co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G31230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0006573: valine metabolic process	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:1900871: chloroplast mRNA modification	9.54E-06
12	GO:1900865: chloroplast RNA modification	5.93E-05
13	GO:0010239: chloroplast mRNA processing	7.03E-05
14	GO:0009451: RNA modification	1.84E-04
15	GO:0016123: xanthophyll biosynthetic process	1.89E-04
16	GO:0080110: sporopollenin biosynthetic process	1.89E-04
17	GO:0045038: protein import into chloroplast thylakoid membrane	1.89E-04
18	GO:0016554: cytidine to uridine editing	2.68E-04
19	GO:0042372: phylloquinone biosynthetic process	3.59E-04
20	GO:0009082: branched-chain amino acid biosynthetic process	3.59E-04
21	GO:0009099: valine biosynthetic process	3.59E-04
22	GO:0009658: chloroplast organization	4.52E-04
23	GO:2000021: regulation of ion homeostasis	4.64E-04
24	GO:0006436: tryptophanyl-tRNA aminoacylation	4.64E-04
25	GO:0051247: positive regulation of protein metabolic process	4.64E-04
26	GO:0000066: mitochondrial ornithine transport	4.64E-04
27	GO:1902458: positive regulation of stomatal opening	4.64E-04
28	GO:2000905: negative regulation of starch metabolic process	4.64E-04
29	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	4.64E-04
30	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	4.64E-04
31	GO:0051382: kinetochore assembly	4.64E-04
32	GO:0043489: RNA stabilization	4.64E-04
33	GO:0043266: regulation of potassium ion transport	4.64E-04
34	GO:0010080: regulation of floral meristem growth	4.64E-04
35	GO:0006551: leucine metabolic process	4.64E-04
36	GO:0016117: carotenoid biosynthetic process	5.57E-04
37	GO:0048564: photosystem I assembly	5.75E-04
38	GO:0046620: regulation of organ growth	5.75E-04
39	GO:0006353: DNA-templated transcription, termination	5.75E-04
40	GO:2000070: regulation of response to water deprivation	5.75E-04
41	GO:0071482: cellular response to light stimulus	7.02E-04
42	GO:0009657: plastid organization	7.02E-04
43	GO:0009097: isoleucine biosynthetic process	7.02E-04
44	GO:0000373: Group II intron splicing	8.40E-04
45	GO:0009098: leucine biosynthetic process	9.90E-04
46	GO:0001682: tRNA 5'-leader removal	1.00E-03
47	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.00E-03
48	GO:0031297: replication fork processing	1.00E-03
49	GO:0010024: phytochromobilin biosynthetic process	1.00E-03
50	GO:0060359: response to ammonium ion	1.00E-03
51	GO:0048255: mRNA stabilization	1.00E-03
52	GO:0006432: phenylalanyl-tRNA aminoacylation	1.00E-03
53	GO:1900033: negative regulation of trichome patterning	1.00E-03
54	GO:0010582: floral meristem determinacy	1.52E-03
55	GO:0043157: response to cation stress	1.63E-03
56	GO:0045910: negative regulation of DNA recombination	1.63E-03
57	GO:0048586: regulation of long-day photoperiodism, flowering	1.63E-03
58	GO:0006788: heme oxidation	1.63E-03
59	GO:0010022: meristem determinacy	1.63E-03
60	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.63E-03
61	GO:0010623: programmed cell death involved in cell development	1.63E-03
62	GO:0006696: ergosterol biosynthetic process	1.63E-03
63	GO:0010207: photosystem II assembly	1.95E-03
64	GO:0051513: regulation of monopolar cell growth	2.37E-03
65	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.37E-03
66	GO:0051639: actin filament network formation	2.37E-03
67	GO:0019048: modulation by virus of host morphology or physiology	2.37E-03
68	GO:0010306: rhamnogalacturonan II biosynthetic process	2.37E-03
69	GO:0042989: sequestering of actin monomers	2.37E-03
70	GO:0046739: transport of virus in multicellular host	2.37E-03
71	GO:0031048: chromatin silencing by small RNA	2.37E-03
72	GO:1990019: protein storage vacuole organization	2.37E-03
73	GO:2001141: regulation of RNA biosynthetic process	2.37E-03
74	GO:0005992: trehalose biosynthetic process	2.70E-03
75	GO:0009755: hormone-mediated signaling pathway	3.18E-03
76	GO:0048629: trichome patterning	3.18E-03
77	GO:0051764: actin crosslink formation	3.18E-03
78	GO:0042274: ribosomal small subunit biogenesis	3.18E-03
79	GO:0048442: sepal development	3.18E-03
80	GO:0009765: photosynthesis, light harvesting	3.18E-03
81	GO:2000306: positive regulation of photomorphogenesis	3.18E-03
82	GO:0051567: histone H3-K9 methylation	3.18E-03
83	GO:0010508: positive regulation of autophagy	3.18E-03
84	GO:0008295: spermidine biosynthetic process	3.18E-03
85	GO:0010438: cellular response to sulfur starvation	4.08E-03
86	GO:0010158: abaxial cell fate specification	4.08E-03
87	GO:0032876: negative regulation of DNA endoreduplication	4.08E-03
88	GO:0016131: brassinosteroid metabolic process	4.08E-03
89	GO:0030041: actin filament polymerization	4.08E-03
90	GO:0016120: carotene biosynthetic process	4.08E-03
91	GO:0010584: pollen exine formation	4.27E-03
92	GO:0007166: cell surface receptor signaling pathway	4.84E-03
93	GO:0008033: tRNA processing	5.00E-03
94	GO:0009959: negative gravitropism	5.05E-03
95	GO:0010190: cytochrome b6f complex assembly	5.05E-03
96	GO:0016458: gene silencing	5.05E-03
97	GO:0010182: sugar mediated signaling pathway	5.39E-03
98	GO:0080086: stamen filament development	6.09E-03
99	GO:0009648: photoperiodism	6.09E-03
100	GO:0071333: cellular response to glucose stimulus	6.09E-03
101	GO:0010076: maintenance of floral meristem identity	6.09E-03
102	GO:0017148: negative regulation of translation	6.09E-03
103	GO:1901259: chloroplast rRNA processing	6.09E-03
104	GO:0031930: mitochondria-nucleus signaling pathway	6.09E-03
105	GO:0030488: tRNA methylation	6.09E-03
106	GO:0000302: response to reactive oxygen species	6.67E-03
107	GO:0000712: resolution of meiotic recombination intermediates	7.20E-03
108	GO:0010050: vegetative phase change	7.20E-03
109	GO:0010098: suspensor development	7.20E-03
110	GO:0051510: regulation of unidimensional cell growth	7.20E-03
111	GO:0015693: magnesium ion transport	7.20E-03
112	GO:0000105: histidine biosynthetic process	8.39E-03
113	GO:0010439: regulation of glucosinolate biosynthetic process	8.39E-03
114	GO:0009819: drought recovery	8.39E-03
115	GO:0009850: auxin metabolic process	8.39E-03
116	GO:0042255: ribosome assembly	8.39E-03
117	GO:0070413: trehalose metabolism in response to stress	8.39E-03
118	GO:0032875: regulation of DNA endoreduplication	8.39E-03
119	GO:0051607: defense response to virus	9.13E-03
120	GO:0007129: synapsis	9.63E-03
121	GO:0015996: chlorophyll catabolic process	9.63E-03
122	GO:0007186: G-protein coupled receptor signaling pathway	9.63E-03
123	GO:0010497: plasmodesmata-mediated intercellular transport	9.63E-03
124	GO:0032544: plastid translation	9.63E-03
125	GO:0010027: thylakoid membrane organization	9.68E-03
126	GO:0009051: pentose-phosphate shunt, oxidative branch	1.09E-02
127	GO:0006098: pentose-phosphate shunt	1.09E-02
128	GO:0048507: meristem development	1.09E-02
129	GO:0006298: mismatch repair	1.37E-02
130	GO:0006259: DNA metabolic process	1.37E-02
131	GO:0010629: negative regulation of gene expression	1.37E-02
132	GO:0009299: mRNA transcription	1.37E-02
133	GO:0048441: petal development	1.37E-02
134	GO:0006535: cysteine biosynthetic process from serine	1.37E-02
135	GO:0030422: production of siRNA involved in RNA interference	1.37E-02
136	GO:0009416: response to light stimulus	1.49E-02
137	GO:0009682: induced systemic resistance	1.52E-02
138	GO:0006265: DNA topological change	1.52E-02
139	GO:0006415: translational termination	1.52E-02
140	GO:0006352: DNA-templated transcription, initiation	1.52E-02
141	GO:0040008: regulation of growth	1.61E-02
142	GO:0009793: embryo development ending in seed dormancy	1.66E-02
143	GO:0045037: protein import into chloroplast stroma	1.68E-02
144	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.68E-02
145	GO:0009725: response to hormone	1.84E-02
146	GO:0006094: gluconeogenesis	1.84E-02
147	GO:0006839: mitochondrial transport	1.84E-02
148	GO:0006006: glucose metabolic process	1.84E-02
149	GO:0006631: fatty acid metabolic process	1.92E-02
150	GO:0048440: carpel development	2.00E-02
151	GO:0010020: chloroplast fission	2.00E-02
152	GO:0009926: auxin polar transport	2.08E-02
153	GO:0090351: seedling development	2.17E-02
154	GO:0010030: positive regulation of seed germination	2.17E-02
155	GO:0009644: response to high light intensity	2.25E-02
156	GO:0000162: tryptophan biosynthetic process	2.35E-02
157	GO:0019344: cysteine biosynthetic process	2.53E-02
158	GO:0080147: root hair cell development	2.53E-02
159	GO:0030150: protein import into mitochondrial matrix	2.53E-02
160	GO:0007010: cytoskeleton organization	2.53E-02
161	GO:0051017: actin filament bundle assembly	2.53E-02
162	GO:0006418: tRNA aminoacylation for protein translation	2.71E-02
163	GO:0010431: seed maturation	2.90E-02
164	GO:0006306: DNA methylation	2.90E-02
165	GO:0006730: one-carbon metabolic process	3.09E-02
166	GO:0009625: response to insect	3.29E-02
167	GO:0010082: regulation of root meristem growth	3.29E-02
168	GO:0048316: seed development	3.42E-02
169	GO:0010089: xylem development	3.49E-02
170	GO:0048443: stamen development	3.49E-02
171	GO:0006284: base-excision repair	3.49E-02
172	GO:0019722: calcium-mediated signaling	3.49E-02
173	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.70E-02
174	GO:0009740: gibberellic acid mediated signaling pathway	3.76E-02
175	GO:0010087: phloem or xylem histogenesis	3.91E-02
176	GO:0042631: cellular response to water deprivation	3.91E-02
177	GO:0034220: ion transmembrane transport	3.91E-02
178	GO:0006396: RNA processing	4.10E-02
179	GO:0048868: pollen tube development	4.12E-02
180	GO:0006342: chromatin silencing	4.12E-02
181	GO:0009741: response to brassinosteroid	4.12E-02
182	GO:0010268: brassinosteroid homeostasis	4.12E-02
183	GO:0009958: positive gravitropism	4.12E-02
184	GO:0010305: leaf vascular tissue pattern formation	4.12E-02
185	GO:0007059: chromosome segregation	4.34E-02
186	GO:0048544: recognition of pollen	4.34E-02
187	GO:0015979: photosynthesis	4.54E-02
188	GO:0071554: cell wall organization or biogenesis	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
4	GO:0050613: delta14-sterol reductase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0046905: phytoene synthase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0001872: (1->3)-beta-D-glucan binding	7.03E-05
9	GO:0004519: endonuclease activity	1.12E-04
10	GO:0003723: RNA binding	1.41E-04
11	GO:0005227: calcium activated cation channel activity	4.64E-04
12	GO:0016776: phosphotransferase activity, phosphate group as acceptor	4.64E-04
13	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	4.64E-04
14	GO:0080042: ADP-glucose pyrophosphohydrolase activity	4.64E-04
15	GO:0005290: L-histidine transmembrane transporter activity	4.64E-04
16	GO:0003984: acetolactate synthase activity	4.64E-04
17	GO:0008395: steroid hydroxylase activity	4.64E-04
18	GO:0051996: squalene synthase activity	4.64E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.64E-04
20	GO:0004830: tryptophan-tRNA ligase activity	4.64E-04
21	GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity	4.64E-04
22	GO:0017118: lipoyltransferase activity	1.00E-03
23	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.00E-03
24	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.00E-03
25	GO:0043425: bHLH transcription factor binding	1.00E-03
26	GO:0004766: spermidine synthase activity	1.00E-03
27	GO:0008805: carbon-monoxide oxygenase activity	1.00E-03
28	GO:0000064: L-ornithine transmembrane transporter activity	1.00E-03
29	GO:0004826: phenylalanine-tRNA ligase activity	1.00E-03
30	GO:0050736: O-malonyltransferase activity	1.00E-03
31	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.00E-03
32	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.00E-03
33	GO:0050017: L-3-cyanoalanine synthase activity	1.00E-03
34	GO:0004805: trehalose-phosphatase activity	1.15E-03
35	GO:0004180: carboxypeptidase activity	1.63E-03
36	GO:0004148: dihydrolipoyl dehydrogenase activity	1.63E-03
37	GO:0016805: dipeptidase activity	1.63E-03
38	GO:0008266: poly(U) RNA binding	1.95E-03
39	GO:0043023: ribosomal large subunit binding	2.37E-03
40	GO:0052654: L-leucine transaminase activity	2.37E-03
41	GO:0004300: enoyl-CoA hydratase activity	2.37E-03
42	GO:0052655: L-valine transaminase activity	2.37E-03
43	GO:0015189: L-lysine transmembrane transporter activity	2.37E-03
44	GO:0015181: arginine transmembrane transporter activity	2.37E-03
45	GO:0016149: translation release factor activity, codon specific	2.37E-03
46	GO:0017172: cysteine dioxygenase activity	2.37E-03
47	GO:0035197: siRNA binding	2.37E-03
48	GO:0052656: L-isoleucine transaminase activity	2.37E-03
49	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.37E-03
50	GO:0001053: plastid sigma factor activity	3.18E-03
51	GO:0005319: lipid transporter activity	3.18E-03
52	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.18E-03
53	GO:0016987: sigma factor activity	3.18E-03
54	GO:0004084: branched-chain-amino-acid transaminase activity	3.18E-03
55	GO:0004392: heme oxygenase (decyclizing) activity	3.18E-03
56	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.54E-03
57	GO:0008725: DNA-3-methyladenine glycosylase activity	4.08E-03
58	GO:0003785: actin monomer binding	4.08E-03
59	GO:0030983: mismatched DNA binding	5.05E-03
60	GO:0004332: fructose-bisphosphate aldolase activity	5.05E-03
61	GO:0004526: ribonuclease P activity	5.05E-03
62	GO:0004709: MAP kinase kinase kinase activity	5.05E-03
63	GO:0004130: cytochrome-c peroxidase activity	5.05E-03
64	GO:0016208: AMP binding	5.05E-03
65	GO:0016688: L-ascorbate peroxidase activity	5.05E-03
66	GO:0003690: double-stranded DNA binding	5.66E-03
67	GO:0050662: coenzyme binding	5.80E-03
68	GO:0004124: cysteine synthase activity	6.09E-03
69	GO:0004656: procollagen-proline 4-dioxygenase activity	6.09E-03
70	GO:0043022: ribosome binding	8.39E-03
71	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	9.63E-03
72	GO:0003747: translation release factor activity	1.09E-02
73	GO:0019843: rRNA binding	1.13E-02
74	GO:0030247: polysaccharide binding	1.14E-02
75	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.52E-02
76	GO:0003746: translation elongation factor activity	1.61E-02
77	GO:0004521: endoribonuclease activity	1.68E-02
78	GO:0000049: tRNA binding	1.68E-02
79	GO:0015095: magnesium ion transmembrane transporter activity	1.84E-02
80	GO:0009982: pseudouridine synthase activity	1.84E-02
81	GO:0015266: protein channel activity	1.84E-02
82	GO:0003924: GTPase activity	1.92E-02
83	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.00E-02
84	GO:0008146: sulfotransferase activity	2.17E-02
85	GO:0043621: protein self-association	2.25E-02
86	GO:0051536: iron-sulfur cluster binding	2.53E-02
87	GO:0031418: L-ascorbic acid binding	2.53E-02
88	GO:0003964: RNA-directed DNA polymerase activity	2.90E-02
89	GO:0016491: oxidoreductase activity	3.11E-02
90	GO:0003727: single-stranded RNA binding	3.49E-02
91	GO:0004812: aminoacyl-tRNA ligase activity	3.70E-02
92	GO:0010181: FMN binding	4.34E-02
93	GO:0019901: protein kinase binding	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0035452: extrinsic component of plastid membrane	0.00E+00
3	GO:0009537: proplastid	0.00E+00
4	GO:0009507: chloroplast	7.18E-22
5	GO:0009570: chloroplast stroma	6.04E-08
6	GO:0071821: FANCM-MHF complex	4.64E-04
7	GO:0043190: ATP-binding cassette (ABC) transporter complex	4.64E-04
8	GO:0043240: Fanconi anaemia nuclear complex	4.64E-04
9	GO:0009501: amyloplast	5.75E-04
10	GO:0031969: chloroplast membrane	7.00E-04
11	GO:0080085: signal recognition particle, chloroplast targeting	1.00E-03
12	GO:0009513: etioplast	1.00E-03
13	GO:0009295: nucleoid	1.21E-03
14	GO:0030529: intracellular ribonucleoprotein complex	1.40E-03
15	GO:0009528: plastid inner membrane	1.63E-03
16	GO:0009509: chromoplast	1.63E-03
17	GO:0009508: plastid chromosome	1.73E-03
18	GO:0009707: chloroplast outer membrane	1.97E-03
19	GO:0032432: actin filament bundle	2.37E-03
20	GO:0005719: nuclear euchromatin	2.37E-03
21	GO:0009654: photosystem II oxygen evolving complex	2.99E-03
22	GO:0042651: thylakoid membrane	2.99E-03
23	GO:0009527: plastid outer membrane	3.18E-03
24	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	3.18E-03
25	GO:0019898: extrinsic component of membrane	6.23E-03
26	GO:0009535: chloroplast thylakoid membrane	6.30E-03
27	GO:0009579: thylakoid	6.71E-03
28	GO:0042807: central vacuole	7.20E-03
29	GO:0009941: chloroplast envelope	8.26E-03
30	GO:0031305: integral component of mitochondrial inner membrane	8.39E-03
31	GO:0000326: protein storage vacuole	9.63E-03
32	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	9.63E-03
33	GO:0005680: anaphase-promoting complex	1.09E-02
34	GO:0015030: Cajal body	1.23E-02
35	GO:0016604: nuclear body	1.23E-02
36	GO:0005759: mitochondrial matrix	1.52E-02
37	GO:0005884: actin filament	1.52E-02
38	GO:0000311: plastid large ribosomal subunit	1.68E-02
39	GO:0005938: cell cortex	1.84E-02
40	GO:0030095: chloroplast photosystem II	2.00E-02
41	GO:0030176: integral component of endoplasmic reticulum membrane	2.17E-02
42	GO:0046658: anchored component of plasma membrane	2.43E-02
43	GO:0009532: plastid stroma	2.90E-02
44	GO:0015629: actin cytoskeleton	3.29E-02
45	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.49E-02
46	GO:0031965: nuclear membrane	4.56E-02
47	GO:0010287: plastoglobule	4.72E-02
48	GO:0009543: chloroplast thylakoid lumen	4.97E-02