co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G33560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006216: cytidine catabolic process	0.00E+00
2	GO:0006858: extracellular transport	0.00E+00
3	GO:0046680: response to DDT	0.00E+00
4	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
5	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
6	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
7	GO:0010398: xylogalacturonan metabolic process	0.00E+00
8	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
9	GO:0072722: response to amitrole	0.00E+00
10	GO:0006903: vesicle targeting	0.00E+00
11	GO:0006102: isocitrate metabolic process	4.81E-06
12	GO:0046686: response to cadmium ion	7.70E-06
13	GO:0046283: anthocyanin-containing compound metabolic process	6.67E-05
14	GO:0006564: L-serine biosynthetic process	6.67E-05
15	GO:0009407: toxin catabolic process	6.71E-05
16	GO:0006099: tricarboxylic acid cycle	9.43E-05
17	GO:0010421: hydrogen peroxide-mediated programmed cell death	2.46E-04
18	GO:0000032: cell wall mannoprotein biosynthetic process	2.46E-04
19	GO:0042964: thioredoxin reduction	2.46E-04
20	GO:1900384: regulation of flavonol biosynthetic process	2.46E-04
21	GO:0010120: camalexin biosynthetic process	2.78E-04
22	GO:1901657: glycosyl compound metabolic process	3.17E-04
23	GO:0009821: alkaloid biosynthetic process	3.36E-04
24	GO:0009615: response to virus	4.34E-04
25	GO:0010372: positive regulation of gibberellin biosynthetic process	5.44E-04
26	GO:1902000: homogentisate catabolic process	5.44E-04
27	GO:0080026: response to indolebutyric acid	5.44E-04
28	GO:0051252: regulation of RNA metabolic process	5.44E-04
29	GO:0015709: thiosulfate transport	5.44E-04
30	GO:0031204: posttranslational protein targeting to membrane, translocation	5.44E-04
31	GO:0071422: succinate transmembrane transport	5.44E-04
32	GO:0046939: nucleotide phosphorylation	5.44E-04
33	GO:0009805: coumarin biosynthetic process	5.44E-04
34	GO:0009058: biosynthetic process	6.27E-04
35	GO:0010102: lateral root morphogenesis	7.00E-04
36	GO:0006807: nitrogen compound metabolic process	7.00E-04
37	GO:0009062: fatty acid catabolic process	8.83E-04
38	GO:0010359: regulation of anion channel activity	8.83E-04
39	GO:0055074: calcium ion homeostasis	8.83E-04
40	GO:0090630: activation of GTPase activity	8.83E-04
41	GO:0072661: protein targeting to plasma membrane	8.83E-04
42	GO:0006517: protein deglycosylation	8.83E-04
43	GO:0010272: response to silver ion	8.83E-04
44	GO:0009072: aromatic amino acid family metabolic process	8.83E-04
45	GO:0033591: response to L-ascorbic acid	8.83E-04
46	GO:0010150: leaf senescence	9.41E-04
47	GO:0000162: tryptophan biosynthetic process	9.77E-04
48	GO:0009751: response to salicylic acid	1.02E-03
49	GO:0006612: protein targeting to membrane	1.26E-03
50	GO:0006893: Golgi to plasma membrane transport	1.26E-03
51	GO:0080024: indolebutyric acid metabolic process	1.26E-03
52	GO:0000187: activation of MAPK activity	1.26E-03
53	GO:0009298: GDP-mannose biosynthetic process	1.26E-03
54	GO:0015729: oxaloacetate transport	1.26E-03
55	GO:0009636: response to toxic substance	1.30E-03
56	GO:0015031: protein transport	1.42E-03
57	GO:0010227: floral organ abscission	1.55E-03
58	GO:1902584: positive regulation of response to water deprivation	1.68E-03
59	GO:0010188: response to microbial phytotoxin	1.68E-03
60	GO:0009306: protein secretion	1.68E-03
61	GO:0006878: cellular copper ion homeostasis	1.68E-03
62	GO:0010222: stem vascular tissue pattern formation	1.68E-03
63	GO:0006096: glycolytic process	2.02E-03
64	GO:0045927: positive regulation of growth	2.15E-03
65	GO:0071423: malate transmembrane transport	2.15E-03
66	GO:0005513: detection of calcium ion	2.15E-03
67	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.15E-03
68	GO:0006465: signal peptide processing	2.15E-03
69	GO:0009620: response to fungus	2.28E-03
70	GO:0009851: auxin biosynthetic process	2.44E-03
71	GO:0060918: auxin transport	2.65E-03
72	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.65E-03
73	GO:0009228: thiamine biosynthetic process	2.65E-03
74	GO:0035435: phosphate ion transmembrane transport	2.65E-03
75	GO:0009972: cytidine deamination	2.65E-03
76	GO:0006561: proline biosynthetic process	2.65E-03
77	GO:0006555: methionine metabolic process	2.65E-03
78	GO:0016192: vesicle-mediated transport	2.73E-03
79	GO:0009612: response to mechanical stimulus	3.18E-03
80	GO:0009082: branched-chain amino acid biosynthetic process	3.18E-03
81	GO:0034389: lipid particle organization	3.18E-03
82	GO:0009099: valine biosynthetic process	3.18E-03
83	GO:0009554: megasporogenesis	3.18E-03
84	GO:0080113: regulation of seed growth	3.18E-03
85	GO:0019509: L-methionine salvage from methylthioadenosine	3.18E-03
86	GO:0080186: developmental vegetative growth	3.75E-03
87	GO:0071669: plant-type cell wall organization or biogenesis	3.75E-03
88	GO:0008272: sulfate transport	3.75E-03
89	GO:0050829: defense response to Gram-negative bacterium	3.75E-03
90	GO:1900056: negative regulation of leaf senescence	3.75E-03
91	GO:0006402: mRNA catabolic process	4.35E-03
92	GO:0006491: N-glycan processing	4.35E-03
93	GO:0006888: ER to Golgi vesicle-mediated transport	4.43E-03
94	GO:0019430: removal of superoxide radicals	4.98E-03
95	GO:0060321: acceptance of pollen	4.98E-03
96	GO:0010497: plasmodesmata-mediated intercellular transport	4.98E-03
97	GO:0009097: isoleucine biosynthetic process	4.98E-03
98	GO:0010204: defense response signaling pathway, resistance gene-independent	4.98E-03
99	GO:0009699: phenylpropanoid biosynthetic process	4.98E-03
100	GO:0006002: fructose 6-phosphate metabolic process	4.98E-03
101	GO:0022900: electron transport chain	4.98E-03
102	GO:0006499: N-terminal protein myristoylation	5.41E-03
103	GO:0046685: response to arsenic-containing substance	5.65E-03
104	GO:0010043: response to zinc ion	5.67E-03
105	GO:0009098: leucine biosynthetic process	6.33E-03
106	GO:2000280: regulation of root development	6.33E-03
107	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.33E-03
108	GO:0006032: chitin catabolic process	7.06E-03
109	GO:0009688: abscisic acid biosynthetic process	7.06E-03
110	GO:0043069: negative regulation of programmed cell death	7.06E-03
111	GO:0006887: exocytosis	7.39E-03
112	GO:0009682: induced systemic resistance	7.80E-03
113	GO:0052544: defense response by callose deposition in cell wall	7.80E-03
114	GO:0000272: polysaccharide catabolic process	7.80E-03
115	GO:0000209: protein polyubiquitination	8.34E-03
116	GO:0016925: protein sumoylation	8.58E-03
117	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.58E-03
118	GO:0006790: sulfur compound metabolic process	8.58E-03
119	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	9.38E-03
120	GO:0055046: microgametogenesis	9.38E-03
121	GO:0009718: anthocyanin-containing compound biosynthetic process	9.38E-03
122	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	9.71E-03
123	GO:0042742: defense response to bacterium	9.79E-03
124	GO:0009846: pollen germination	1.01E-02
125	GO:0034605: cellular response to heat	1.02E-02
126	GO:0007030: Golgi organization	1.11E-02
127	GO:0010167: response to nitrate	1.11E-02
128	GO:0019853: L-ascorbic acid biosynthetic process	1.11E-02
129	GO:0046854: phosphatidylinositol phosphorylation	1.11E-02
130	GO:0010053: root epidermal cell differentiation	1.11E-02
131	GO:0007031: peroxisome organization	1.11E-02
132	GO:0051603: proteolysis involved in cellular protein catabolic process	1.12E-02
133	GO:0009651: response to salt stress	1.16E-02
134	GO:0006417: regulation of translation	1.20E-02
135	GO:0034976: response to endoplasmic reticulum stress	1.20E-02
136	GO:0005992: trehalose biosynthetic process	1.29E-02
137	GO:0006874: cellular calcium ion homeostasis	1.38E-02
138	GO:0016998: cell wall macromolecule catabolic process	1.47E-02
139	GO:0015992: proton transport	1.47E-02
140	GO:0019915: lipid storage	1.47E-02
141	GO:0045454: cell redox homeostasis	1.48E-02
142	GO:0006886: intracellular protein transport	1.54E-02
143	GO:0009814: defense response, incompatible interaction	1.57E-02
144	GO:0019748: secondary metabolic process	1.57E-02
145	GO:0009561: megagametogenesis	1.77E-02
146	GO:0010051: xylem and phloem pattern formation	1.99E-02
147	GO:0010118: stomatal movement	1.99E-02
148	GO:0005975: carbohydrate metabolic process	2.01E-02
149	GO:0045489: pectin biosynthetic process	2.09E-02
150	GO:0006662: glycerol ether metabolic process	2.09E-02
151	GO:0048544: recognition of pollen	2.21E-02
152	GO:0009646: response to absence of light	2.21E-02
153	GO:0050832: defense response to fungus	2.40E-02
154	GO:0006635: fatty acid beta-oxidation	2.43E-02
155	GO:0031047: gene silencing by RNA	2.55E-02
156	GO:0009630: gravitropism	2.55E-02
157	GO:0030163: protein catabolic process	2.67E-02
158	GO:0045490: pectin catabolic process	2.67E-02
159	GO:0019760: glucosinolate metabolic process	2.79E-02
160	GO:0006464: cellular protein modification process	2.79E-02
161	GO:0006914: autophagy	2.79E-02
162	GO:0006904: vesicle docking involved in exocytosis	2.91E-02
163	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.99E-02
164	GO:0009617: response to bacterium	3.19E-02
165	GO:0006974: cellular response to DNA damage stimulus	3.42E-02
166	GO:0006906: vesicle fusion	3.42E-02
167	GO:0009627: systemic acquired resistance	3.42E-02
168	GO:0016049: cell growth	3.69E-02
169	GO:0048767: root hair elongation	3.96E-02
170	GO:0010119: regulation of stomatal movement	4.24E-02
171	GO:0009631: cold acclimation	4.24E-02
172	GO:0007568: aging	4.24E-02
173	GO:0009860: pollen tube growth	4.44E-02
174	GO:0045087: innate immune response	4.52E-02
175	GO:0034599: cellular response to oxidative stress	4.66E-02
176	GO:0009723: response to ethylene	4.76E-02
177	GO:0009409: response to cold	4.83E-02
178	GO:0006839: mitochondrial transport	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
4	GO:0047844: deoxycytidine deaminase activity	0.00E+00
5	GO:0016504: peptidase activator activity	0.00E+00
6	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
7	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
8	GO:0004449: isocitrate dehydrogenase (NAD+) activity	8.62E-08
9	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.77E-05
10	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	9.77E-05
11	GO:0004364: glutathione transferase activity	1.28E-04
12	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	2.46E-04
13	GO:0070401: NADP+ binding	2.46E-04
14	GO:0048037: cofactor binding	2.46E-04
15	GO:0004476: mannose-6-phosphate isomerase activity	2.46E-04
16	GO:0019786: Atg8-specific protease activity	2.46E-04
17	GO:2001147: camalexin binding	2.46E-04
18	GO:0004649: poly(ADP-ribose) glycohydrolase activity	2.46E-04
19	GO:0016229: steroid dehydrogenase activity	2.46E-04
20	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.46E-04
21	GO:2001227: quercitrin binding	2.46E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.46E-04
23	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.46E-04
24	GO:0030955: potassium ion binding	3.99E-04
25	GO:0016844: strictosidine synthase activity	3.99E-04
26	GO:0004743: pyruvate kinase activity	3.99E-04
27	GO:0008428: ribonuclease inhibitor activity	5.44E-04
28	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.44E-04
29	GO:0019172: glyoxalase III activity	5.44E-04
30	GO:0019779: Atg8 activating enzyme activity	5.44E-04
31	GO:1901677: phosphate transmembrane transporter activity	5.44E-04
32	GO:0015117: thiosulfate transmembrane transporter activity	5.44E-04
33	GO:0008517: folic acid transporter activity	5.44E-04
34	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	5.44E-04
35	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.44E-04
36	GO:0052739: phosphatidylserine 1-acylhydrolase activity	5.44E-04
37	GO:0010297: heteropolysaccharide binding	5.44E-04
38	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	5.44E-04
39	GO:0004617: phosphoglycerate dehydrogenase activity	5.44E-04
40	GO:0005310: dicarboxylic acid transmembrane transporter activity	8.83E-04
41	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.83E-04
42	GO:0015141: succinate transmembrane transporter activity	8.83E-04
43	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.83E-04
44	GO:0008422: beta-glucosidase activity	9.15E-04
45	GO:0019201: nucleotide kinase activity	1.26E-03
46	GO:0015131: oxaloacetate transmembrane transporter activity	1.26E-03
47	GO:0052656: L-isoleucine transaminase activity	1.26E-03
48	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.26E-03
49	GO:0052654: L-leucine transaminase activity	1.26E-03
50	GO:0017077: oxidative phosphorylation uncoupler activity	1.26E-03
51	GO:0052655: L-valine transaminase activity	1.26E-03
52	GO:0004298: threonine-type endopeptidase activity	1.30E-03
53	GO:0051287: NAD binding	1.43E-03
54	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.68E-03
55	GO:0070628: proteasome binding	1.68E-03
56	GO:0004084: branched-chain-amino-acid transaminase activity	1.68E-03
57	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.68E-03
58	GO:0004031: aldehyde oxidase activity	1.68E-03
59	GO:0050302: indole-3-acetaldehyde oxidase activity	1.68E-03
60	GO:0019776: Atg8 ligase activity	1.68E-03
61	GO:0004834: tryptophan synthase activity	1.68E-03
62	GO:0000287: magnesium ion binding	1.77E-03
63	GO:0008948: oxaloacetate decarboxylase activity	2.15E-03
64	GO:0031386: protein tag	2.15E-03
65	GO:0008374: O-acyltransferase activity	2.15E-03
66	GO:0004791: thioredoxin-disulfide reductase activity	2.27E-03
67	GO:0035252: UDP-xylosyltransferase activity	2.65E-03
68	GO:0004518: nuclease activity	2.78E-03
69	GO:0004126: cytidine deaminase activity	3.18E-03
70	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.18E-03
71	GO:0004017: adenylate kinase activity	3.18E-03
72	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.75E-03
73	GO:0003872: 6-phosphofructokinase activity	3.75E-03
74	GO:0015140: malate transmembrane transporter activity	3.75E-03
75	GO:0008320: protein transmembrane transporter activity	3.75E-03
76	GO:0043295: glutathione binding	3.75E-03
77	GO:0004033: aldo-keto reductase (NADP) activity	4.35E-03
78	GO:0004708: MAP kinase kinase activity	4.35E-03
79	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.35E-03
80	GO:0102483: scopolin beta-glucosidase activity	4.43E-03
81	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.43E-03
82	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	4.98E-03
83	GO:0003746: translation elongation factor activity	6.21E-03
84	GO:0004568: chitinase activity	7.06E-03
85	GO:0008559: xenobiotic-transporting ATPase activity	7.80E-03
86	GO:0015116: sulfate transmembrane transporter activity	8.58E-03
87	GO:0005198: structural molecule activity	9.01E-03
88	GO:0031072: heat shock protein binding	9.38E-03
89	GO:0031624: ubiquitin conjugating enzyme binding	1.02E-02
90	GO:0008061: chitin binding	1.11E-02
91	GO:0004970: ionotropic glutamate receptor activity	1.11E-02
92	GO:0005217: intracellular ligand-gated ion channel activity	1.11E-02
93	GO:0061630: ubiquitin protein ligase activity	1.25E-02
94	GO:0051082: unfolded protein binding	1.54E-02
95	GO:0003756: protein disulfide isomerase activity	1.77E-02
96	GO:0005507: copper ion binding	1.86E-02
97	GO:0047134: protein-disulfide reductase activity	1.88E-02
98	GO:0001085: RNA polymerase II transcription factor binding	2.09E-02
99	GO:0005199: structural constituent of cell wall	2.09E-02
100	GO:0030170: pyridoxal phosphate binding	2.15E-02
101	GO:0008565: protein transporter activity	2.32E-02
102	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.67E-02
103	GO:0005509: calcium ion binding	2.77E-02
104	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.91E-02
105	GO:0016597: amino acid binding	3.04E-02
106	GO:0044212: transcription regulatory region DNA binding	3.12E-02
107	GO:0051213: dioxygenase activity	3.16E-02
108	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.40E-02
109	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.42E-02
110	GO:0004683: calmodulin-dependent protein kinase activity	3.55E-02
111	GO:0003824: catalytic activity	3.58E-02
112	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.82E-02
113	GO:0005096: GTPase activator activity	3.96E-02
114	GO:0004601: peroxidase activity	4.13E-02
115	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.24E-02
116	GO:0030145: manganese ion binding	4.24E-02
117	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.24E-02
118	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.52E-02
119	GO:0003993: acid phosphatase activity	4.66E-02
120	GO:0000149: SNARE binding	4.81E-02
121	GO:0042393: histone binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005784: Sec61 translocon complex	0.00E+00
2	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
3	GO:0005829: cytosol	9.07E-06
4	GO:0005839: proteasome core complex	9.62E-05
5	GO:0016442: RISC complex	2.46E-04
6	GO:0031090: organelle membrane	3.36E-04
7	GO:0031901: early endosome membrane	3.36E-04
8	GO:0005783: endoplasmic reticulum	6.28E-04
9	GO:0005773: vacuole	7.18E-04
10	GO:0030130: clathrin coat of trans-Golgi network vesicle	8.83E-04
11	GO:0030132: clathrin coat of coated pit	8.83E-04
12	GO:0009530: primary cell wall	8.83E-04
13	GO:0005775: vacuolar lumen	1.26E-03
14	GO:0000502: proteasome complex	1.63E-03
15	GO:0005776: autophagosome	1.68E-03
16	GO:0005945: 6-phosphofructokinase complex	2.15E-03
17	GO:0005768: endosome	2.37E-03
18	GO:0030173: integral component of Golgi membrane	3.18E-03
19	GO:0005886: plasma membrane	3.51E-03
20	GO:0005737: cytoplasm	3.51E-03
21	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	3.75E-03
22	GO:0005788: endoplasmic reticulum lumen	3.98E-03
23	GO:0031982: vesicle	4.35E-03
24	GO:0000421: autophagosome membrane	4.35E-03
25	GO:0009506: plasmodesma	4.53E-03
26	GO:0005811: lipid particle	4.98E-03
27	GO:0019773: proteasome core complex, alpha-subunit complex	4.98E-03
28	GO:0010494: cytoplasmic stress granule	5.65E-03
29	GO:0005802: trans-Golgi network	6.51E-03
30	GO:0048471: perinuclear region of cytoplasm	7.80E-03
31	GO:0005750: mitochondrial respiratory chain complex III	1.02E-02
32	GO:0005794: Golgi apparatus	1.12E-02
33	GO:0031410: cytoplasmic vesicle	1.57E-02
34	GO:0005618: cell wall	1.65E-02
35	GO:0009504: cell plate	2.32E-02
36	GO:0016592: mediator complex	2.55E-02
37	GO:0000145: exocyst	2.55E-02
38	GO:0071944: cell periphery	2.67E-02
39	GO:0032580: Golgi cisterna membrane	2.79E-02
40	GO:0005778: peroxisomal membrane	2.91E-02
41	GO:0000932: P-body	3.16E-02
42	GO:0005667: transcription factor complex	3.42E-02
43	GO:0000151: ubiquitin ligase complex	3.82E-02
44	GO:0000325: plant-type vacuole	4.24E-02
45	GO:0009505: plant-type cell wall	4.33E-02
46	GO:0005777: peroxisome	4.66E-02