co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G32060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090279: regulation of calcium ion import	0.00E+00
2	GO:0008298: intracellular mRNA localization	0.00E+00
3	GO:0071474: cellular hyperosmotic response	0.00E+00
4	GO:0009854: oxidative photosynthetic carbon pathway	2.20E-05
5	GO:0071482: cellular response to light stimulus	5.02E-05
6	GO:0031426: polycistronic mRNA processing	7.90E-05
7	GO:1904966: positive regulation of vitamin E biosynthetic process	7.90E-05
8	GO:0000481: maturation of 5S rRNA	7.90E-05
9	GO:1904964: positive regulation of phytol biosynthetic process	7.90E-05
10	GO:0042371: vitamin K biosynthetic process	7.90E-05
11	GO:0071461: cellular response to redox state	7.90E-05
12	GO:0034337: RNA folding	7.90E-05
13	GO:0010362: negative regulation of anion channel activity by blue light	7.90E-05
14	GO:0051775: response to redox state	7.90E-05
15	GO:0043085: positive regulation of catalytic activity	1.08E-04
16	GO:0009767: photosynthetic electron transport chain	1.45E-04
17	GO:0080005: photosystem stoichiometry adjustment	1.89E-04
18	GO:0010541: acropetal auxin transport	1.89E-04
19	GO:0010155: regulation of proton transport	1.89E-04
20	GO:0051262: protein tetramerization	1.89E-04
21	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.89E-04
22	GO:0005977: glycogen metabolic process	3.17E-04
23	GO:0010160: formation of animal organ boundary	3.17E-04
24	GO:0010731: protein glutathionylation	4.58E-04
25	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	4.58E-04
26	GO:2001141: regulation of RNA biosynthetic process	4.58E-04
27	GO:0006107: oxaloacetate metabolic process	4.58E-04
28	GO:0010239: chloroplast mRNA processing	4.58E-04
29	GO:0043481: anthocyanin accumulation in tissues in response to UV light	4.58E-04
30	GO:2000122: negative regulation of stomatal complex development	6.09E-04
31	GO:0006546: glycine catabolic process	6.09E-04
32	GO:0006021: inositol biosynthetic process	6.09E-04
33	GO:0006734: NADH metabolic process	6.09E-04
34	GO:0010021: amylopectin biosynthetic process	6.09E-04
35	GO:0010037: response to carbon dioxide	6.09E-04
36	GO:0015976: carbon utilization	6.09E-04
37	GO:0009765: photosynthesis, light harvesting	6.09E-04
38	GO:0006109: regulation of carbohydrate metabolic process	6.09E-04
39	GO:0009904: chloroplast accumulation movement	7.72E-04
40	GO:0060918: auxin transport	9.42E-04
41	GO:0050665: hydrogen peroxide biosynthetic process	9.42E-04
42	GO:0046855: inositol phosphate dephosphorylation	9.42E-04
43	GO:0015995: chlorophyll biosynthetic process	9.59E-04
44	GO:0018298: protein-chromophore linkage	1.06E-03
45	GO:0009903: chloroplast avoidance movement	1.12E-03
46	GO:0010019: chloroplast-nucleus signaling pathway	1.12E-03
47	GO:0010119: regulation of stomatal movement	1.21E-03
48	GO:0005975: carbohydrate metabolic process	1.26E-03
49	GO:0009637: response to blue light	1.32E-03
50	GO:0009690: cytokinin metabolic process	1.51E-03
51	GO:0032508: DNA duplex unwinding	1.51E-03
52	GO:0010204: defense response signaling pathway, resistance gene-independent	1.72E-03
53	GO:0032544: plastid translation	1.72E-03
54	GO:0017004: cytochrome complex assembly	1.72E-03
55	GO:0006754: ATP biosynthetic process	1.95E-03
56	GO:0009051: pentose-phosphate shunt, oxidative branch	1.95E-03
57	GO:0048507: meristem development	1.95E-03
58	GO:0009638: phototropism	2.18E-03
59	GO:0019684: photosynthesis, light reaction	2.66E-03
60	GO:0009089: lysine biosynthetic process via diaminopimelate	2.66E-03
61	GO:0006352: DNA-templated transcription, initiation	2.66E-03
62	GO:0008361: regulation of cell size	2.92E-03
63	GO:0006790: sulfur compound metabolic process	2.92E-03
64	GO:0006108: malate metabolic process	3.18E-03
65	GO:0009785: blue light signaling pathway	3.18E-03
66	GO:0010207: photosystem II assembly	3.45E-03
67	GO:0010540: basipetal auxin transport	3.45E-03
68	GO:0019853: L-ascorbic acid biosynthetic process	3.73E-03
69	GO:0046854: phosphatidylinositol phosphorylation	3.73E-03
70	GO:0042343: indole glucosinolate metabolic process	3.73E-03
71	GO:0006833: water transport	4.02E-03
72	GO:0007017: microtubule-based process	4.61E-03
73	GO:0098542: defense response to other organism	4.92E-03
74	GO:0006413: translational initiation	5.15E-03
75	GO:0019748: secondary metabolic process	5.24E-03
76	GO:0048443: stamen development	5.89E-03
77	GO:0034220: ion transmembrane transport	6.57E-03
78	GO:0042631: cellular response to water deprivation	6.57E-03
79	GO:0009958: positive gravitropism	6.92E-03
80	GO:0006520: cellular amino acid metabolic process	6.92E-03
81	GO:0006662: glycerol ether metabolic process	6.92E-03
82	GO:0055114: oxidation-reduction process	6.98E-03
83	GO:0055085: transmembrane transport	7.29E-03
84	GO:0019252: starch biosynthetic process	7.64E-03
85	GO:0009791: post-embryonic development	7.64E-03
86	GO:0032502: developmental process	8.39E-03
87	GO:0009639: response to red or far red light	9.16E-03
88	GO:0009627: systemic acquired resistance	1.12E-02
89	GO:0015979: photosynthesis	1.21E-02
90	GO:0016311: dephosphorylation	1.21E-02
91	GO:0000160: phosphorelay signal transduction system	1.29E-02
92	GO:0010218: response to far red light	1.34E-02
93	GO:0006811: ion transport	1.34E-02
94	GO:0048527: lateral root development	1.38E-02
95	GO:0009853: photorespiration	1.48E-02
96	GO:0034599: cellular response to oxidative stress	1.52E-02
97	GO:0006099: tricarboxylic acid cycle	1.52E-02
98	GO:0009926: auxin polar transport	1.77E-02
99	GO:0009640: photomorphogenesis	1.77E-02
100	GO:0009636: response to toxic substance	1.92E-02
101	GO:0009409: response to cold	1.94E-02
102	GO:0006810: transport	2.15E-02
103	GO:0051603: proteolysis involved in cellular protein catabolic process	2.24E-02
104	GO:0043086: negative regulation of catalytic activity	2.46E-02
105	GO:0007623: circadian rhythm	4.14E-02
106	GO:0045490: pectin catabolic process	4.14E-02
107	GO:0010468: regulation of gene expression	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
3	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0008465: glycerate dehydrogenase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
7	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
8	GO:0019899: enzyme binding	3.00E-05
9	GO:0008746: NAD(P)+ transhydrogenase activity	7.90E-05
10	GO:0004328: formamidase activity	7.90E-05
11	GO:0010347: L-galactose-1-phosphate phosphatase activity	7.90E-05
12	GO:0046906: tetrapyrrole binding	7.90E-05
13	GO:0005227: calcium activated cation channel activity	7.90E-05
14	GO:0003993: acid phosphatase activity	1.09E-04
15	GO:0019156: isoamylase activity	1.89E-04
16	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.89E-04
17	GO:0004047: aminomethyltransferase activity	1.89E-04
18	GO:0052832: inositol monophosphate 3-phosphatase activity	1.89E-04
19	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.89E-04
20	GO:0008934: inositol monophosphate 1-phosphatase activity	1.89E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	1.89E-04
22	GO:0016491: oxidoreductase activity	2.03E-04
23	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	4.58E-04
24	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	4.58E-04
25	GO:0009882: blue light photoreceptor activity	4.58E-04
26	GO:0017057: 6-phosphogluconolactonase activity	4.58E-04
27	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	4.58E-04
28	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	4.58E-04
29	GO:0048027: mRNA 5'-UTR binding	4.58E-04
30	GO:0010181: FMN binding	5.04E-04
31	GO:0008891: glycolate oxidase activity	6.09E-04
32	GO:0001053: plastid sigma factor activity	6.09E-04
33	GO:0016987: sigma factor activity	6.09E-04
34	GO:0043495: protein anchor	6.09E-04
35	GO:0004556: alpha-amylase activity	9.42E-04
36	GO:0016615: malate dehydrogenase activity	9.42E-04
37	GO:0000293: ferric-chelate reductase activity	9.42E-04
38	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.12E-03
39	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.12E-03
40	GO:0030060: L-malate dehydrogenase activity	1.12E-03
41	GO:0005261: cation channel activity	1.12E-03
42	GO:0004185: serine-type carboxypeptidase activity	1.70E-03
43	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.95E-03
44	GO:0008047: enzyme activator activity	2.41E-03
45	GO:0004089: carbonate dehydratase activity	3.18E-03
46	GO:0000155: phosphorelay sensor kinase activity	3.18E-03
47	GO:0004565: beta-galactosidase activity	3.18E-03
48	GO:0010329: auxin efflux transmembrane transporter activity	3.18E-03
49	GO:0003824: catalytic activity	3.33E-03
50	GO:0008266: poly(U) RNA binding	3.45E-03
51	GO:0004857: enzyme inhibitor activity	4.31E-03
52	GO:0005528: FK506 binding	4.31E-03
53	GO:0030570: pectate lyase activity	5.56E-03
54	GO:0022891: substrate-specific transmembrane transporter activity	5.56E-03
55	GO:0047134: protein-disulfide reductase activity	6.22E-03
56	GO:0008080: N-acetyltransferase activity	6.92E-03
57	GO:0042802: identical protein binding	7.02E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	7.28E-03
59	GO:0048038: quinone binding	8.01E-03
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.77E-03
61	GO:0005200: structural constituent of cytoskeleton	9.56E-03
62	GO:0008483: transaminase activity	9.56E-03
63	GO:0015250: water channel activity	1.04E-02
64	GO:0016168: chlorophyll binding	1.08E-02
65	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.38E-02
66	GO:0004364: glutathione transferase activity	1.72E-02
67	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.97E-02
68	GO:0051287: NAD binding	2.02E-02
69	GO:0003729: mRNA binding	2.18E-02
70	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.19E-02
71	GO:0016887: ATPase activity	2.44E-02
72	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.52E-02
73	GO:0015035: protein disulfide oxidoreductase activity	2.87E-02
74	GO:0016829: lyase activity	3.49E-02
75	GO:0003743: translation initiation factor activity	4.63E-02
76	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.14E-14
2	GO:0009535: chloroplast thylakoid membrane	2.25E-06
3	GO:0009570: chloroplast stroma	3.25E-06
4	GO:0009344: nitrite reductase complex [NAD(P)H]	7.90E-05
5	GO:0009534: chloroplast thylakoid	2.37E-04
6	GO:0005773: vacuole	2.65E-04
7	GO:0048046: apoplast	4.24E-04
8	GO:0009543: chloroplast thylakoid lumen	4.76E-04
9	GO:0009898: cytoplasmic side of plasma membrane	6.09E-04
10	GO:0009941: chloroplast envelope	7.52E-04
11	GO:0009579: thylakoid	1.30E-03
12	GO:0009986: cell surface	1.31E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.95E-03
14	GO:0042644: chloroplast nucleoid	1.95E-03
15	GO:0045298: tubulin complex	1.95E-03
16	GO:0032040: small-subunit processome	2.92E-03
17	GO:0030095: chloroplast photosystem II	3.45E-03
18	GO:0042651: thylakoid membrane	4.61E-03
19	GO:0009654: photosystem II oxygen evolving complex	4.61E-03
20	GO:0005777: peroxisome	6.42E-03
21	GO:0009522: photosystem I	7.28E-03
22	GO:0009523: photosystem II	7.64E-03
23	GO:0019898: extrinsic component of membrane	7.64E-03
24	GO:0010319: stromule	9.56E-03
25	GO:0031969: chloroplast membrane	1.06E-02
26	GO:0031977: thylakoid lumen	1.67E-02
27	GO:0009505: plant-type cell wall	1.76E-02
28	GO:0005618: cell wall	2.31E-02