co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G33080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0001778: plasma membrane repair	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
6	GO:0016554: cytidine to uridine editing	4.89E-05
7	GO:0009082: branched-chain amino acid biosynthetic process	6.84E-05
8	GO:0009099: valine biosynthetic process	6.84E-05
9	GO:0009097: isoleucine biosynthetic process	1.47E-04
10	GO:0009090: homoserine biosynthetic process	1.60E-04
11	GO:0043489: RNA stabilization	1.60E-04
12	GO:1900865: chloroplast RNA modification	2.16E-04
13	GO:0006432: phenylalanyl-tRNA aminoacylation	3.65E-04
14	GO:0080009: mRNA methylation	3.65E-04
15	GO:0046740: transport of virus in host, cell to cell	3.65E-04
16	GO:2000123: positive regulation of stomatal complex development	3.65E-04
17	GO:0045910: negative regulation of DNA recombination	5.97E-04
18	GO:0006612: protein targeting to membrane	8.53E-04
19	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	8.53E-04
20	GO:0009067: aspartate family amino acid biosynthetic process	8.53E-04
21	GO:0032456: endocytic recycling	8.53E-04
22	GO:0010239: chloroplast mRNA processing	8.53E-04
23	GO:0016117: carotenoid biosynthetic process	1.01E-03
24	GO:2000038: regulation of stomatal complex development	1.13E-03
25	GO:0009755: hormone-mediated signaling pathway	1.13E-03
26	GO:0042274: ribosomal small subunit biogenesis	1.13E-03
27	GO:0009765: photosynthesis, light harvesting	1.13E-03
28	GO:0010305: leaf vascular tissue pattern formation	1.17E-03
29	GO:0080110: sporopollenin biosynthetic process	1.43E-03
30	GO:0016123: xanthophyll biosynthetic process	1.43E-03
31	GO:0010438: cellular response to sulfur starvation	1.43E-03
32	GO:0010375: stomatal complex patterning	1.43E-03
33	GO:0016120: carotene biosynthetic process	1.43E-03
34	GO:0016032: viral process	1.53E-03
35	GO:0033365: protein localization to organelle	1.76E-03
36	GO:0009612: response to mechanical stimulus	2.11E-03
37	GO:0030488: tRNA methylation	2.11E-03
38	GO:0009088: threonine biosynthetic process	2.11E-03
39	GO:0031930: mitochondria-nucleus signaling pathway	2.11E-03
40	GO:0009451: RNA modification	2.44E-03
41	GO:0010098: suspensor development	2.48E-03
42	GO:0015693: magnesium ion transport	2.48E-03
43	GO:0030497: fatty acid elongation	2.48E-03
44	GO:0007166: cell surface receptor signaling pathway	2.80E-03
45	GO:0010439: regulation of glucosinolate biosynthetic process	2.88E-03
46	GO:0001522: pseudouridine synthesis	2.88E-03
47	GO:2000070: regulation of response to water deprivation	2.88E-03
48	GO:0000105: histidine biosynthetic process	2.88E-03
49	GO:0009819: drought recovery	2.88E-03
50	GO:0046620: regulation of organ growth	2.88E-03
51	GO:0006865: amino acid transport	3.25E-03
52	GO:0071482: cellular response to light stimulus	3.29E-03
53	GO:0009657: plastid organization	3.29E-03
54	GO:0048507: meristem development	3.72E-03
55	GO:0009658: chloroplast organization	4.12E-03
56	GO:0009098: leucine biosynthetic process	4.17E-03
57	GO:0009086: methionine biosynthetic process	4.17E-03
58	GO:0006298: mismatch repair	4.64E-03
59	GO:0010192: mucilage biosynthetic process	4.64E-03
60	GO:0009089: lysine biosynthetic process via diaminopimelate	5.12E-03
61	GO:0043085: positive regulation of catalytic activity	5.12E-03
62	GO:0009682: induced systemic resistance	5.12E-03
63	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.62E-03
64	GO:0030048: actin filament-based movement	6.14E-03
65	GO:0010588: cotyledon vascular tissue pattern formation	6.14E-03
66	GO:0010020: chloroplast fission	6.67E-03
67	GO:0045454: cell redox homeostasis	6.79E-03
68	GO:0009833: plant-type primary cell wall biogenesis	7.79E-03
69	GO:0000162: tryptophan biosynthetic process	7.79E-03
70	GO:0051017: actin filament bundle assembly	8.38E-03
71	GO:0010082: regulation of root meristem growth	1.09E-02
72	GO:0009625: response to insect	1.09E-02
73	GO:0010584: pollen exine formation	1.15E-02
74	GO:0009790: embryo development	1.23E-02
75	GO:0080022: primary root development	1.29E-02
76	GO:0010087: phloem or xylem histogenesis	1.29E-02
77	GO:0006662: glycerol ether metabolic process	1.36E-02
78	GO:0010182: sugar mediated signaling pathway	1.36E-02
79	GO:0010583: response to cyclopentenone	1.65E-02
80	GO:0010090: trichome morphogenesis	1.73E-02
81	GO:0006468: protein phosphorylation	1.84E-02
82	GO:0007267: cell-cell signaling	1.89E-02
83	GO:0051607: defense response to virus	1.97E-02
84	GO:0009615: response to virus	2.05E-02
85	GO:0030244: cellulose biosynthetic process	2.47E-02
86	GO:0009832: plant-type cell wall biogenesis	2.56E-02
87	GO:0009910: negative regulation of flower development	2.74E-02
88	GO:0009631: cold acclimation	2.74E-02
89	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.89E-02
90	GO:0009867: jasmonic acid mediated signaling pathway	2.93E-02
91	GO:0034599: cellular response to oxidative stress	3.02E-02
92	GO:0006839: mitochondrial transport	3.21E-02
93	GO:0006897: endocytosis	3.31E-02
94	GO:0009926: auxin polar transport	3.51E-02
95	GO:0009640: photomorphogenesis	3.51E-02
96	GO:0042546: cell wall biogenesis	3.61E-02
97	GO:0009644: response to high light intensity	3.71E-02
98	GO:0009636: response to toxic substance	3.81E-02
99	GO:0009965: leaf morphogenesis	3.81E-02
100	GO:0048364: root development	4.28E-02
101	GO:0009793: embryo development ending in seed dormancy	4.33E-02
102	GO:0048367: shoot system development	4.99E-02
103	GO:0048316: seed development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0015267: channel activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0001872: (1->3)-beta-D-glucan binding	1.08E-05
7	GO:0004519: endonuclease activity	6.27E-05
8	GO:0003723: RNA binding	1.03E-04
9	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.60E-04
10	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.60E-04
11	GO:0004160: dihydroxy-acid dehydratase activity	1.60E-04
12	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.65E-04
13	GO:0008805: carbon-monoxide oxygenase activity	3.65E-04
14	GO:0004826: phenylalanine-tRNA ligase activity	3.65E-04
15	GO:0004412: homoserine dehydrogenase activity	3.65E-04
16	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	3.65E-04
17	GO:0050736: O-malonyltransferase activity	3.65E-04
18	GO:1901981: phosphatidylinositol phosphate binding	3.65E-04
19	GO:0016805: dipeptidase activity	5.97E-04
20	GO:0004180: carboxypeptidase activity	5.97E-04
21	GO:0052656: L-isoleucine transaminase activity	8.53E-04
22	GO:0052654: L-leucine transaminase activity	8.53E-04
23	GO:0052655: L-valine transaminase activity	8.53E-04
24	GO:0004072: aspartate kinase activity	8.53E-04
25	GO:0016836: hydro-lyase activity	1.13E-03
26	GO:0004084: branched-chain-amino-acid transaminase activity	1.13E-03
27	GO:0015035: protein disulfide oxidoreductase activity	1.23E-03
28	GO:0030983: mismatched DNA binding	1.76E-03
29	GO:0004709: MAP kinase kinase kinase activity	1.76E-03
30	GO:0016832: aldehyde-lyase activity	2.11E-03
31	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.17E-03
32	GO:0030247: polysaccharide binding	2.43E-03
33	GO:0003746: translation elongation factor activity	3.40E-03
34	GO:0008047: enzyme activator activity	4.64E-03
35	GO:0000049: tRNA binding	5.62E-03
36	GO:0015095: magnesium ion transmembrane transporter activity	6.14E-03
37	GO:0009982: pseudouridine synthase activity	6.14E-03
38	GO:0015266: protein channel activity	6.14E-03
39	GO:0015171: amino acid transmembrane transporter activity	6.51E-03
40	GO:0003774: motor activity	6.67E-03
41	GO:0008266: poly(U) RNA binding	6.67E-03
42	GO:0004871: signal transducer activity	7.21E-03
43	GO:0008061: chitin binding	7.22E-03
44	GO:0016301: kinase activity	7.99E-03
45	GO:0051536: iron-sulfur cluster binding	8.38E-03
46	GO:0003964: RNA-directed DNA polymerase activity	9.59E-03
47	GO:0016760: cellulose synthase (UDP-forming) activity	1.09E-02
48	GO:0047134: protein-disulfide reductase activity	1.22E-02
49	GO:0050662: coenzyme binding	1.43E-02
50	GO:0004791: thioredoxin-disulfide reductase activity	1.43E-02
51	GO:0019901: protein kinase binding	1.50E-02
52	GO:0004518: nuclease activity	1.65E-02
53	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.73E-02
54	GO:0051015: actin filament binding	1.73E-02
55	GO:0016759: cellulose synthase activity	1.81E-02
56	GO:0003684: damaged DNA binding	1.81E-02
57	GO:0005200: structural constituent of cytoskeleton	1.89E-02
58	GO:0016597: amino acid binding	1.97E-02
59	GO:0003729: mRNA binding	2.28E-02
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.47E-02
61	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.60E-02
62	GO:0004222: metalloendopeptidase activity	2.65E-02
63	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.74E-02
64	GO:0003697: single-stranded DNA binding	2.93E-02
65	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.93E-02
66	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.12E-02
67	GO:0050661: NADP binding	3.21E-02
68	GO:0051539: 4 iron, 4 sulfur cluster binding	3.21E-02
69	GO:0043621: protein self-association	3.71E-02
70	GO:0005524: ATP binding	4.37E-02
71	GO:0009055: electron carrier activity	4.40E-02
72	GO:0003777: microtubule motor activity	4.66E-02
73	GO:0003824: catalytic activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0000408: EKC/KEOPS complex	0.00E+00
3	GO:0009507: chloroplast	4.84E-09
4	GO:0032541: cortical endoplasmic reticulum	1.60E-04
5	GO:0009513: etioplast	3.65E-04
6	GO:0031357: integral component of chloroplast inner membrane	3.65E-04
7	GO:0009509: chromoplast	5.97E-04
8	GO:0009570: chloroplast stroma	6.09E-04
9	GO:0015629: actin cytoskeleton	8.67E-04
10	GO:0009898: cytoplasmic side of plasma membrane	1.13E-03
11	GO:0009941: chloroplast envelope	2.20E-03
12	GO:0009501: amyloplast	2.88E-03
13	GO:0016459: myosin complex	4.64E-03
14	GO:0030095: chloroplast photosystem II	6.67E-03
15	GO:0010008: endosome membrane	7.18E-03
16	GO:0005743: mitochondrial inner membrane	8.09E-03
17	GO:0009654: photosystem II oxygen evolving complex	8.97E-03
18	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.15E-02
19	GO:0005759: mitochondrial matrix	1.32E-02
20	GO:0019898: extrinsic component of membrane	1.50E-02
21	GO:0009504: cell plate	1.50E-02
22	GO:0009536: plastid	1.71E-02
23	GO:0046658: anchored component of plasma membrane	1.92E-02
24	GO:0030529: intracellular ribonucleoprotein complex	2.05E-02
25	GO:0009579: thylakoid	2.30E-02
26	GO:0009707: chloroplast outer membrane	2.47E-02
27	GO:0005874: microtubule	2.70E-02
28	GO:0031969: chloroplast membrane	2.79E-02
29	GO:0031977: thylakoid lumen	3.31E-02
30	GO:0005856: cytoskeleton	3.81E-02
31	GO:0005886: plasma membrane	3.87E-02
32	GO:0043231: intracellular membrane-bounded organelle	4.52E-02