co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G49630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
2	GO:0046486: glycerolipid metabolic process	0.00E+00
3	GO:0009451: RNA modification	1.59E-04
4	GO:0019478: D-amino acid catabolic process	2.46E-04
5	GO:0010070: zygote asymmetric cell division	2.46E-04
6	GO:0090063: positive regulation of microtubule nucleation	2.46E-04
7	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	2.46E-04
8	GO:0007186: G-protein coupled receptor signaling pathway	2.78E-04
9	GO:0000373: Group II intron splicing	3.36E-04
10	GO:0080175: phragmoplast microtubule organization	5.44E-04
11	GO:0006650: glycerophospholipid metabolic process	5.44E-04
12	GO:0009220: pyrimidine ribonucleotide biosynthetic process	5.44E-04
13	GO:0033566: gamma-tubulin complex localization	5.44E-04
14	GO:0010069: zygote asymmetric cytokinesis in embryo sac	5.44E-04
15	GO:0006518: peptide metabolic process	8.83E-04
16	GO:0042780: tRNA 3'-end processing	8.83E-04
17	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	8.83E-04
18	GO:0034090: maintenance of meiotic sister chromatid cohesion	8.83E-04
19	GO:0046168: glycerol-3-phosphate catabolic process	8.83E-04
20	GO:1902290: positive regulation of defense response to oomycetes	1.26E-03
21	GO:0045017: glycerolipid biosynthetic process	1.26E-03
22	GO:0006072: glycerol-3-phosphate metabolic process	1.26E-03
23	GO:0006364: rRNA processing	1.63E-03
24	GO:0044205: 'de novo' UMP biosynthetic process	1.68E-03
25	GO:0009956: radial pattern formation	1.68E-03
26	GO:0016558: protein import into peroxisome matrix	2.15E-03
27	GO:0051225: spindle assembly	2.15E-03
28	GO:0009616: virus induced gene silencing	2.15E-03
29	GO:0009696: salicylic acid metabolic process	2.15E-03
30	GO:0008654: phospholipid biosynthetic process	2.44E-03
31	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.65E-03
32	GO:0006655: phosphatidylglycerol biosynthetic process	2.65E-03
33	GO:0035194: posttranscriptional gene silencing by RNA	2.65E-03
34	GO:0009416: response to light stimulus	2.85E-03
35	GO:0048444: floral organ morphogenesis	3.18E-03
36	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.18E-03
37	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.75E-03
38	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.75E-03
39	GO:0006401: RNA catabolic process	3.75E-03
40	GO:0009610: response to symbiotic fungus	3.75E-03
41	GO:0007050: cell cycle arrest	3.75E-03
42	GO:0009627: systemic acquired resistance	4.20E-03
43	GO:0048564: photosystem I assembly	4.35E-03
44	GO:0045292: mRNA cis splicing, via spliceosome	4.35E-03
45	GO:0032544: plastid translation	4.98E-03
46	GO:0009657: plastid organization	4.98E-03
47	GO:0009832: plant-type cell wall biogenesis	5.15E-03
48	GO:0008202: steroid metabolic process	6.33E-03
49	GO:1900426: positive regulation of defense response to bacterium	6.33E-03
50	GO:1900865: chloroplast RNA modification	6.33E-03
51	GO:0048829: root cap development	7.06E-03
52	GO:0010192: mucilage biosynthetic process	7.06E-03
53	GO:0009089: lysine biosynthetic process via diaminopimelate	7.80E-03
54	GO:1903507: negative regulation of nucleic acid-templated transcription	7.80E-03
55	GO:0048229: gametophyte development	7.80E-03
56	GO:0045037: protein import into chloroplast stroma	8.58E-03
57	GO:0016024: CDP-diacylglycerol biosynthetic process	8.58E-03
58	GO:0009658: chloroplast organization	8.93E-03
59	GO:0009718: anthocyanin-containing compound biosynthetic process	9.38E-03
60	GO:0031347: regulation of defense response	9.71E-03
61	GO:0009933: meristem structural organization	1.02E-02
62	GO:0010540: basipetal auxin transport	1.02E-02
63	GO:0009934: regulation of meristem structural organization	1.02E-02
64	GO:0010020: chloroplast fission	1.02E-02
65	GO:0009825: multidimensional cell growth	1.11E-02
66	GO:0080188: RNA-directed DNA methylation	1.11E-02
67	GO:0009833: plant-type primary cell wall biogenesis	1.20E-02
68	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.23E-02
69	GO:0006468: protein phosphorylation	1.27E-02
70	GO:0007010: cytoskeleton organization	1.29E-02
71	GO:0080147: root hair cell development	1.29E-02
72	GO:0009116: nucleoside metabolic process	1.29E-02
73	GO:0051302: regulation of cell division	1.38E-02
74	GO:0006874: cellular calcium ion homeostasis	1.38E-02
75	GO:0003333: amino acid transmembrane transport	1.47E-02
76	GO:0006306: DNA methylation	1.47E-02
77	GO:0016226: iron-sulfur cluster assembly	1.57E-02
78	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.57E-02
79	GO:0009686: gibberellin biosynthetic process	1.67E-02
80	GO:0042127: regulation of cell proliferation	1.77E-02
81	GO:0006284: base-excision repair	1.77E-02
82	GO:0000271: polysaccharide biosynthetic process	1.99E-02
83	GO:0010051: xylem and phloem pattern formation	1.99E-02
84	GO:0048653: anther development	1.99E-02
85	GO:0006397: mRNA processing	2.03E-02
86	GO:0010305: leaf vascular tissue pattern formation	2.09E-02
87	GO:0009958: positive gravitropism	2.09E-02
88	GO:0045489: pectin biosynthetic process	2.09E-02
89	GO:0002229: defense response to oomycetes	2.43E-02
90	GO:0006635: fatty acid beta-oxidation	2.43E-02
91	GO:0080156: mitochondrial mRNA modification	2.43E-02
92	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.43E-02
93	GO:0016036: cellular response to phosphate starvation	2.49E-02
94	GO:0010583: response to cyclopentenone	2.55E-02
95	GO:0031047: gene silencing by RNA	2.55E-02
96	GO:0009639: response to red or far red light	2.79E-02
97	GO:0071555: cell wall organization	3.12E-02
98	GO:0006974: cellular response to DNA damage stimulus	3.42E-02
99	GO:0010411: xyloglucan metabolic process	3.55E-02
100	GO:0030244: cellulose biosynthetic process	3.82E-02
101	GO:0009817: defense response to fungus, incompatible interaction	3.82E-02
102	GO:0000160: phosphorelay signal transduction system	3.96E-02
103	GO:0009793: embryo development ending in seed dormancy	4.04E-02
104	GO:0006811: ion transport	4.10E-02
105	GO:0006865: amino acid transport	4.38E-02
106	GO:0016051: carbohydrate biosynthetic process	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity	0.00E+00
2	GO:0098519: nucleotide phosphatase activity, acting on free nucleotides	0.00E+00
3	GO:0004588: orotate phosphoribosyltransferase activity	0.00E+00
4	GO:0004590: orotidine-5'-phosphate decarboxylase activity	0.00E+00
5	GO:0008859: exoribonuclease II activity	0.00E+00
6	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	2.46E-04
7	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	2.46E-04
8	GO:0008836: diaminopimelate decarboxylase activity	2.46E-04
9	GO:0004047: aminomethyltransferase activity	5.44E-04
10	GO:0008805: carbon-monoxide oxygenase activity	5.44E-04
11	GO:0004871: signal transducer activity	7.86E-04
12	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.83E-04
13	GO:0016707: gibberellin 3-beta-dioxygenase activity	8.83E-04
14	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	8.83E-04
15	GO:0042781: 3'-tRNA processing endoribonuclease activity	8.83E-04
16	GO:0004519: endonuclease activity	1.20E-03
17	GO:0080031: methyl salicylate esterase activity	1.26E-03
18	GO:0004930: G-protein coupled receptor activity	1.68E-03
19	GO:0010328: auxin influx transmembrane transporter activity	1.68E-03
20	GO:0008725: DNA-3-methyladenine glycosylase activity	2.15E-03
21	GO:0004462: lactoylglutathione lyase activity	2.65E-03
22	GO:0004605: phosphatidate cytidylyltransferase activity	2.65E-03
23	GO:0080030: methyl indole-3-acetate esterase activity	2.65E-03
24	GO:0019899: enzyme binding	3.75E-03
25	GO:0016301: kinase activity	4.27E-03
26	GO:0008142: oxysterol binding	4.98E-03
27	GO:0003724: RNA helicase activity	4.98E-03
28	GO:0004712: protein serine/threonine/tyrosine kinase activity	6.78E-03
29	GO:0015020: glucuronosyltransferase activity	7.06E-03
30	GO:0004713: protein tyrosine kinase activity	7.06E-03
31	GO:0008327: methyl-CpG binding	7.80E-03
32	GO:0043621: protein self-association	8.67E-03
33	GO:0009982: pseudouridine synthase activity	9.38E-03
34	GO:0000175: 3'-5'-exoribonuclease activity	9.38E-03
35	GO:0005217: intracellular ligand-gated ion channel activity	1.11E-02
36	GO:0004970: ionotropic glutamate receptor activity	1.11E-02
37	GO:0003714: transcription corepressor activity	1.29E-02
38	GO:0008134: transcription factor binding	1.29E-02
39	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.41E-02
40	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.41E-02
41	GO:0004540: ribonuclease activity	1.47E-02
42	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.57E-02
43	GO:0016760: cellulose synthase (UDP-forming) activity	1.67E-02
44	GO:0004386: helicase activity	1.69E-02
45	GO:0016758: transferase activity, transferring hexosyl groups	1.89E-02
46	GO:0008080: N-acetyltransferase activity	2.09E-02
47	GO:0005524: ATP binding	2.13E-02
48	GO:0019901: protein kinase binding	2.32E-02
49	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.43E-02
50	GO:0004674: protein serine/threonine kinase activity	2.59E-02
51	GO:0000156: phosphorelay response regulator activity	2.67E-02
52	GO:0016759: cellulose synthase activity	2.79E-02
53	GO:0008017: microtubule binding	2.80E-02
54	GO:0003723: RNA binding	2.96E-02
55	GO:0008194: UDP-glycosyltransferase activity	2.99E-02
56	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.55E-02
57	GO:0004806: triglyceride lipase activity	3.55E-02
58	GO:0000166: nucleotide binding	3.93E-02
59	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.10E-02
60	GO:0004222: metalloendopeptidase activity	4.10E-02
61	GO:0016788: hydrolase activity, acting on ester bonds	4.21E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0010370: perinucleolar chromocenter	2.46E-04
3	GO:0070652: HAUS complex	8.83E-04
4	GO:0005819: spindle	9.15E-04
5	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.26E-03
6	GO:0000930: gamma-tubulin complex	1.68E-03
7	GO:0000178: exosome (RNase complex)	2.15E-03
8	GO:0010005: cortical microtubule, transverse to long axis	3.18E-03
9	GO:0043231: intracellular membrane-bounded organelle	5.30E-03
10	GO:0042644: chloroplast nucleoid	5.65E-03
11	GO:0000922: spindle pole	5.65E-03
12	GO:0005720: nuclear heterochromatin	5.65E-03
13	GO:0009507: chloroplast	6.64E-03
14	GO:0055028: cortical microtubule	7.06E-03
15	GO:0005938: cell cortex	9.38E-03
16	GO:0016602: CCAAT-binding factor complex	9.38E-03
17	GO:0000419: DNA-directed RNA polymerase V complex	1.20E-02
18	GO:0005834: heterotrimeric G-protein complex	1.37E-02
19	GO:0009524: phragmoplast	2.04E-02
20	GO:0016592: mediator complex	2.55E-02
21	GO:0071944: cell periphery	2.67E-02
22	GO:0010319: stromule	2.91E-02
23	GO:0000932: P-body	3.16E-02
24	GO:0009707: chloroplast outer membrane	3.82E-02
25	GO:0009570: chloroplast stroma	4.58E-02
26	GO:0005874: microtubule	4.93E-02