co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G32380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
2	GO:0042176: regulation of protein catabolic process	6.91E-06
3	GO:0044376: RNA polymerase II complex import to nucleus	4.88E-05
4	GO:1900424: regulation of defense response to bacterium	4.88E-05
5	GO:0043609: regulation of carbon utilization	4.88E-05
6	GO:0035266: meristem growth	4.88E-05
7	GO:0007292: female gamete generation	4.88E-05
8	GO:1990022: RNA polymerase III complex localization to nucleus	4.88E-05
9	GO:0006511: ubiquitin-dependent protein catabolic process	8.13E-05
10	GO:0009225: nucleotide-sugar metabolic process	9.42E-05
11	GO:0050688: regulation of defense response to virus	1.20E-04
12	GO:0006597: spermine biosynthetic process	1.20E-04
13	GO:0031538: negative regulation of anthocyanin metabolic process	1.20E-04
14	GO:0042853: L-alanine catabolic process	1.20E-04
15	GO:0051788: response to misfolded protein	1.20E-04
16	GO:0030433: ubiquitin-dependent ERAD pathway	1.63E-04
17	GO:0010253: UDP-rhamnose biosynthetic process	2.06E-04
18	GO:0060968: regulation of gene silencing	2.06E-04
19	GO:0009790: embryo development	2.55E-04
20	GO:0048577: negative regulation of short-day photoperiodism, flowering	3.01E-04
21	GO:0043967: histone H4 acetylation	3.01E-04
22	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	3.01E-04
23	GO:0071329: cellular response to sucrose stimulus	3.01E-04
24	GO:0030163: protein catabolic process	3.54E-04
25	GO:0033320: UDP-D-xylose biosynthetic process	4.04E-04
26	GO:0006596: polyamine biosynthetic process	6.29E-04
27	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	6.29E-04
28	GO:0048827: phyllome development	6.29E-04
29	GO:0048232: male gamete generation	6.29E-04
30	GO:0043248: proteasome assembly	6.29E-04
31	GO:0042732: D-xylose metabolic process	6.29E-04
32	GO:0010315: auxin efflux	6.29E-04
33	GO:0043966: histone H3 acetylation	7.50E-04
34	GO:0006401: RNA catabolic process	8.75E-04
35	GO:0006368: transcription elongation from RNA polymerase II promoter	8.75E-04
36	GO:0006744: ubiquinone biosynthetic process	8.75E-04
37	GO:0000338: protein deneddylation	8.75E-04
38	GO:0010078: maintenance of root meristem identity	1.01E-03
39	GO:0010928: regulation of auxin mediated signaling pathway	1.01E-03
40	GO:0035265: organ growth	1.01E-03
41	GO:0010100: negative regulation of photomorphogenesis	1.14E-03
42	GO:0030968: endoplasmic reticulum unfolded protein response	1.14E-03
43	GO:0015996: chlorophyll catabolic process	1.14E-03
44	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.28E-03
45	GO:2000024: regulation of leaf development	1.28E-03
46	GO:0043067: regulation of programmed cell death	1.43E-03
47	GO:0048829: root cap development	1.59E-03
48	GO:0051555: flavonol biosynthetic process	1.59E-03
49	GO:0072593: reactive oxygen species metabolic process	1.75E-03
50	GO:0046856: phosphatidylinositol dephosphorylation	1.75E-03
51	GO:0010015: root morphogenesis	1.75E-03
52	GO:0006913: nucleocytoplasmic transport	1.75E-03
53	GO:0055046: microgametogenesis	2.08E-03
54	GO:0009933: meristem structural organization	2.26E-03
55	GO:0034605: cellular response to heat	2.26E-03
56	GO:0009058: biosynthetic process	2.27E-03
57	GO:0090351: seedling development	2.44E-03
58	GO:0034976: response to endoplasmic reticulum stress	2.62E-03
59	GO:0008299: isoprenoid biosynthetic process	3.01E-03
60	GO:0007275: multicellular organism development	3.05E-03
61	GO:0006366: transcription from RNA polymerase II promoter	3.20E-03
62	GO:0006457: protein folding	3.34E-03
63	GO:0006470: protein dephosphorylation	3.37E-03
64	GO:0042127: regulation of cell proliferation	3.82E-03
65	GO:0008284: positive regulation of cell proliferation	4.04E-03
66	GO:0010118: stomatal movement	4.26E-03
67	GO:0016032: viral process	5.42E-03
68	GO:0001666: response to hypoxia	6.67E-03
69	GO:0009651: response to salt stress	6.86E-03
70	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	6.94E-03
71	GO:0048573: photoperiodism, flowering	7.48E-03
72	GO:0010311: lateral root formation	8.31E-03
73	GO:0009408: response to heat	8.31E-03
74	GO:0006499: N-terminal protein myristoylation	8.60E-03
75	GO:0010043: response to zinc ion	8.88E-03
76	GO:0009910: negative regulation of flower development	8.88E-03
77	GO:0045087: innate immune response	9.47E-03
78	GO:0009640: photomorphogenesis	1.13E-02
79	GO:0008283: cell proliferation	1.13E-02
80	GO:0051707: response to other organism	1.13E-02
81	GO:0000209: protein polyubiquitination	1.16E-02
82	GO:0009965: leaf morphogenesis	1.23E-02
83	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.30E-02
84	GO:0000165: MAPK cascade	1.30E-02
85	GO:0009585: red, far-red light phototransduction	1.40E-02
86	GO:0009738: abscisic acid-activated signaling pathway	1.43E-02
87	GO:0051603: proteolysis involved in cellular protein catabolic process	1.43E-02
88	GO:0009555: pollen development	1.48E-02
89	GO:0009737: response to abscisic acid	1.54E-02
90	GO:0048316: seed development	1.61E-02
91	GO:0048367: shoot system development	1.61E-02
92	GO:0010150: leaf senescence	2.65E-02
93	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.87E-02
94	GO:0009414: response to water deprivation	2.93E-02
95	GO:0009617: response to bacterium	3.00E-02
96	GO:0071555: cell wall organization	3.00E-02
97	GO:0042742: defense response to bacterium	3.00E-02
98	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.42E-02
99	GO:0009658: chloroplast organization	3.61E-02
100	GO:0015031: protein transport	3.81E-02
101	GO:0009860: pollen tube growth	3.81E-02
102	GO:0045454: cell redox homeostasis	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0030234: enzyme regulator activity	4.42E-05
2	GO:0019784: NEDD8-specific protease activity	4.88E-05
3	GO:0102293: pheophytinase b activity	4.88E-05
4	GO:0043813: phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity	4.88E-05
5	GO:0016768: spermine synthase activity	4.88E-05
6	GO:1990381: ubiquitin-specific protease binding	4.88E-05
7	GO:0050377: UDP-glucose 4,6-dehydratase activity	1.20E-04
8	GO:0047746: chlorophyllase activity	1.20E-04
9	GO:0008460: dTDP-glucose 4,6-dehydratase activity	1.20E-04
10	GO:0004766: spermidine synthase activity	1.20E-04
11	GO:0010280: UDP-L-rhamnose synthase activity	1.20E-04
12	GO:0050347: trans-octaprenyltranstransferase activity	1.20E-04
13	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	1.20E-04
14	GO:0004298: threonine-type endopeptidase activity	1.48E-04
15	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	3.01E-04
16	GO:0016887: ATPase activity	3.05E-04
17	GO:0000993: RNA polymerase II core binding	4.04E-04
18	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	4.04E-04
19	GO:0004659: prenyltransferase activity	4.04E-04
20	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	6.29E-04
21	GO:0036402: proteasome-activating ATPase activity	6.29E-04
22	GO:0048040: UDP-glucuronate decarboxylase activity	6.29E-04
23	GO:0070403: NAD+ binding	7.50E-04
24	GO:0003950: NAD+ ADP-ribosyltransferase activity	7.50E-04
25	GO:0051082: unfolded protein binding	1.73E-03
26	GO:0004161: dimethylallyltranstransferase activity	1.75E-03
27	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.91E-03
28	GO:0004175: endopeptidase activity	2.26E-03
29	GO:0017025: TBP-class protein binding	2.44E-03
30	GO:0004867: serine-type endopeptidase inhibitor activity	2.44E-03
31	GO:0004725: protein tyrosine phosphatase activity	2.62E-03
32	GO:0001046: core promoter sequence-specific DNA binding	2.81E-03
33	GO:0003756: protein disulfide isomerase activity	3.82E-03
34	GO:0004402: histone acetyltransferase activity	4.26E-03
35	GO:0016853: isomerase activity	4.71E-03
36	GO:0004518: nuclease activity	5.42E-03
37	GO:0004722: protein serine/threonine phosphatase activity	7.39E-03
38	GO:0004721: phosphoprotein phosphatase activity	7.48E-03
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	8.03E-03
40	GO:0005096: GTPase activator activity	8.31E-03
41	GO:0004222: metalloendopeptidase activity	8.60E-03
42	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	8.88E-03
43	GO:0004650: polygalacturonase activity	1.68E-02
44	GO:0016829: lyase activity	2.23E-02
45	GO:0030170: pyridoxal phosphate binding	2.27E-02
46	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.31E-02
47	GO:0003824: catalytic activity	3.29E-02
48	GO:0046983: protein dimerization activity	4.00E-02
49	GO:0050660: flavin adenine dinucleotide binding	4.01E-02
50	GO:0008233: peptidase activity	4.16E-02
51	GO:0003729: mRNA binding	4.45E-02

Rank	GO Term	Adjusted P value
1	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
2	GO:0033106: cis-Golgi network membrane	0.00E+00
3	GO:0000502: proteasome complex	1.03E-09
4	GO:0008540: proteasome regulatory particle, base subcomplex	3.66E-05
5	GO:0008023: transcription elongation factor complex	4.88E-05
6	GO:0000836: Hrd1p ubiquitin ligase complex	4.88E-05
7	GO:0044322: endoplasmic reticulum quality control compartment	4.88E-05
8	GO:0005839: proteasome core complex	1.48E-04
9	GO:0036513: Derlin-1 retrotranslocation complex	3.01E-04
10	GO:0033588: Elongator holoenzyme complex	3.01E-04
11	GO:0005788: endoplasmic reticulum lumen	4.74E-04
12	GO:0000813: ESCRT I complex	5.13E-04
13	GO:0031597: cytosolic proteasome complex	7.50E-04
14	GO:0031595: nuclear proteasome complex	8.75E-04
15	GO:0000123: histone acetyltransferase complex	8.75E-04
16	GO:0000326: protein storage vacuole	1.14E-03
17	GO:0019773: proteasome core complex, alpha-subunit complex	1.14E-03
18	GO:0008180: COP9 signalosome	1.28E-03
19	GO:0008541: proteasome regulatory particle, lid subcomplex	1.75E-03
20	GO:0043234: protein complex	2.62E-03
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.82E-03
22	GO:0031965: nuclear membrane	4.94E-03
23	GO:0016592: mediator complex	5.42E-03
24	GO:0005783: endoplasmic reticulum	5.91E-03
25	GO:0005829: cytosol	6.79E-03
26	GO:0005819: spindle	1.01E-02
27	GO:0005635: nuclear envelope	1.47E-02
28	GO:0009524: phragmoplast	2.18E-02
29	GO:0005615: extracellular space	2.87E-02
30	GO:0009536: plastid	3.68E-02
31	GO:0009505: plant-type cell wall	3.75E-02
32	GO:0005886: plasma membrane	3.91E-02
33	GO:0005874: microtubule	4.11E-02
34	GO:0031969: chloroplast membrane	4.21E-02