co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G35420

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0016118: carotenoid catabolic process	0.00E+00
5	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
6	GO:0015843: methylammonium transport	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	2.10E-07
8	GO:0010207: photosystem II assembly	2.78E-05
9	GO:0009854: oxidative photosynthetic carbon pathway	1.00E-04
10	GO:0046467: membrane lipid biosynthetic process	2.04E-04
11	GO:0071277: cellular response to calcium ion	2.04E-04
12	GO:0015671: oxygen transport	2.04E-04
13	GO:0000481: maturation of 5S rRNA	2.04E-04
14	GO:0042371: vitamin K biosynthetic process	2.04E-04
15	GO:0071461: cellular response to redox state	2.04E-04
16	GO:0080093: regulation of photorespiration	2.04E-04
17	GO:0031998: regulation of fatty acid beta-oxidation	2.04E-04
18	GO:0034337: RNA folding	2.04E-04
19	GO:0071482: cellular response to light stimulus	2.11E-04
20	GO:0009657: plastid organization	2.11E-04
21	GO:0006098: pentose-phosphate shunt	2.57E-04
22	GO:0005982: starch metabolic process	3.06E-04
23	GO:0015979: photosynthesis	4.12E-04
24	GO:0080005: photosystem stoichiometry adjustment	4.57E-04
25	GO:0016124: xanthophyll catabolic process	4.57E-04
26	GO:0071457: cellular response to ozone	4.57E-04
27	GO:0010541: acropetal auxin transport	4.57E-04
28	GO:0016121: carotene catabolic process	4.57E-04
29	GO:0010218: response to far red light	4.93E-04
30	GO:0006094: gluconeogenesis	5.42E-04
31	GO:0055114: oxidation-reduction process	5.59E-04
32	GO:0009637: response to blue light	5.89E-04
33	GO:0010020: chloroplast fission	6.10E-04
34	GO:0019253: reductive pentose-phosphate cycle	6.10E-04
35	GO:0010160: formation of animal organ boundary	7.44E-04
36	GO:0090391: granum assembly	7.44E-04
37	GO:0005977: glycogen metabolic process	7.44E-04
38	GO:0006636: unsaturated fatty acid biosynthetic process	7.58E-04
39	GO:0009768: photosynthesis, light harvesting in photosystem I	9.21E-04
40	GO:0046653: tetrahydrofolate metabolic process	1.06E-03
41	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.06E-03
42	GO:0010731: protein glutathionylation	1.06E-03
43	GO:0015696: ammonium transport	1.06E-03
44	GO:2001141: regulation of RNA biosynthetic process	1.06E-03
45	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.06E-03
46	GO:0071484: cellular response to light intensity	1.06E-03
47	GO:0009152: purine ribonucleotide biosynthetic process	1.06E-03
48	GO:0019748: secondary metabolic process	1.10E-03
49	GO:0005975: carbohydrate metabolic process	1.16E-03
50	GO:0009765: photosynthesis, light harvesting	1.41E-03
51	GO:0015994: chlorophyll metabolic process	1.41E-03
52	GO:0072488: ammonium transmembrane transport	1.41E-03
53	GO:2000122: negative regulation of stomatal complex development	1.41E-03
54	GO:0010021: amylopectin biosynthetic process	1.41E-03
55	GO:0010037: response to carbon dioxide	1.41E-03
56	GO:0015976: carbon utilization	1.41E-03
57	GO:0071486: cellular response to high light intensity	1.41E-03
58	GO:0015689: molybdate ion transport	1.41E-03
59	GO:0006096: glycolytic process	1.44E-03
60	GO:0006465: signal peptide processing	1.80E-03
61	GO:0071493: cellular response to UV-B	1.80E-03
62	GO:0043097: pyrimidine nucleoside salvage	1.80E-03
63	GO:0006564: L-serine biosynthetic process	1.80E-03
64	GO:0000278: mitotic cell cycle	1.80E-03
65	GO:0006097: glyoxylate cycle	1.80E-03
66	GO:0019252: starch biosynthetic process	1.88E-03
67	GO:0060918: auxin transport	2.21E-03
68	GO:0006206: pyrimidine nucleobase metabolic process	2.21E-03
69	GO:0010190: cytochrome b6f complex assembly	2.21E-03
70	GO:0050665: hydrogen peroxide biosynthetic process	2.21E-03
71	GO:0042549: photosystem II stabilization	2.21E-03
72	GO:0071333: cellular response to glucose stimulus	2.66E-03
73	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.66E-03
74	GO:1900056: negative regulation of leaf senescence	3.13E-03
75	GO:0009769: photosynthesis, light harvesting in photosystem II	3.13E-03
76	GO:0009645: response to low light intensity stimulus	3.13E-03
77	GO:0009642: response to light intensity	3.63E-03
78	GO:0070413: trehalose metabolism in response to stress	3.63E-03
79	GO:0009704: de-etiolation	3.63E-03
80	GO:0032508: DNA duplex unwinding	3.63E-03
81	GO:0050821: protein stabilization	3.63E-03
82	GO:0052543: callose deposition in cell wall	3.63E-03
83	GO:0016559: peroxisome fission	3.63E-03
84	GO:0006810: transport	3.66E-03
85	GO:0018298: protein-chromophore linkage	3.76E-03
86	GO:0019430: removal of superoxide radicals	4.15E-03
87	GO:0006811: ion transport	4.15E-03
88	GO:0010204: defense response signaling pathway, resistance gene-independent	4.15E-03
89	GO:0019432: triglyceride biosynthetic process	4.70E-03
90	GO:0090333: regulation of stomatal closure	4.70E-03
91	GO:0006783: heme biosynthetic process	4.70E-03
92	GO:0009853: photorespiration	4.76E-03
93	GO:0034599: cellular response to oxidative stress	4.98E-03
94	GO:0006779: porphyrin-containing compound biosynthetic process	5.27E-03
95	GO:0010380: regulation of chlorophyll biosynthetic process	5.27E-03
96	GO:0007346: regulation of mitotic cell cycle	5.27E-03
97	GO:0006782: protoporphyrinogen IX biosynthetic process	5.86E-03
98	GO:0010114: response to red light	6.13E-03
99	GO:0043085: positive regulation of catalytic activity	6.48E-03
100	GO:0006352: DNA-templated transcription, initiation	6.48E-03
101	GO:0018119: peptidyl-cysteine S-nitrosylation	6.48E-03
102	GO:0008361: regulation of cell size	7.12E-03
103	GO:0009416: response to light stimulus	7.27E-03
104	GO:0006108: malate metabolic process	7.78E-03
105	GO:0006006: glucose metabolic process	7.78E-03
106	GO:0009767: photosynthetic electron transport chain	7.78E-03
107	GO:0010143: cutin biosynthetic process	8.47E-03
108	GO:0010540: basipetal auxin transport	8.47E-03
109	GO:0010025: wax biosynthetic process	9.90E-03
110	GO:0042023: DNA endoreduplication	9.90E-03
111	GO:0009833: plant-type primary cell wall biogenesis	9.90E-03
112	GO:0009409: response to cold	1.04E-02
113	GO:0005992: trehalose biosynthetic process	1.06E-02
114	GO:0009269: response to desiccation	1.22E-02
115	GO:0035428: hexose transmembrane transport	1.30E-02
116	GO:0030433: ubiquitin-dependent ERAD pathway	1.30E-02
117	GO:0071215: cellular response to abscisic acid stimulus	1.38E-02
118	GO:0048443: stamen development	1.47E-02
119	GO:0009058: biosynthetic process	1.56E-02
120	GO:0042631: cellular response to water deprivation	1.64E-02
121	GO:0042335: cuticle development	1.64E-02
122	GO:0009958: positive gravitropism	1.73E-02
123	GO:0071472: cellular response to salt stress	1.73E-02
124	GO:0006520: cellular amino acid metabolic process	1.73E-02
125	GO:0006662: glycerol ether metabolic process	1.73E-02
126	GO:0046323: glucose import	1.73E-02
127	GO:0007059: chromosome segregation	1.82E-02
128	GO:0006413: translational initiation	1.91E-02
129	GO:0010193: response to ozone	2.01E-02
130	GO:0007264: small GTPase mediated signal transduction	2.11E-02
131	GO:0032502: developmental process	2.11E-02
132	GO:1901657: glycosyl compound metabolic process	2.21E-02
133	GO:0009639: response to red or far red light	2.30E-02
134	GO:0009735: response to cytokinin	2.53E-02
135	GO:0009627: systemic acquired resistance	2.83E-02
136	GO:0042128: nitrate assimilation	2.83E-02
137	GO:0016310: phosphorylation	2.86E-02
138	GO:0015995: chlorophyll biosynthetic process	2.94E-02
139	GO:0006950: response to stress	2.94E-02
140	GO:0016311: dephosphorylation	3.05E-02
141	GO:0030244: cellulose biosynthetic process	3.16E-02
142	GO:0009658: chloroplast organization	3.17E-02
143	GO:0048527: lateral root development	3.50E-02
144	GO:0010119: regulation of stomatal movement	3.50E-02
145	GO:0009631: cold acclimation	3.50E-02
146	GO:0009910: negative regulation of flower development	3.50E-02
147	GO:0055085: transmembrane transport	3.79E-02
148	GO:0006099: tricarboxylic acid cycle	3.86E-02
149	GO:0080167: response to karrikin	3.92E-02
150	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.05E-02
151	GO:0006631: fatty acid metabolic process	4.22E-02
152	GO:0009640: photomorphogenesis	4.47E-02
153	GO:0009926: auxin polar transport	4.47E-02
154	GO:0000209: protein polyubiquitination	4.60E-02
155	GO:0009644: response to high light intensity	4.73E-02
156	GO:0009636: response to toxic substance	4.86E-02
157	GO:0006855: drug transmembrane transport	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
4	GO:0008974: phosphoribulokinase activity	0.00E+00
5	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0008465: glycerate dehydrogenase activity	0.00E+00
7	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
8	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
9	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
10	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
11	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
12	GO:0009011: starch synthase activity	3.05E-05
13	GO:0004332: fructose-bisphosphate aldolase activity	7.23E-05
14	GO:0004328: formamidase activity	2.04E-04
15	GO:0005344: oxygen transporter activity	2.04E-04
16	GO:0035671: enone reductase activity	2.04E-04
17	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	2.04E-04
18	GO:0033201: alpha-1,4-glucan synthase activity	4.57E-04
19	GO:0004312: fatty acid synthase activity	4.57E-04
20	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.57E-04
21	GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity	4.57E-04
22	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.57E-04
23	GO:0019156: isoamylase activity	4.57E-04
24	GO:0008883: glutamyl-tRNA reductase activity	4.57E-04
25	GO:0047746: chlorophyllase activity	4.57E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	4.57E-04
27	GO:0004565: beta-galactosidase activity	5.42E-04
28	GO:0004373: glycogen (starch) synthase activity	7.44E-04
29	GO:0050734: hydroxycinnamoyltransferase activity	7.44E-04
30	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	7.44E-04
31	GO:0008864: formyltetrahydrofolate deformylase activity	7.44E-04
32	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.44E-04
33	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.44E-04
34	GO:0031409: pigment binding	7.58E-04
35	GO:0051287: NAD binding	1.02E-03
36	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.06E-03
37	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.06E-03
38	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.06E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.06E-03
40	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.06E-03
41	GO:0016987: sigma factor activity	1.41E-03
42	GO:0015098: molybdate ion transmembrane transporter activity	1.41E-03
43	GO:0008891: glycolate oxidase activity	1.41E-03
44	GO:0001053: plastid sigma factor activity	1.41E-03
45	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.41E-03
46	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.80E-03
47	GO:0000293: ferric-chelate reductase activity	2.21E-03
48	GO:0004784: superoxide dismutase activity	2.21E-03
49	GO:0004556: alpha-amylase activity	2.21E-03
50	GO:0016615: malate dehydrogenase activity	2.21E-03
51	GO:0008519: ammonium transmembrane transporter activity	2.21E-03
52	GO:2001070: starch binding	2.21E-03
53	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.66E-03
54	GO:0004849: uridine kinase activity	2.66E-03
55	GO:0030060: L-malate dehydrogenase activity	2.66E-03
56	GO:0016491: oxidoreductase activity	2.95E-03
57	GO:0016168: chlorophyll binding	3.05E-03
58	GO:0005337: nucleoside transmembrane transporter activity	3.63E-03
59	GO:0042802: identical protein binding	4.94E-03
60	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.94E-03
61	GO:0003993: acid phosphatase activity	4.98E-03
62	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.27E-03
63	GO:0050661: NADP binding	5.42E-03
64	GO:0030234: enzyme regulator activity	5.86E-03
65	GO:0008047: enzyme activator activity	5.86E-03
66	GO:0004185: serine-type carboxypeptidase activity	6.13E-03
67	GO:0010329: auxin efflux transmembrane transporter activity	7.78E-03
68	GO:0004089: carbonate dehydratase activity	7.78E-03
69	GO:0008266: poly(U) RNA binding	8.47E-03
70	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	8.47E-03
71	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.01E-02
72	GO:0043130: ubiquitin binding	1.06E-02
73	GO:0005528: FK506 binding	1.06E-02
74	GO:0005216: ion channel activity	1.14E-02
75	GO:0016760: cellulose synthase (UDP-forming) activity	1.38E-02
76	GO:0022891: substrate-specific transmembrane transporter activity	1.38E-02
77	GO:0003727: single-stranded RNA binding	1.47E-02
78	GO:0047134: protein-disulfide reductase activity	1.55E-02
79	GO:0005355: glucose transmembrane transporter activity	1.82E-02
80	GO:0010181: FMN binding	1.82E-02
81	GO:0004791: thioredoxin-disulfide reductase activity	1.82E-02
82	GO:0016853: isomerase activity	1.82E-02
83	GO:0019901: protein kinase binding	1.92E-02
84	GO:0048038: quinone binding	2.01E-02
85	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.21E-02
86	GO:0016791: phosphatase activity	2.30E-02
87	GO:0016759: cellulose synthase activity	2.30E-02
88	GO:0016597: amino acid binding	2.51E-02
89	GO:0102483: scopolin beta-glucosidase activity	2.94E-02
90	GO:0030247: polysaccharide binding	2.94E-02
91	GO:0016788: hydrolase activity, acting on ester bonds	3.23E-02
92	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.38E-02
93	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.50E-02
94	GO:0008422: beta-glucosidase activity	3.98E-02
95	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.98E-02
96	GO:0042393: histone binding	4.10E-02
97	GO:0052689: carboxylic ester hydrolase activity	4.33E-02
98	GO:0004364: glutathione transferase activity	4.35E-02
99	GO:0043621: protein self-association	4.73E-02
100	GO:0051537: 2 iron, 2 sulfur cluster binding	4.73E-02
101	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	2.57E-23
3	GO:0009535: chloroplast thylakoid membrane	3.24E-10
4	GO:0009941: chloroplast envelope	7.64E-09
5	GO:0009570: chloroplast stroma	8.12E-08
6	GO:0009579: thylakoid	2.16E-07
7	GO:0009534: chloroplast thylakoid	2.26E-07
8	GO:0010287: plastoglobule	2.49E-06
9	GO:0009543: chloroplast thylakoid lumen	2.92E-06
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.20E-06
11	GO:0048046: apoplast	1.82E-05
12	GO:0005773: vacuole	2.19E-05
13	GO:0009522: photosystem I	1.52E-04
14	GO:0009523: photosystem II	1.68E-04
15	GO:0005787: signal peptidase complex	2.04E-04
16	GO:0009344: nitrite reductase complex [NAD(P)H]	2.04E-04
17	GO:0010319: stromule	2.63E-04
18	GO:0043036: starch grain	4.57E-04
19	GO:0005777: peroxisome	5.57E-04
20	GO:0030095: chloroplast photosystem II	6.10E-04
21	GO:0030076: light-harvesting complex	6.82E-04
22	GO:0031977: thylakoid lumen	7.31E-04
23	GO:0009654: photosystem II oxygen evolving complex	9.21E-04
24	GO:0009517: PSII associated light-harvesting complex II	1.41E-03
25	GO:0009526: plastid envelope	1.41E-03
26	GO:0031969: chloroplast membrane	1.68E-03
27	GO:0019898: extrinsic component of membrane	1.88E-03
28	GO:0009501: amyloplast	3.63E-03
29	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	4.15E-03
30	GO:0005765: lysosomal membrane	6.48E-03
31	GO:0032040: small-subunit processome	7.12E-03
32	GO:0043234: protein complex	9.90E-03
33	GO:0042651: thylakoid membrane	1.14E-02
34	GO:0005623: cell	1.52E-02
35	GO:0016021: integral component of membrane	2.33E-02
36	GO:0009707: chloroplast outer membrane	3.16E-02
37	GO:0019005: SCF ubiquitin ligase complex	3.16E-02
38	GO:0005819: spindle	3.98E-02
39	GO:0031902: late endosome membrane	4.22E-02