co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0006780: uroporphyrinogen III biosynthetic process	0.00E+00
3	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
7	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
8	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
9	GO:0042820: vitamin B6 catabolic process	0.00E+00
10	GO:0009228: thiamine biosynthetic process	4.48E-05
11	GO:1901259: chloroplast rRNA processing	6.27E-05
12	GO:0010189: vitamin E biosynthetic process	6.27E-05
13	GO:0009791: post-embryonic development	9.24E-05
14	GO:0019252: starch biosynthetic process	9.24E-05
15	GO:0005991: trehalose metabolic process	1.52E-04
16	GO:0000476: maturation of 4.5S rRNA	1.52E-04
17	GO:0009443: pyridoxal 5'-phosphate salvage	1.52E-04
18	GO:0043953: protein transport by the Tat complex	1.52E-04
19	GO:0000967: rRNA 5'-end processing	1.52E-04
20	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	1.52E-04
21	GO:0006659: phosphatidylserine biosynthetic process	1.52E-04
22	GO:0065002: intracellular protein transmembrane transport	1.52E-04
23	GO:0005982: starch metabolic process	2.00E-04
24	GO:0015995: chlorophyll biosynthetic process	2.20E-04
25	GO:0016024: CDP-diacylglycerol biosynthetic process	3.17E-04
26	GO:0034470: ncRNA processing	3.47E-04
27	GO:0051645: Golgi localization	3.47E-04
28	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.47E-04
29	GO:0071457: cellular response to ozone	3.47E-04
30	GO:0018026: peptidyl-lysine monomethylation	3.47E-04
31	GO:0060151: peroxisome localization	3.47E-04
32	GO:1904143: positive regulation of carotenoid biosynthetic process	3.47E-04
33	GO:0005977: glycogen metabolic process	5.68E-04
34	GO:0009405: pathogenesis	5.68E-04
35	GO:0051646: mitochondrion localization	5.68E-04
36	GO:0006954: inflammatory response	5.68E-04
37	GO:0034051: negative regulation of plant-type hypersensitive response	5.68E-04
38	GO:0090436: leaf pavement cell development	5.68E-04
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.13E-04
40	GO:0071484: cellular response to light intensity	8.13E-04
41	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.13E-04
42	GO:0071486: cellular response to high light intensity	1.08E-03
43	GO:0006109: regulation of carbohydrate metabolic process	1.08E-03
44	GO:0010107: potassium ion import	1.08E-03
45	GO:0006546: glycine catabolic process	1.08E-03
46	GO:0006021: inositol biosynthetic process	1.08E-03
47	GO:0010021: amylopectin biosynthetic process	1.08E-03
48	GO:0008654: phospholipid biosynthetic process	1.25E-03
49	GO:0055114: oxidation-reduction process	1.31E-03
50	GO:0071493: cellular response to UV-B	1.36E-03
51	GO:0098719: sodium ion import across plasma membrane	1.36E-03
52	GO:0006564: L-serine biosynthetic process	1.36E-03
53	GO:0010236: plastoquinone biosynthetic process	1.36E-03
54	GO:0016042: lipid catabolic process	1.54E-03
55	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.67E-03
56	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.67E-03
57	GO:0006655: phosphatidylglycerol biosynthetic process	1.67E-03
58	GO:0050665: hydrogen peroxide biosynthetic process	1.67E-03
59	GO:0010027: thylakoid membrane organization	1.92E-03
60	GO:0009854: oxidative photosynthetic carbon pathway	2.01E-03
61	GO:0009955: adaxial/abaxial pattern specification	2.01E-03
62	GO:0048280: vesicle fusion with Golgi apparatus	2.01E-03
63	GO:0055075: potassium ion homeostasis	2.73E-03
64	GO:0070413: trehalose metabolism in response to stress	2.73E-03
65	GO:0019430: removal of superoxide radicals	3.12E-03
66	GO:0009657: plastid organization	3.12E-03
67	GO:0010204: defense response signaling pathway, resistance gene-independent	3.12E-03
68	GO:0032544: plastid translation	3.12E-03
69	GO:0090333: regulation of stomatal closure	3.53E-03
70	GO:0071577: zinc II ion transmembrane transport	3.96E-03
71	GO:0051453: regulation of intracellular pH	3.96E-03
72	GO:0006779: porphyrin-containing compound biosynthetic process	3.96E-03
73	GO:0010114: response to red light	4.05E-03
74	GO:0006949: syncytium formation	4.40E-03
75	GO:0006896: Golgi to vacuole transport	4.40E-03
76	GO:0006782: protoporphyrinogen IX biosynthetic process	4.40E-03
77	GO:0019684: photosynthesis, light reaction	4.86E-03
78	GO:0009089: lysine biosynthetic process via diaminopimelate	4.86E-03
79	GO:0043085: positive regulation of catalytic activity	4.86E-03
80	GO:0018119: peptidyl-cysteine S-nitrosylation	4.86E-03
81	GO:0009767: photosynthetic electron transport chain	5.83E-03
82	GO:0030048: actin filament-based movement	5.83E-03
83	GO:0048467: gynoecium development	6.33E-03
84	GO:0010143: cutin biosynthetic process	6.33E-03
85	GO:0010020: chloroplast fission	6.33E-03
86	GO:0019853: L-ascorbic acid biosynthetic process	6.86E-03
87	GO:0005992: trehalose biosynthetic process	7.95E-03
88	GO:0006418: tRNA aminoacylation for protein translation	8.51E-03
89	GO:0007017: microtubule-based process	8.51E-03
90	GO:0019915: lipid storage	9.10E-03
91	GO:0061077: chaperone-mediated protein folding	9.10E-03
92	GO:0016114: terpenoid biosynthetic process	9.10E-03
93	GO:0016226: iron-sulfur cluster assembly	9.69E-03
94	GO:0006012: galactose metabolic process	1.03E-02
95	GO:0009686: gibberellin biosynthetic process	1.03E-02
96	GO:0009790: embryo development	1.14E-02
97	GO:0016117: carotenoid biosynthetic process	1.16E-02
98	GO:0042147: retrograde transport, endosome to Golgi	1.16E-02
99	GO:0010182: sugar mediated signaling pathway	1.29E-02
100	GO:0009741: response to brassinosteroid	1.29E-02
101	GO:0010268: brassinosteroid homeostasis	1.29E-02
102	GO:0071472: cellular response to salt stress	1.29E-02
103	GO:0010154: fruit development	1.29E-02
104	GO:0006885: regulation of pH	1.29E-02
105	GO:0006662: glycerol ether metabolic process	1.29E-02
106	GO:0006814: sodium ion transport	1.36E-02
107	GO:0009646: response to absence of light	1.36E-02
108	GO:0006623: protein targeting to vacuole	1.42E-02
109	GO:0016132: brassinosteroid biosynthetic process	1.50E-02
110	GO:0006891: intra-Golgi vesicle-mediated transport	1.50E-02
111	GO:0032502: developmental process	1.57E-02
112	GO:1901657: glycosyl compound metabolic process	1.64E-02
113	GO:0010090: trichome morphogenesis	1.64E-02
114	GO:0009567: double fertilization forming a zygote and endosperm	1.71E-02
115	GO:0016125: sterol metabolic process	1.71E-02
116	GO:0009828: plant-type cell wall loosening	1.71E-02
117	GO:0009409: response to cold	1.77E-02
118	GO:0006810: transport	2.00E-02
119	GO:0009658: chloroplast organization	2.09E-02
120	GO:0009627: systemic acquired resistance	2.10E-02
121	GO:0006974: cellular response to DNA damage stimulus	2.10E-02
122	GO:0006888: ER to Golgi vesicle-mediated transport	2.18E-02
123	GO:0016049: cell growth	2.26E-02
124	GO:0009817: defense response to fungus, incompatible interaction	2.34E-02
125	GO:0048481: plant ovule development	2.34E-02
126	GO:0009813: flavonoid biosynthetic process	2.43E-02
127	GO:0009832: plant-type cell wall biogenesis	2.43E-02
128	GO:0010119: regulation of stomatal movement	2.60E-02
129	GO:0006865: amino acid transport	2.69E-02
130	GO:0034599: cellular response to oxidative stress	2.86E-02
131	GO:0015979: photosynthesis	2.95E-02
132	GO:0051707: response to other organism	3.32E-02
133	GO:0032259: methylation	3.65E-02
134	GO:0006855: drug transmembrane transport	3.71E-02
135	GO:0009664: plant-type cell wall organization	3.91E-02
136	GO:0006812: cation transport	3.91E-02
137	GO:0006397: mRNA processing	3.98E-02
138	GO:0006979: response to oxidative stress	4.07E-02
139	GO:0006486: protein glycosylation	4.11E-02
140	GO:0051603: proteolysis involved in cellular protein catabolic process	4.21E-02
141	GO:0006417: regulation of translation	4.42E-02
142	GO:0043086: negative regulation of catalytic activity	4.63E-02
143	GO:0048367: shoot system development	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0004852: uroporphyrinogen-III synthase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
4	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0010276: phytol kinase activity	0.00E+00
7	GO:0009011: starch synthase activity	1.84E-05
8	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.48E-05
9	GO:0004033: aldo-keto reductase (NADP) activity	1.08E-04
10	GO:0004328: formamidase activity	1.52E-04
11	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.52E-04
12	GO:0051777: ent-kaurenoate oxidase activity	1.52E-04
13	GO:0005080: protein kinase C binding	1.52E-04
14	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.52E-04
15	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.47E-04
16	GO:0004617: phosphoglycerate dehydrogenase activity	3.47E-04
17	GO:0004047: aminomethyltransferase activity	3.47E-04
18	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	3.47E-04
19	GO:0033201: alpha-1,4-glucan synthase activity	3.47E-04
20	GO:0004312: fatty acid synthase activity	3.47E-04
21	GO:0004512: inositol-3-phosphate synthase activity	3.47E-04
22	GO:0019156: isoamylase activity	3.47E-04
23	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.47E-04
24	GO:0005528: FK506 binding	5.64E-04
25	GO:0070402: NADPH binding	5.68E-04
26	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	5.68E-04
27	GO:0004373: glycogen (starch) synthase activity	5.68E-04
28	GO:0002161: aminoacyl-tRNA editing activity	5.68E-04
29	GO:0090729: toxin activity	5.68E-04
30	GO:0004751: ribose-5-phosphate isomerase activity	5.68E-04
31	GO:0016788: hydrolase activity, acting on ester bonds	6.68E-04
32	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	8.13E-04
33	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	8.13E-04
34	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	8.13E-04
35	GO:0016851: magnesium chelatase activity	8.13E-04
36	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	8.13E-04
37	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	8.13E-04
38	GO:0052689: carboxylic ester hydrolase activity	1.04E-03
39	GO:0016279: protein-lysine N-methyltransferase activity	1.08E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.08E-03
41	GO:0004045: aminoacyl-tRNA hydrolase activity	1.08E-03
42	GO:0045430: chalcone isomerase activity	1.08E-03
43	GO:0008891: glycolate oxidase activity	1.08E-03
44	GO:0005275: amine transmembrane transporter activity	1.36E-03
45	GO:0019843: rRNA binding	1.43E-03
46	GO:0016791: phosphatase activity	1.61E-03
47	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.67E-03
48	GO:2001070: starch binding	1.67E-03
49	GO:0004605: phosphatidate cytidylyltransferase activity	1.67E-03
50	GO:0004784: superoxide dismutase activity	1.67E-03
51	GO:0042578: phosphoric ester hydrolase activity	1.67E-03
52	GO:0004556: alpha-amylase activity	1.67E-03
53	GO:0015081: sodium ion transmembrane transporter activity	1.67E-03
54	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.01E-03
55	GO:0005525: GTP binding	2.04E-03
56	GO:0008135: translation factor activity, RNA binding	3.12E-03
57	GO:0003746: translation elongation factor activity	3.15E-03
58	GO:0008047: enzyme activator activity	4.40E-03
59	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.72E-03
60	GO:0008559: xenobiotic-transporting ATPase activity	4.86E-03
61	GO:0047372: acylglycerol lipase activity	4.86E-03
62	GO:0015386: potassium:proton antiporter activity	4.86E-03
63	GO:0008378: galactosyltransferase activity	5.34E-03
64	GO:0000049: tRNA binding	5.34E-03
65	GO:0003725: double-stranded RNA binding	5.83E-03
66	GO:0003774: motor activity	6.33E-03
67	GO:0008266: poly(U) RNA binding	6.33E-03
68	GO:0051536: iron-sulfur cluster binding	7.95E-03
69	GO:0005385: zinc ion transmembrane transporter activity	7.95E-03
70	GO:0004857: enzyme inhibitor activity	7.95E-03
71	GO:0003924: GTPase activity	8.06E-03
72	GO:0008324: cation transmembrane transporter activity	8.51E-03
73	GO:0030570: pectate lyase activity	1.03E-02
74	GO:0003727: single-stranded RNA binding	1.09E-02
75	GO:0047134: protein-disulfide reductase activity	1.16E-02
76	GO:0004812: aminoacyl-tRNA ligase activity	1.16E-02
77	GO:0004791: thioredoxin-disulfide reductase activity	1.36E-02
78	GO:0010181: FMN binding	1.36E-02
79	GO:0048038: quinone binding	1.50E-02
80	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.64E-02
81	GO:0015385: sodium:proton antiporter activity	1.64E-02
82	GO:0008483: transaminase activity	1.79E-02
83	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.79E-02
84	GO:0005200: structural constituent of cytoskeleton	1.79E-02
85	GO:0016597: amino acid binding	1.86E-02
86	GO:0008168: methyltransferase activity	2.01E-02
87	GO:0102483: scopolin beta-glucosidase activity	2.18E-02
88	GO:0020037: heme binding	2.22E-02
89	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.26E-02
90	GO:0015238: drug transmembrane transporter activity	2.43E-02
91	GO:0019825: oxygen binding	2.60E-02
92	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.60E-02
93	GO:0000149: SNARE binding	2.95E-02
94	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.95E-02
95	GO:0008422: beta-glucosidase activity	2.95E-02
96	GO:0004185: serine-type carboxypeptidase activity	3.32E-02
97	GO:0005484: SNAP receptor activity	3.32E-02
98	GO:0043621: protein self-association	3.52E-02
99	GO:0051287: NAD binding	3.81E-02
100	GO:0005506: iron ion binding	3.95E-02
101	GO:0015171: amino acid transmembrane transporter activity	4.42E-02
102	GO:0003824: catalytic activity	4.51E-02
103	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	7.68E-18
3	GO:0009570: chloroplast stroma	2.83E-17
4	GO:0009535: chloroplast thylakoid membrane	1.17E-05
5	GO:0009534: chloroplast thylakoid	4.12E-05
6	GO:0009941: chloroplast envelope	4.23E-05
7	GO:0031969: chloroplast membrane	1.42E-04
8	GO:0009547: plastid ribosome	1.52E-04
9	GO:0031361: integral component of thylakoid membrane	1.52E-04
10	GO:0009344: nitrite reductase complex [NAD(P)H]	1.52E-04
11	GO:0009543: chloroplast thylakoid lumen	1.94E-04
12	GO:0009579: thylakoid	2.52E-04
13	GO:0048046: apoplast	2.99E-04
14	GO:0043036: starch grain	3.47E-04
15	GO:0016020: membrane	3.92E-04
16	GO:0010007: magnesium chelatase complex	5.68E-04
17	GO:0033281: TAT protein transport complex	5.68E-04
18	GO:0015630: microtubule cytoskeleton	8.13E-04
19	GO:0030658: transport vesicle membrane	8.13E-04
20	GO:0010319: stromule	1.71E-03
21	GO:0009295: nucleoid	1.71E-03
22	GO:0012507: ER to Golgi transport vesicle membrane	2.73E-03
23	GO:0009501: amyloplast	2.73E-03
24	GO:0005763: mitochondrial small ribosomal subunit	3.53E-03
25	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.53E-03
26	GO:0031977: thylakoid lumen	3.74E-03
27	GO:0005618: cell wall	3.75E-03
28	GO:0016459: myosin complex	4.40E-03
29	GO:0000311: plastid large ribosomal subunit	5.34E-03
30	GO:0009508: plastid chromosome	5.83E-03
31	GO:0030095: chloroplast photosystem II	6.33E-03
32	GO:0005773: vacuole	7.04E-03
33	GO:0009706: chloroplast inner membrane	7.76E-03
34	GO:0009654: photosystem II oxygen evolving complex	8.51E-03
35	GO:0009522: photosystem I	1.36E-02
36	GO:0019898: extrinsic component of membrane	1.42E-02
37	GO:0009536: plastid	1.53E-02
38	GO:0016021: integral component of membrane	1.58E-02
39	GO:0030529: intracellular ribonucleoprotein complex	1.94E-02
40	GO:0005789: endoplasmic reticulum membrane	2.12E-02
41	GO:0009707: chloroplast outer membrane	2.34E-02
42	GO:0000325: plant-type vacuole	2.60E-02
43	GO:0031201: SNARE complex	3.14E-02
44	GO:0031902: late endosome membrane	3.14E-02
45	GO:0005840: ribosome	4.27E-02