co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G48350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009069: serine family amino acid metabolic process	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0070178: D-serine metabolic process	0.00E+00
4	GO:0006412: translation	6.54E-12
5	GO:0032544: plastid translation	9.03E-10
6	GO:0042254: ribosome biogenesis	2.01E-07
7	GO:0006633: fatty acid biosynthetic process	3.09E-05
8	GO:0015995: chlorophyll biosynthetic process	3.60E-05
9	GO:0010207: photosystem II assembly	1.14E-04
10	GO:0010270: photosystem II oxygen evolving complex assembly	1.48E-04
11	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.48E-04
12	GO:2001295: malonyl-CoA biosynthetic process	2.51E-04
13	GO:0010731: protein glutathionylation	3.65E-04
14	GO:0006986: response to unfolded protein	3.65E-04
15	GO:0071484: cellular response to light intensity	3.65E-04
16	GO:0051085: chaperone mediated protein folding requiring cofactor	3.65E-04
17	GO:0006241: CTP biosynthetic process	3.65E-04
18	GO:0006165: nucleoside diphosphate phosphorylation	3.65E-04
19	GO:0006228: UTP biosynthetic process	3.65E-04
20	GO:0019464: glycine decarboxylation via glycine cleavage system	4.88E-04
21	GO:0006183: GTP biosynthetic process	4.88E-04
22	GO:0009735: response to cytokinin	5.18E-04
23	GO:0016120: carotene biosynthetic process	6.19E-04
24	GO:0010190: cytochrome b6f complex assembly	7.57E-04
25	GO:0006014: D-ribose metabolic process	7.57E-04
26	GO:0006563: L-serine metabolic process	7.57E-04
27	GO:0006751: glutathione catabolic process	7.57E-04
28	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	7.57E-04
29	GO:0006828: manganese ion transport	7.57E-04
30	GO:0009817: defense response to fungus, incompatible interaction	7.65E-04
31	GO:0009813: flavonoid biosynthetic process	8.02E-04
32	GO:0006631: fatty acid metabolic process	1.13E-03
33	GO:0010206: photosystem II repair	1.55E-03
34	GO:0006783: heme biosynthetic process	1.55E-03
35	GO:0006782: protoporphyrinogen IX biosynthetic process	1.92E-03
36	GO:0006816: calcium ion transport	2.12E-03
37	GO:0009773: photosynthetic electron transport in photosystem I	2.12E-03
38	GO:0006415: translational termination	2.12E-03
39	GO:0009740: gibberellic acid mediated signaling pathway	2.16E-03
40	GO:0051017: actin filament bundle assembly	3.42E-03
41	GO:0000027: ribosomal large subunit assembly	3.42E-03
42	GO:0009739: response to gibberellin	4.39E-03
43	GO:0009411: response to UV	4.40E-03
44	GO:0006012: galactose metabolic process	4.40E-03
45	GO:0006457: protein folding	4.83E-03
46	GO:0000413: protein peptidyl-prolyl isomerization	5.19E-03
47	GO:0048544: recognition of pollen	5.74E-03
48	GO:0019252: starch biosynthetic process	6.03E-03
49	GO:0009658: chloroplast organization	6.06E-03
50	GO:0010027: thylakoid membrane organization	8.16E-03
51	GO:0015979: photosynthesis	8.58E-03
52	GO:0016051: carbohydrate biosynthetic process	1.16E-02
53	GO:0009853: photorespiration	1.16E-02
54	GO:0042542: response to hydrogen peroxide	1.35E-02
55	GO:0009585: red, far-red light phototransduction	1.71E-02
56	GO:0009790: embryo development	2.88E-02
57	GO:0040008: regulation of growth	3.14E-02

Rank	GO Term	Adjusted P value
1	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
5	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0030378: serine racemase activity	0.00E+00
9	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
10	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
11	GO:0019843: rRNA binding	1.44E-17
12	GO:0003735: structural constituent of ribosome	1.75E-13
13	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.65E-08
14	GO:0005504: fatty acid binding	8.32E-07
15	GO:0005528: FK506 binding	3.12E-06
16	GO:0045430: chalcone isomerase activity	3.86E-06
17	GO:0004853: uroporphyrinogen decarboxylase activity	6.10E-05
18	GO:0016630: protochlorophyllide reductase activity	1.48E-04
19	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	1.48E-04
20	GO:0003839: gamma-glutamylcyclotransferase activity	1.48E-04
21	GO:0004075: biotin carboxylase activity	2.51E-04
22	GO:0045174: glutathione dehydrogenase (ascorbate) activity	2.51E-04
23	GO:0004148: dihydrolipoyl dehydrogenase activity	2.51E-04
24	GO:0016149: translation release factor activity, codon specific	3.65E-04
25	GO:0004550: nucleoside diphosphate kinase activity	3.65E-04
26	GO:0043023: ribosomal large subunit binding	3.65E-04
27	GO:0004375: glycine dehydrogenase (decarboxylating) activity	3.65E-04
28	GO:0003959: NADPH dehydrogenase activity	6.19E-04
29	GO:0003989: acetyl-CoA carboxylase activity	6.19E-04
30	GO:0004747: ribokinase activity	9.01E-04
31	GO:0004034: aldose 1-epimerase activity	1.21E-03
32	GO:0008865: fructokinase activity	1.21E-03
33	GO:0003747: translation release factor activity	1.55E-03
34	GO:0005384: manganese ion transmembrane transporter activity	1.73E-03
35	GO:0051082: unfolded protein binding	2.29E-03
36	GO:0015095: magnesium ion transmembrane transporter activity	2.52E-03
37	GO:0031072: heat shock protein binding	2.52E-03
38	GO:0008266: poly(U) RNA binding	2.74E-03
39	GO:0051087: chaperone binding	3.65E-03
40	GO:0043424: protein histidine kinase binding	3.65E-03
41	GO:0005507: copper ion binding	5.45E-03
42	GO:0016853: isomerase activity	5.74E-03
43	GO:0051015: actin filament binding	6.91E-03
44	GO:0008237: metallopeptidase activity	7.52E-03
45	GO:0004222: metalloendopeptidase activity	1.05E-02
46	GO:0009055: electron carrier activity	1.19E-02
47	GO:0016491: oxidoreductase activity	1.21E-02
48	GO:0004364: glutathione transferase activity	1.35E-02
49	GO:0051537: 2 iron, 2 sulfur cluster binding	1.47E-02
50	GO:0030246: carbohydrate binding	2.66E-02
51	GO:0030170: pyridoxal phosphate binding	2.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0005835: fatty acid synthase complex	0.00E+00
3	GO:0009507: chloroplast	5.47E-39
4	GO:0009570: chloroplast stroma	7.79E-29
5	GO:0009941: chloroplast envelope	5.07E-23
6	GO:0009535: chloroplast thylakoid membrane	9.07E-19
7	GO:0009579: thylakoid	4.49E-17
8	GO:0005840: ribosome	1.88E-12
9	GO:0009543: chloroplast thylakoid lumen	3.52E-10
10	GO:0009534: chloroplast thylakoid	1.65E-09
11	GO:0031977: thylakoid lumen	5.03E-08
12	GO:0009547: plastid ribosome	6.10E-05
13	GO:0031969: chloroplast membrane	1.24E-04
14	GO:0005960: glycine cleavage complex	3.65E-04
15	GO:0009536: plastid	4.73E-04
16	GO:0015934: large ribosomal subunit	8.77E-04
17	GO:0009533: chloroplast stromal thylakoid	1.05E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.55E-03
19	GO:0000311: plastid large ribosomal subunit	2.32E-03
20	GO:0009508: plastid chromosome	2.52E-03
21	GO:0000312: plastid small ribosomal subunit	2.74E-03
22	GO:0030095: chloroplast photosystem II	2.74E-03
23	GO:0022626: cytosolic ribosome	3.29E-03
24	GO:0009654: photosystem II oxygen evolving complex	3.65E-03
25	GO:0015629: actin cytoskeleton	4.40E-03
26	GO:0019898: extrinsic component of membrane	6.03E-03
27	GO:0009295: nucleoid	7.52E-03
28	GO:0022625: cytosolic large ribosomal subunit	7.91E-03
29	GO:0009707: chloroplast outer membrane	9.82E-03
30	GO:0005856: cytoskeleton	1.51E-02
31	GO:0009706: chloroplast inner membrane	2.20E-02
32	GO:0016020: membrane	2.69E-02
33	GO:0005759: mitochondrial matrix	3.04E-02
34	GO:0046658: anchored component of plasma membrane	3.97E-02
35	GO:0022627: cytosolic small ribosomal subunit	3.97E-02