co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G45474

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0098586: cellular response to virus	0.00E+00
2	GO:0009715: chalcone biosynthetic process	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0009904: chloroplast accumulation movement	9.69E-06
5	GO:0009903: chloroplast avoidance movement	2.12E-05
6	GO:0010362: negative regulation of anion channel activity by blue light	7.75E-05
7	GO:0051775: response to redox state	7.75E-05
8	GO:0000481: maturation of 5S rRNA	7.75E-05
9	GO:0042371: vitamin K biosynthetic process	7.75E-05
10	GO:0071461: cellular response to redox state	7.75E-05
11	GO:0034337: RNA folding	7.75E-05
12	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.85E-04
13	GO:0046741: transport of virus in host, tissue to tissue	1.85E-04
14	GO:0009629: response to gravity	1.85E-04
15	GO:0080005: photosystem stoichiometry adjustment	1.85E-04
16	GO:0010042: response to manganese ion	1.85E-04
17	GO:0010155: regulation of proton transport	1.85E-04
18	GO:0000913: preprophase band assembly	3.11E-04
19	GO:0031022: nuclear migration along microfilament	3.11E-04
20	GO:0034220: ion transmembrane transport	4.24E-04
21	GO:0006107: oxaloacetate metabolic process	4.49E-04
22	GO:0080170: hydrogen peroxide transmembrane transport	4.49E-04
23	GO:0009226: nucleotide-sugar biosynthetic process	4.49E-04
24	GO:0010731: protein glutathionylation	4.49E-04
25	GO:0043572: plastid fission	4.49E-04
26	GO:2001141: regulation of RNA biosynthetic process	4.49E-04
27	GO:0030104: water homeostasis	5.98E-04
28	GO:0031122: cytoplasmic microtubule organization	5.98E-04
29	GO:0006734: NADH metabolic process	5.98E-04
30	GO:0015976: carbon utilization	5.98E-04
31	GO:0000278: mitotic cell cycle	7.57E-04
32	GO:0010190: cytochrome b6f complex assembly	9.24E-04
33	GO:0050665: hydrogen peroxide biosynthetic process	9.24E-04
34	GO:0015995: chlorophyll biosynthetic process	9.33E-04
35	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	1.10E-03
36	GO:0009854: oxidative photosynthetic carbon pathway	1.10E-03
37	GO:0010019: chloroplast-nucleus signaling pathway	1.10E-03
38	GO:0006810: transport	1.13E-03
39	GO:0030026: cellular manganese ion homeostasis	1.29E-03
40	GO:0006605: protein targeting	1.48E-03
41	GO:0032508: DNA duplex unwinding	1.48E-03
42	GO:0031540: regulation of anthocyanin biosynthetic process	1.48E-03
43	GO:0071482: cellular response to light stimulus	1.69E-03
44	GO:0010204: defense response signaling pathway, resistance gene-independent	1.69E-03
45	GO:0017004: cytochrome complex assembly	1.69E-03
46	GO:0006754: ATP biosynthetic process	1.91E-03
47	GO:0009638: phototropism	2.14E-03
48	GO:0007346: regulation of mitotic cell cycle	2.14E-03
49	GO:0019538: protein metabolic process	2.37E-03
50	GO:0043069: negative regulation of programmed cell death	2.37E-03
51	GO:0043085: positive regulation of catalytic activity	2.61E-03
52	GO:0006352: DNA-templated transcription, initiation	2.61E-03
53	GO:0009684: indoleacetic acid biosynthetic process	2.61E-03
54	GO:0009785: blue light signaling pathway	3.12E-03
55	GO:0006108: malate metabolic process	3.12E-03
56	GO:0009767: photosynthetic electron transport chain	3.12E-03
57	GO:0010020: chloroplast fission	3.38E-03
58	GO:0010207: photosystem II assembly	3.38E-03
59	GO:0042343: indole glucosinolate metabolic process	3.66E-03
60	GO:0046688: response to copper ion	3.66E-03
61	GO:0006636: unsaturated fatty acid biosynthetic process	3.94E-03
62	GO:0042023: DNA endoreduplication	3.94E-03
63	GO:0006833: water transport	3.94E-03
64	GO:0051302: regulation of cell division	4.52E-03
65	GO:0098542: defense response to other organism	4.82E-03
66	GO:0006633: fatty acid biosynthetic process	4.89E-03
67	GO:0009306: protein secretion	5.77E-03
68	GO:0006662: glycerol ether metabolic process	6.78E-03
69	GO:0007018: microtubule-based movement	7.13E-03
70	GO:0000302: response to reactive oxygen species	7.85E-03
71	GO:0016032: viral process	8.22E-03
72	GO:0000910: cytokinesis	9.75E-03
73	GO:0010027: thylakoid membrane organization	1.02E-02
74	GO:0009627: systemic acquired resistance	1.10E-02
75	GO:0018298: protein-chromophore linkage	1.22E-02
76	GO:0000160: phosphorelay signal transduction system	1.27E-02
77	GO:0009813: flavonoid biosynthetic process	1.27E-02
78	GO:0006811: ion transport	1.31E-02
79	GO:0009631: cold acclimation	1.36E-02
80	GO:0010119: regulation of stomatal movement	1.36E-02
81	GO:0009637: response to blue light	1.45E-02
82	GO:0006099: tricarboxylic acid cycle	1.49E-02
83	GO:0034599: cellular response to oxidative stress	1.49E-02
84	GO:0006631: fatty acid metabolic process	1.64E-02
85	GO:0008152: metabolic process	1.68E-02
86	GO:0009926: auxin polar transport	1.73E-02
87	GO:0009636: response to toxic substance	1.88E-02
88	GO:0006855: drug transmembrane transport	1.93E-02
89	GO:0006812: cation transport	2.04E-02
90	GO:0005975: carbohydrate metabolic process	2.16E-02
91	GO:0010224: response to UV-B	2.19E-02
92	GO:0051726: regulation of cell cycle	2.87E-02
93	GO:0051301: cell division	2.95E-02
94	GO:0055114: oxidation-reduction process	3.83E-02
95	GO:0006413: translational initiation	3.86E-02
96	GO:0007623: circadian rhythm	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
4	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
5	GO:0010486: manganese:proton antiporter activity	0.00E+00
6	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
7	GO:0016491: oxidoreductase activity	2.71E-05
8	GO:0046906: tetrapyrrole binding	7.75E-05
9	GO:0080132: fatty acid alpha-hydroxylase activity	7.75E-05
10	GO:0009496: plastoquinol--plastocyanin reductase activity	7.75E-05
11	GO:0008568: microtubule-severing ATPase activity	7.75E-05
12	GO:0008746: NAD(P)+ transhydrogenase activity	7.75E-05
13	GO:0004328: formamidase activity	7.75E-05
14	GO:0004312: fatty acid synthase activity	1.85E-04
15	GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity	1.85E-04
16	GO:0004103: choline kinase activity	1.85E-04
17	GO:0080045: quercetin 3'-O-glucosyltransferase activity	1.85E-04
18	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	3.11E-04
19	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	4.49E-04
20	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	4.49E-04
21	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	4.49E-04
22	GO:0009882: blue light photoreceptor activity	4.49E-04
23	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	4.49E-04
24	GO:0010181: FMN binding	4.90E-04
25	GO:0016987: sigma factor activity	5.98E-04
26	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	5.98E-04
27	GO:0008891: glycolate oxidase activity	5.98E-04
28	GO:0001053: plastid sigma factor activity	5.98E-04
29	GO:0016846: carbon-sulfur lyase activity	7.57E-04
30	GO:0004040: amidase activity	7.57E-04
31	GO:0016887: ATPase activity	7.80E-04
32	GO:0015250: water channel activity	8.00E-04
33	GO:0000293: ferric-chelate reductase activity	9.24E-04
34	GO:0016615: malate dehydrogenase activity	9.24E-04
35	GO:0080046: quercetin 4'-O-glucosyltransferase activity	9.24E-04
36	GO:0030060: L-malate dehydrogenase activity	1.10E-03
37	GO:0019899: enzyme binding	1.29E-03
38	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.91E-03
39	GO:0005384: manganese ion transmembrane transporter activity	2.14E-03
40	GO:0004565: beta-galactosidase activity	3.12E-03
41	GO:0004089: carbonate dehydratase activity	3.12E-03
42	GO:0031072: heat shock protein binding	3.12E-03
43	GO:0000155: phosphorelay sensor kinase activity	3.12E-03
44	GO:0043130: ubiquitin binding	4.23E-03
45	GO:0008324: cation transmembrane transporter activity	4.52E-03
46	GO:0003729: mRNA binding	5.05E-03
47	GO:0047134: protein-disulfide reductase activity	6.10E-03
48	GO:0008080: N-acetyltransferase activity	6.78E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	7.13E-03
50	GO:0019901: protein kinase binding	7.49E-03
51	GO:0048038: quinone binding	7.85E-03
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.59E-03
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.22E-02
54	GO:0015238: drug transmembrane transporter activity	1.27E-02
55	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.31E-02
56	GO:0003824: catalytic activity	1.43E-02
57	GO:0042393: histone binding	1.59E-02
58	GO:0004364: glutathione transferase activity	1.68E-02
59	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.14E-02
60	GO:0003777: microtubule motor activity	2.30E-02
61	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.58E-02
62	GO:0004650: polygalacturonase activity	2.58E-02
63	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.58E-02
64	GO:0022857: transmembrane transporter activity	2.64E-02
65	GO:0016874: ligase activity	2.64E-02
66	GO:0051082: unfolded protein binding	2.75E-02
67	GO:0015035: protein disulfide oxidoreductase activity	2.81E-02
68	GO:0016829: lyase activity	3.42E-02
69	GO:0030170: pyridoxal phosphate binding	3.48E-02
70	GO:0015144: carbohydrate transmembrane transporter activity	3.67E-02
71	GO:0015297: antiporter activity	3.93E-02
72	GO:0005351: sugar:proton symporter activity	3.99E-02
73	GO:0008017: microtubule binding	4.19E-02
74	GO:0008194: UDP-glycosyltransferase activity	4.40E-02
75	GO:0042802: identical protein binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.53E-08
2	GO:0009535: chloroplast thylakoid membrane	1.99E-06
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.04E-05
4	GO:0043674: columella	7.75E-05
5	GO:0009898: cytoplasmic side of plasma membrane	5.98E-04
6	GO:0009512: cytochrome b6f complex	7.57E-04
7	GO:0042807: central vacuole	1.29E-03
8	GO:0009986: cell surface	1.29E-03
9	GO:0009570: chloroplast stroma	1.45E-03
10	GO:0031969: chloroplast membrane	1.54E-03
11	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	1.69E-03
12	GO:0009941: chloroplast envelope	2.51E-03
13	GO:0032040: small-subunit processome	2.86E-03
14	GO:0005773: vacuole	3.19E-03
15	GO:0016021: integral component of membrane	4.06E-03
16	GO:0009705: plant-type vacuole membrane	5.37E-03
17	GO:0005871: kinesin complex	6.10E-03
18	GO:0009534: chloroplast thylakoid	6.60E-03
19	GO:0005770: late endosome	6.78E-03
20	GO:0046658: anchored component of plasma membrane	7.10E-03
21	GO:0009522: photosystem I	7.13E-03
22	GO:0009504: cell plate	7.49E-03
23	GO:0005694: chromosome	8.22E-03
24	GO:0016020: membrane	1.11E-02
25	GO:0019005: SCF ubiquitin ligase complex	1.22E-02
26	GO:0009707: chloroplast outer membrane	1.22E-02
27	GO:0005819: spindle	1.54E-02
28	GO:0031902: late endosome membrane	1.64E-02
29	GO:0031977: thylakoid lumen	1.64E-02
30	GO:0005887: integral component of plasma membrane	2.07E-02
31	GO:0005777: peroxisome	3.11E-02
32	GO:0009543: chloroplast thylakoid lumen	3.23E-02
33	GO:0005623: cell	3.29E-02
34	GO:0009524: phragmoplast	3.35E-02
35	GO:0005886: plasma membrane	3.98E-02
36	GO:0031225: anchored component of membrane	4.21E-02