co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G31800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905177: tracheary element differentiation	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
4	GO:0070979: protein K11-linked ubiquitination	0.00E+00
5	GO:2000505: regulation of energy homeostasis	0.00E+00
6	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0045038: protein import into chloroplast thylakoid membrane	2.93E-05
9	GO:0000012: single strand break repair	1.50E-04
10	GO:0043266: regulation of potassium ion transport	1.50E-04
11	GO:0010080: regulation of floral meristem growth	1.50E-04
12	GO:2000021: regulation of ion homeostasis	1.50E-04
13	GO:0015969: guanosine tetraphosphate metabolic process	1.50E-04
14	GO:0051775: response to redox state	1.50E-04
15	GO:0000373: Group II intron splicing	1.63E-04
16	GO:1900871: chloroplast mRNA modification	3.42E-04
17	GO:0010207: photosystem II assembly	4.00E-04
18	GO:0031145: anaphase-promoting complex-dependent catabolic process	5.61E-04
19	GO:0010623: programmed cell death involved in cell development	5.61E-04
20	GO:0006696: ergosterol biosynthetic process	5.61E-04
21	GO:0005977: glycogen metabolic process	5.61E-04
22	GO:0010581: regulation of starch biosynthetic process	5.61E-04
23	GO:0010022: meristem determinacy	5.61E-04
24	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	5.61E-04
25	GO:0009226: nucleotide-sugar biosynthetic process	8.03E-04
26	GO:1901332: negative regulation of lateral root development	8.03E-04
27	GO:2001141: regulation of RNA biosynthetic process	8.03E-04
28	GO:0030071: regulation of mitotic metaphase/anaphase transition	8.03E-04
29	GO:0006107: oxaloacetate metabolic process	8.03E-04
30	GO:0042989: sequestering of actin monomers	8.03E-04
31	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.27E-04
32	GO:0006734: NADH metabolic process	1.06E-03
33	GO:0010021: amylopectin biosynthetic process	1.06E-03
34	GO:0051781: positive regulation of cell division	1.06E-03
35	GO:0048442: sepal development	1.06E-03
36	GO:0051322: anaphase	1.06E-03
37	GO:0006661: phosphatidylinositol biosynthetic process	1.06E-03
38	GO:0010508: positive regulation of autophagy	1.06E-03
39	GO:0031122: cytoplasmic microtubule organization	1.06E-03
40	GO:0009793: embryo development ending in seed dormancy	1.11E-03
41	GO:0030041: actin filament polymerization	1.35E-03
42	GO:0009107: lipoate biosynthetic process	1.35E-03
43	GO:0032876: negative regulation of DNA endoreduplication	1.35E-03
44	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.65E-03
45	GO:0006655: phosphatidylglycerol biosynthetic process	1.65E-03
46	GO:0010076: maintenance of floral meristem identity	1.98E-03
47	GO:0006400: tRNA modification	2.33E-03
48	GO:0051510: regulation of unidimensional cell growth	2.33E-03
49	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	2.33E-03
50	GO:0006605: protein targeting	2.70E-03
51	GO:0032875: regulation of DNA endoreduplication	2.70E-03
52	GO:0010492: maintenance of shoot apical meristem identity	2.70E-03
53	GO:0048564: photosystem I assembly	2.70E-03
54	GO:0042255: ribosome assembly	2.70E-03
55	GO:0006353: DNA-templated transcription, termination	2.70E-03
56	GO:0032544: plastid translation	3.08E-03
57	GO:0071482: cellular response to light stimulus	3.08E-03
58	GO:0009657: plastid organization	3.08E-03
59	GO:0019430: removal of superoxide radicals	3.08E-03
60	GO:0010206: photosystem II repair	3.49E-03
61	GO:0048507: meristem development	3.49E-03
62	GO:0009658: chloroplast organization	3.65E-03
63	GO:0010380: regulation of chlorophyll biosynthetic process	3.91E-03
64	GO:0019538: protein metabolic process	4.35E-03
65	GO:0048441: petal development	4.35E-03
66	GO:0043085: positive regulation of catalytic activity	4.80E-03
67	GO:0006352: DNA-templated transcription, initiation	4.80E-03
68	GO:0006415: translational termination	4.80E-03
69	GO:0016024: CDP-diacylglycerol biosynthetic process	5.27E-03
70	GO:0045037: protein import into chloroplast stroma	5.27E-03
71	GO:0010582: floral meristem determinacy	5.27E-03
72	GO:0006108: malate metabolic process	5.75E-03
73	GO:0005975: carbohydrate metabolic process	5.89E-03
74	GO:0006302: double-strand break repair	6.25E-03
75	GO:0048440: carpel development	6.25E-03
76	GO:0090351: seedling development	6.77E-03
77	GO:0007010: cytoskeleton organization	7.84E-03
78	GO:0008299: isoprenoid biosynthetic process	8.40E-03
79	GO:0010431: seed maturation	8.97E-03
80	GO:0031348: negative regulation of defense response	9.56E-03
81	GO:0009306: protein secretion	1.08E-02
82	GO:0010089: xylem development	1.08E-02
83	GO:0048443: stamen development	1.08E-02
84	GO:0019722: calcium-mediated signaling	1.08E-02
85	GO:0016117: carotenoid biosynthetic process	1.14E-02
86	GO:0008033: tRNA processing	1.20E-02
87	GO:0010087: phloem or xylem histogenesis	1.20E-02
88	GO:0010268: brassinosteroid homeostasis	1.27E-02
89	GO:0045489: pectin biosynthetic process	1.27E-02
90	GO:0019252: starch biosynthetic process	1.41E-02
91	GO:0008654: phospholipid biosynthetic process	1.41E-02
92	GO:0016132: brassinosteroid biosynthetic process	1.47E-02
93	GO:0032502: developmental process	1.55E-02
94	GO:0016125: sterol metabolic process	1.69E-02
95	GO:0007267: cell-cell signaling	1.76E-02
96	GO:0000910: cytokinesis	1.84E-02
97	GO:0010027: thylakoid membrane organization	1.92E-02
98	GO:0016126: sterol biosynthetic process	1.92E-02
99	GO:0010029: regulation of seed germination	1.99E-02
100	GO:0016311: dephosphorylation	2.23E-02
101	GO:0010311: lateral root formation	2.40E-02
102	GO:0007568: aging	2.56E-02
103	GO:0048527: lateral root development	2.56E-02
104	GO:0045087: innate immune response	2.74E-02
105	GO:0009637: response to blue light	2.74E-02
106	GO:0006099: tricarboxylic acid cycle	2.83E-02
107	GO:0010114: response to red light	3.28E-02
108	GO:0008283: cell proliferation	3.28E-02
109	GO:0042546: cell wall biogenesis	3.37E-02
110	GO:0009644: response to high light intensity	3.47E-02
111	GO:0006629: lipid metabolic process	3.74E-02
112	GO:0000165: MAPK cascade	3.76E-02
113	GO:0042538: hyperosmotic salinity response	3.85E-02
114	GO:0006397: mRNA processing	3.90E-02
115	GO:0006364: rRNA processing	4.05E-02
116	GO:0006417: regulation of translation	4.36E-02
117	GO:0006096: glycolytic process	4.56E-02
118	GO:0048316: seed development	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0050613: delta14-sterol reductase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
7	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
8	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
9	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
12	GO:0043022: ribosome binding	1.06E-04
13	GO:0008568: microtubule-severing ATPase activity	1.50E-04
14	GO:0008746: NAD(P)+ transhydrogenase activity	1.50E-04
15	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.50E-04
16	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.50E-04
17	GO:0051996: squalene synthase activity	1.50E-04
18	GO:0019156: isoamylase activity	3.42E-04
19	GO:0008728: GTP diphosphokinase activity	3.42E-04
20	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.42E-04
21	GO:0080041: ADP-ribose pyrophosphohydrolase activity	3.42E-04
22	GO:0048531: beta-1,3-galactosyltransferase activity	3.42E-04
23	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.00E-04
24	GO:0070402: NADPH binding	5.61E-04
25	GO:0016992: lipoate synthase activity	5.61E-04
26	GO:0016149: translation release factor activity, codon specific	8.03E-04
27	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	8.03E-04
28	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.06E-03
29	GO:0001053: plastid sigma factor activity	1.06E-03
30	GO:0016987: sigma factor activity	1.06E-03
31	GO:0003785: actin monomer binding	1.35E-03
32	GO:0004556: alpha-amylase activity	1.65E-03
33	GO:0004462: lactoylglutathione lyase activity	1.65E-03
34	GO:0016615: malate dehydrogenase activity	1.65E-03
35	GO:0005525: GTP binding	1.97E-03
36	GO:0004017: adenylate kinase activity	1.98E-03
37	GO:0030060: L-malate dehydrogenase activity	1.98E-03
38	GO:0008312: 7S RNA binding	2.70E-03
39	GO:0003747: translation release factor activity	3.49E-03
40	GO:0030955: potassium ion binding	3.91E-03
41	GO:0004743: pyruvate kinase activity	3.91E-03
42	GO:0008047: enzyme activator activity	4.35E-03
43	GO:0003690: double-stranded DNA binding	5.54E-03
44	GO:0008081: phosphoric diester hydrolase activity	5.75E-03
45	GO:0031072: heat shock protein binding	5.75E-03
46	GO:0016874: ligase activity	7.17E-03
47	GO:0005528: FK506 binding	7.84E-03
48	GO:0016746: transferase activity, transferring acyl groups	7.84E-03
49	GO:0016787: hydrolase activity	1.07E-02
50	GO:0003727: single-stranded RNA binding	1.08E-02
51	GO:0004527: exonuclease activity	1.27E-02
52	GO:0004791: thioredoxin-disulfide reductase activity	1.34E-02
53	GO:0016853: isomerase activity	1.34E-02
54	GO:0003723: RNA binding	1.53E-02
55	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.62E-02
56	GO:0008236: serine-type peptidase activity	2.23E-02
57	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.31E-02
58	GO:0030145: manganese ion binding	2.56E-02
59	GO:0003697: single-stranded DNA binding	2.74E-02
60	GO:0004871: signal transducer activity	3.18E-02
61	GO:0005509: calcium ion binding	3.56E-02
62	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.66E-02
63	GO:0003924: GTPase activity	3.74E-02
64	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.05E-02
65	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	7.42E-25
3	GO:0009570: chloroplast stroma	3.06E-09
4	GO:0009535: chloroplast thylakoid membrane	1.72E-07
5	GO:0080085: signal recognition particle, chloroplast targeting	1.11E-06
6	GO:0009579: thylakoid	3.77E-05
7	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.33E-04
8	GO:0009543: chloroplast thylakoid lumen	1.40E-03
9	GO:0009941: chloroplast envelope	1.74E-03
10	GO:0030529: intracellular ribonucleoprotein complex	1.88E-03
11	GO:0005680: anaphase-promoting complex	3.49E-03
12	GO:0031977: thylakoid lumen	3.67E-03
13	GO:0016604: nuclear body	3.91E-03
14	GO:0000311: plastid large ribosomal subunit	5.27E-03
15	GO:0009574: preprophase band	5.75E-03
16	GO:0005938: cell cortex	5.75E-03
17	GO:0030176: integral component of endoplasmic reticulum membrane	6.77E-03
18	GO:0042651: thylakoid membrane	8.40E-03
19	GO:0009654: photosystem II oxygen evolving complex	8.40E-03
20	GO:0010287: plastoglobule	9.03E-03
21	GO:0005623: cell	9.80E-03
22	GO:0015629: actin cytoskeleton	1.02E-02
23	GO:0019898: extrinsic component of membrane	1.41E-02
24	GO:0009536: plastid	1.48E-02
25	GO:0046658: anchored component of plasma membrane	1.75E-02
26	GO:0031969: chloroplast membrane	2.54E-02
27	GO:0015934: large ribosomal subunit	2.56E-02
28	GO:0005840: ribosome	4.17E-02
29	GO:0005773: vacuole	4.92E-02