co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G49430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
3	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
4	GO:0090391: granum assembly	2.44E-06
5	GO:0009773: photosynthetic electron transport in photosystem I	3.48E-06
6	GO:0006636: unsaturated fatty acid biosynthetic process	1.04E-05
7	GO:0010196: nonphotochemical quenching	5.19E-05
8	GO:0015979: photosynthesis	7.73E-05
9	GO:0006835: dicarboxylic acid transport	1.12E-04
10	GO:0000023: maltose metabolic process	1.12E-04
11	GO:0000025: maltose catabolic process	1.12E-04
12	GO:0071277: cellular response to calcium ion	1.12E-04
13	GO:0015671: oxygen transport	1.12E-04
14	GO:0015995: chlorophyll biosynthetic process	1.22E-04
15	GO:0006094: gluconeogenesis	2.36E-04
16	GO:0005976: polysaccharide metabolic process	2.61E-04
17	GO:0055114: oxidation-reduction process	2.69E-04
18	GO:0006081: cellular aldehyde metabolic process	4.32E-04
19	GO:0006518: peptide metabolic process	4.32E-04
20	GO:0006096: glycolytic process	5.10E-04
21	GO:0071484: cellular response to light intensity	6.19E-04
22	GO:0006869: lipid transport	7.16E-04
23	GO:0015994: chlorophyll metabolic process	8.23E-04
24	GO:0006021: inositol biosynthetic process	8.23E-04
25	GO:0010117: photoprotection	1.04E-03
26	GO:0009972: cytidine deamination	1.27E-03
27	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.27E-03
28	GO:0010190: cytochrome b6f complex assembly	1.27E-03
29	GO:0010027: thylakoid membrane organization	1.28E-03
30	GO:0010189: vitamin E biosynthetic process	1.52E-03
31	GO:0009395: phospholipid catabolic process	1.78E-03
32	GO:0008272: sulfate transport	1.78E-03
33	GO:1900057: positive regulation of leaf senescence	1.78E-03
34	GO:0009704: de-etiolation	2.06E-03
35	GO:0019827: stem cell population maintenance	2.06E-03
36	GO:0008610: lipid biosynthetic process	2.06E-03
37	GO:0009642: response to light intensity	2.06E-03
38	GO:0030091: protein repair	2.06E-03
39	GO:0006783: heme biosynthetic process	2.66E-03
40	GO:0006098: pentose-phosphate shunt	2.66E-03
41	GO:0019432: triglyceride biosynthetic process	2.66E-03
42	GO:0010206: photosystem II repair	2.66E-03
43	GO:0090333: regulation of stomatal closure	2.66E-03
44	GO:0080167: response to karrikin	2.88E-03
45	GO:0009644: response to high light intensity	2.89E-03
46	GO:0010205: photoinhibition	2.97E-03
47	GO:0006779: porphyrin-containing compound biosynthetic process	2.97E-03
48	GO:0009641: shade avoidance	3.30E-03
49	GO:0006782: protoporphyrinogen IX biosynthetic process	3.30E-03
50	GO:0000038: very long-chain fatty acid metabolic process	3.65E-03
51	GO:0043085: positive regulation of catalytic activity	3.65E-03
52	GO:0005983: starch catabolic process	4.00E-03
53	GO:0006006: glucose metabolic process	4.36E-03
54	GO:0009725: response to hormone	4.36E-03
55	GO:0032259: methylation	4.46E-03
56	GO:0010223: secondary shoot formation	4.74E-03
57	GO:0009266: response to temperature stimulus	4.74E-03
58	GO:0010143: cutin biosynthetic process	4.74E-03
59	GO:0019253: reductive pentose-phosphate cycle	4.74E-03
60	GO:0010207: photosystem II assembly	4.74E-03
61	GO:0009768: photosynthesis, light harvesting in photosystem I	6.35E-03
62	GO:0007017: microtubule-based process	6.35E-03
63	GO:0016998: cell wall macromolecule catabolic process	6.78E-03
64	GO:0031408: oxylipin biosynthetic process	6.78E-03
65	GO:0030433: ubiquitin-dependent ERAD pathway	7.22E-03
66	GO:0006633: fatty acid biosynthetic process	8.01E-03
67	GO:0016117: carotenoid biosynthetic process	8.60E-03
68	GO:0070417: cellular response to cold	8.60E-03
69	GO:0010118: stomatal movement	9.08E-03
70	GO:0042335: cuticle development	9.08E-03
71	GO:0006662: glycerol ether metabolic process	9.57E-03
72	GO:0048868: pollen tube development	9.57E-03
73	GO:0019252: starch biosynthetic process	1.06E-02
74	GO:0008654: phospholipid biosynthetic process	1.06E-02
75	GO:0051607: defense response to virus	1.38E-02
76	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.50E-02
77	GO:0010411: xyloglucan metabolic process	1.62E-02
78	GO:0016311: dephosphorylation	1.68E-02
79	GO:0018298: protein-chromophore linkage	1.74E-02
80	GO:0000160: phosphorelay signal transduction system	1.80E-02
81	GO:0010218: response to far red light	1.86E-02
82	GO:0009631: cold acclimation	1.93E-02
83	GO:0045454: cell redox homeostasis	2.03E-02
84	GO:0009637: response to blue light	2.06E-02
85	GO:0034599: cellular response to oxidative stress	2.12E-02
86	GO:0006839: mitochondrial transport	2.25E-02
87	GO:0006631: fatty acid metabolic process	2.32E-02
88	GO:0042542: response to hydrogen peroxide	2.39E-02
89	GO:0016042: lipid catabolic process	2.43E-02
90	GO:0010114: response to red light	2.46E-02
91	GO:0009744: response to sucrose	2.46E-02
92	GO:0051707: response to other organism	2.46E-02
93	GO:0042546: cell wall biogenesis	2.53E-02
94	GO:0000209: protein polyubiquitination	2.53E-02
95	GO:0006364: rRNA processing	3.04E-02
96	GO:0009736: cytokinin-activated signaling pathway	3.04E-02
97	GO:0006857: oligopeptide transport	3.20E-02
98	GO:0043086: negative regulation of catalytic activity	3.43E-02
99	GO:0009409: response to cold	3.47E-02
100	GO:0042545: cell wall modification	3.83E-02
101	GO:0009735: response to cytokinin	4.05E-02
102	GO:0009416: response to light stimulus	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
2	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
3	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
4	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
5	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
6	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
7	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
8	GO:0045550: geranylgeranyl reductase activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0004332: fructose-bisphosphate aldolase activity	2.72E-05
11	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.55E-05
12	GO:0005344: oxygen transporter activity	1.12E-04
13	GO:0035671: enone reductase activity	1.12E-04
14	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.12E-04
15	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	1.12E-04
16	GO:0004134: 4-alpha-glucanotransferase activity	1.12E-04
17	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.27E-04
18	GO:0004565: beta-galactosidase activity	2.36E-04
19	GO:0008883: glutamyl-tRNA reductase activity	2.61E-04
20	GO:0047746: chlorophyllase activity	2.61E-04
21	GO:0042389: omega-3 fatty acid desaturase activity	2.61E-04
22	GO:0010297: heteropolysaccharide binding	2.61E-04
23	GO:0008509: anion transmembrane transporter activity	2.61E-04
24	GO:0004512: inositol-3-phosphate synthase activity	2.61E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	2.61E-04
26	GO:0016630: protochlorophyllide reductase activity	2.61E-04
27	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	4.32E-04
28	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.32E-04
29	GO:0005310: dicarboxylic acid transmembrane transporter activity	4.32E-04
30	GO:0004373: glycogen (starch) synthase activity	4.32E-04
31	GO:0050734: hydroxycinnamoyltransferase activity	4.32E-04
32	GO:0017077: oxidative phosphorylation uncoupler activity	6.19E-04
33	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.19E-04
34	GO:0009011: starch synthase activity	8.23E-04
35	GO:0009922: fatty acid elongase activity	1.04E-03
36	GO:2001070: starch binding	1.27E-03
37	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.27E-03
38	GO:0008289: lipid binding	1.40E-03
39	GO:0004126: cytidine deaminase activity	1.52E-03
40	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.52E-03
41	GO:0004620: phospholipase activity	1.78E-03
42	GO:0015140: malate transmembrane transporter activity	1.78E-03
43	GO:0008168: methyltransferase activity	2.09E-03
44	GO:0003993: acid phosphatase activity	2.18E-03
45	GO:0016788: hydrolase activity, acting on ester bonds	2.24E-03
46	GO:0050661: NADP binding	2.37E-03
47	GO:0008047: enzyme activator activity	3.30E-03
48	GO:0015035: protein disulfide oxidoreductase activity	5.25E-03
49	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	5.52E-03
50	GO:0031409: pigment binding	5.52E-03
51	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	5.52E-03
52	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	5.52E-03
53	GO:0047134: protein-disulfide reductase activity	8.60E-03
54	GO:0004791: thioredoxin-disulfide reductase activity	1.01E-02
55	GO:0016853: isomerase activity	1.01E-02
56	GO:0004872: receptor activity	1.06E-02
57	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.11E-02
58	GO:0042802: identical protein binding	1.12E-02
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.22E-02
60	GO:0000156: phosphorelay response regulator activity	1.22E-02
61	GO:0005200: structural constituent of cytoskeleton	1.33E-02
62	GO:0016168: chlorophyll binding	1.50E-02
63	GO:0019825: oxygen binding	1.53E-02
64	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.62E-02
65	GO:0004222: metalloendopeptidase activity	1.86E-02
66	GO:0052689: carboxylic ester hydrolase activity	1.87E-02
67	GO:0009055: electron carrier activity	2.69E-02
68	GO:0051287: NAD binding	2.82E-02
69	GO:0031625: ubiquitin protein ligase binding	3.27E-02
70	GO:0045330: aspartyl esterase activity	3.27E-02
71	GO:0030599: pectinesterase activity	3.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009534: chloroplast thylakoid	1.98E-20
3	GO:0009507: chloroplast	2.16E-15
4	GO:0009535: chloroplast thylakoid membrane	5.26E-13
5	GO:0009941: chloroplast envelope	1.27E-09
6	GO:0009579: thylakoid	3.72E-09
7	GO:0031969: chloroplast membrane	5.78E-05
8	GO:0009569: chloroplast starch grain	2.61E-04
9	GO:0031357: integral component of chloroplast inner membrane	2.61E-04
10	GO:0048046: apoplast	3.45E-04
11	GO:0031977: thylakoid lumen	2.47E-03
12	GO:0045298: tubulin complex	2.66E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.66E-03
14	GO:0008180: COP9 signalosome	2.66E-03
15	GO:0005618: cell wall	4.84E-03
16	GO:0030076: light-harvesting complex	5.13E-03
17	GO:0043234: protein complex	5.52E-03
18	GO:0010287: plastoglobule	6.04E-03
19	GO:0009654: photosystem II oxygen evolving complex	6.35E-03
20	GO:0009543: chloroplast thylakoid lumen	6.38E-03
21	GO:0016021: integral component of membrane	8.39E-03
22	GO:0016020: membrane	9.51E-03
23	GO:0009522: photosystem I	1.01E-02
24	GO:0019898: extrinsic component of membrane	1.06E-02
25	GO:0010319: stromule	1.33E-02
26	GO:0019005: SCF ubiquitin ligase complex	1.74E-02
27	GO:0009707: chloroplast outer membrane	1.74E-02
28	GO:0000502: proteasome complex	3.04E-02
29	GO:0009505: plant-type cell wall	3.16E-02
30	GO:0009570: chloroplast stroma	3.58E-02
31	GO:0012505: endomembrane system	3.83E-02
32	GO:0005783: endoplasmic reticulum	3.97E-02
33	GO:0005623: cell	4.68E-02