosome	2.11E-02
37	GO:0016021: integral component of membrane	2.33E-02
38	GO:0030529: intracellular ribonucleoprotein complex	2.61E-02
39	GO:0009707: chloroplast outer membrane	3.16E-02
40	GO:0009534: chloroplast thylakoid	3.57E-02
41	GO:0005819: spindle	3.98E-02
42	GO:0031225: anchored component of membrane	4.88E-02