co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042820: vitamin B6 catabolic process	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0042821: pyridoxal biosynthetic process	0.00E+00
6	GO:0017038: protein import	0.00E+00
7	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
8	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
9	GO:0009658: chloroplast organization	3.06E-07
10	GO:0010236: plastoquinone biosynthetic process	6.36E-05
11	GO:0009228: thiamine biosynthetic process	9.33E-05
12	GO:0010189: vitamin E biosynthetic process	1.29E-04
13	GO:0009791: post-embryonic development	2.29E-04
14	GO:0006659: phosphatidylserine biosynthetic process	2.39E-04
15	GO:0042371: vitamin K biosynthetic process	2.39E-04
16	GO:0005991: trehalose metabolic process	2.39E-04
17	GO:0000305: response to oxygen radical	2.39E-04
18	GO:0080112: seed growth	2.39E-04
19	GO:0000476: maturation of 4.5S rRNA	2.39E-04
20	GO:0009443: pyridoxal 5'-phosphate salvage	2.39E-04
21	GO:0000967: rRNA 5'-end processing	2.39E-04
22	GO:1905039: carboxylic acid transmembrane transport	2.39E-04
23	GO:1905200: gibberellic acid transmembrane transport	2.39E-04
24	GO:0009773: photosynthetic electron transport in photosystem I	5.19E-04
25	GO:0018026: peptidyl-lysine monomethylation	5.29E-04
26	GO:0060151: peroxisome localization	5.29E-04
27	GO:1904143: positive regulation of carotenoid biosynthetic process	5.29E-04
28	GO:0006568: tryptophan metabolic process	5.29E-04
29	GO:0010024: phytochromobilin biosynthetic process	5.29E-04
30	GO:0034470: ncRNA processing	5.29E-04
31	GO:0051645: Golgi localization	5.29E-04
32	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.29E-04
33	GO:0030048: actin filament-based movement	6.71E-04
34	GO:0048467: gynoecium development	7.56E-04
35	GO:0090436: leaf pavement cell development	8.60E-04
36	GO:0006696: ergosterol biosynthetic process	8.60E-04
37	GO:0090153: regulation of sphingolipid biosynthetic process	8.60E-04
38	GO:0006788: heme oxidation	8.60E-04
39	GO:0051646: mitochondrion localization	8.60E-04
40	GO:0006954: inflammatory response	8.60E-04
41	GO:0006168: adenine salvage	1.23E-03
42	GO:0043572: plastid fission	1.23E-03
43	GO:0090308: regulation of methylation-dependent chromatin silencing	1.23E-03
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.23E-03
45	GO:0045338: farnesyl diphosphate metabolic process	1.23E-03
46	GO:0006166: purine ribonucleoside salvage	1.23E-03
47	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.23E-03
48	GO:0016556: mRNA modification	1.23E-03
49	GO:0061077: chaperone-mediated protein folding	1.25E-03
50	GO:0006855: drug transmembrane transport	1.29E-03
51	GO:0006021: inositol biosynthetic process	1.64E-03
52	GO:0010109: regulation of photosynthesis	1.64E-03
53	GO:0006109: regulation of carbohydrate metabolic process	1.64E-03
54	GO:0010107: potassium ion import	1.64E-03
55	GO:0006749: glutathione metabolic process	1.64E-03
56	GO:0080022: primary root development	1.89E-03
57	GO:0010182: sugar mediated signaling pathway	2.03E-03
58	GO:0046907: intracellular transport	2.09E-03
59	GO:0098719: sodium ion import across plasma membrane	2.09E-03
60	GO:0006564: L-serine biosynthetic process	2.09E-03
61	GO:0044209: AMP salvage	2.09E-03
62	GO:0009646: response to absence of light	2.18E-03
63	GO:0008654: phospholipid biosynthetic process	2.34E-03
64	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.57E-03
65	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.57E-03
66	GO:0000741: karyogamy	2.57E-03
67	GO:0009416: response to light stimulus	2.65E-03
68	GO:0032502: developmental process	2.67E-03
69	GO:0010583: response to cyclopentenone	2.67E-03
70	GO:0010090: trichome morphogenesis	2.85E-03
71	GO:0009828: plant-type cell wall loosening	3.03E-03
72	GO:0048280: vesicle fusion with Golgi apparatus	3.09E-03
73	GO:0042026: protein refolding	3.09E-03
74	GO:0042372: phylloquinone biosynthetic process	3.09E-03
75	GO:2000033: regulation of seed dormancy process	3.09E-03
76	GO:1901259: chloroplast rRNA processing	3.09E-03
77	GO:0006458: 'de novo' protein folding	3.09E-03
78	GO:0009772: photosynthetic electron transport in photosystem II	3.64E-03
79	GO:0009690: cytokinin metabolic process	4.23E-03
80	GO:0006605: protein targeting	4.23E-03
81	GO:0010078: maintenance of root meristem identity	4.23E-03
82	GO:0055075: potassium ion homeostasis	4.23E-03
83	GO:0052543: callose deposition in cell wall	4.23E-03
84	GO:0046620: regulation of organ growth	4.23E-03
85	GO:0070413: trehalose metabolism in response to stress	4.23E-03
86	GO:0043562: cellular response to nitrogen levels	4.84E-03
87	GO:0009657: plastid organization	4.84E-03
88	GO:0009821: alkaloid biosynthetic process	5.48E-03
89	GO:0090333: regulation of stomatal closure	5.48E-03
90	GO:0055114: oxidation-reduction process	6.07E-03
91	GO:0051453: regulation of intracellular pH	6.15E-03
92	GO:0009638: phototropism	6.15E-03
93	GO:0010162: seed dormancy process	6.85E-03
94	GO:0006896: Golgi to vacuole transport	6.85E-03
95	GO:0018119: peptidyl-cysteine S-nitrosylation	7.58E-03
96	GO:0010216: maintenance of DNA methylation	7.58E-03
97	GO:0009684: indoleacetic acid biosynthetic process	7.58E-03
98	GO:0010015: root morphogenesis	7.58E-03
99	GO:0000038: very long-chain fatty acid metabolic process	7.58E-03
100	GO:0019684: photosynthesis, light reaction	7.58E-03
101	GO:0015770: sucrose transport	7.58E-03
102	GO:0009089: lysine biosynthetic process via diaminopimelate	7.58E-03
103	GO:0043085: positive regulation of catalytic activity	7.58E-03
104	GO:0016024: CDP-diacylglycerol biosynthetic process	8.33E-03
105	GO:0010628: positive regulation of gene expression	9.11E-03
106	GO:0010588: cotyledon vascular tissue pattern formation	9.11E-03
107	GO:0009664: plant-type cell wall organization	9.65E-03
108	GO:0010143: cutin biosynthetic process	9.92E-03
109	GO:0010020: chloroplast fission	9.92E-03
110	GO:0010030: positive regulation of seed germination	1.07E-02
111	GO:0009901: anther dehiscence	1.07E-02
112	GO:0019853: L-ascorbic acid biosynthetic process	1.07E-02
113	GO:0006071: glycerol metabolic process	1.16E-02
114	GO:0005992: trehalose biosynthetic process	1.25E-02
115	GO:0048367: shoot system development	1.27E-02
116	GO:0019953: sexual reproduction	1.34E-02
117	GO:0006418: tRNA aminoacylation for protein translation	1.34E-02
118	GO:0016114: terpenoid biosynthetic process	1.43E-02
119	GO:0019915: lipid storage	1.43E-02
120	GO:0031348: negative regulation of defense response	1.53E-02
121	GO:0030245: cellulose catabolic process	1.53E-02
122	GO:0006730: one-carbon metabolic process	1.53E-02
123	GO:0006012: galactose metabolic process	1.62E-02
124	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.62E-02
125	GO:0009686: gibberellin biosynthetic process	1.62E-02
126	GO:0016042: lipid catabolic process	1.76E-02
127	GO:0016117: carotenoid biosynthetic process	1.82E-02
128	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.82E-02
129	GO:0042147: retrograde transport, endosome to Golgi	1.82E-02
130	GO:0051028: mRNA transport	1.82E-02
131	GO:0010087: phloem or xylem histogenesis	1.93E-02
132	GO:0042631: cellular response to water deprivation	1.93E-02
133	GO:0042335: cuticle development	1.93E-02
134	GO:0006662: glycerol ether metabolic process	2.03E-02
135	GO:0010197: polar nucleus fusion	2.03E-02
136	GO:0048868: pollen tube development	2.03E-02
137	GO:0009741: response to brassinosteroid	2.03E-02
138	GO:0010268: brassinosteroid homeostasis	2.03E-02
139	GO:0009958: positive gravitropism	2.03E-02
140	GO:0010154: fruit development	2.03E-02
141	GO:0006885: regulation of pH	2.03E-02
142	GO:0006814: sodium ion transport	2.14E-02
143	GO:0009790: embryo development	2.17E-02
144	GO:0009851: auxin biosynthetic process	2.25E-02
145	GO:0006623: protein targeting to vacuole	2.25E-02
146	GO:0048825: cotyledon development	2.25E-02
147	GO:0006891: intra-Golgi vesicle-mediated transport	2.36E-02
148	GO:0016132: brassinosteroid biosynthetic process	2.36E-02
149	GO:0006413: translational initiation	2.39E-02
150	GO:0016125: sterol metabolic process	2.71E-02
151	GO:0010252: auxin homeostasis	2.71E-02
152	GO:0010027: thylakoid membrane organization	3.07E-02
153	GO:0016126: sterol biosynthetic process	3.07E-02
154	GO:0009607: response to biotic stimulus	3.19E-02
155	GO:0006974: cellular response to DNA damage stimulus	3.32E-02
156	GO:0015995: chlorophyll biosynthetic process	3.45E-02
157	GO:0006888: ER to Golgi vesicle-mediated transport	3.45E-02
158	GO:0016049: cell growth	3.58E-02
159	GO:0048481: plant ovule development	3.71E-02
160	GO:0009793: embryo development ending in seed dormancy	3.77E-02
161	GO:0009826: unidimensional cell growth	3.81E-02
162	GO:0009832: plant-type cell wall biogenesis	3.84E-02
163	GO:0009407: toxin catabolic process	3.97E-02
164	GO:0048527: lateral root development	4.11E-02
165	GO:0016051: carbohydrate biosynthetic process	4.39E-02
166	GO:0034599: cellular response to oxidative stress	4.53E-02
167	GO:0048366: leaf development	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0010276: phytol kinase activity	0.00E+00
2	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0005528: FK506 binding	6.71E-05
9	GO:0004033: aldo-keto reductase (NADP) activity	2.16E-04
10	GO:0008158: hedgehog receptor activity	2.39E-04
11	GO:0005080: protein kinase C binding	2.39E-04
12	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.39E-04
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.39E-04
14	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.39E-04
15	GO:1905201: gibberellin transmembrane transporter activity	2.39E-04
16	GO:0051777: ent-kaurenoate oxidase activity	2.39E-04
17	GO:0004856: xylulokinase activity	2.39E-04
18	GO:0015020: glucuronosyltransferase activity	4.48E-04
19	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.29E-04
20	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.29E-04
21	GO:0004362: glutathione-disulfide reductase activity	5.29E-04
22	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	5.29E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	5.29E-04
24	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	5.29E-04
25	GO:0004512: inositol-3-phosphate synthase activity	5.29E-04
26	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	5.29E-04
27	GO:0015238: drug transmembrane transporter activity	6.15E-04
28	GO:0003774: motor activity	7.56E-04
29	GO:0004751: ribose-5-phosphate isomerase activity	8.60E-04
30	GO:0070402: NADPH binding	8.60E-04
31	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.60E-04
32	GO:0002161: aminoacyl-tRNA editing activity	8.60E-04
33	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.23E-03
34	GO:0003999: adenine phosphoribosyltransferase activity	1.23E-03
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.29E-03
36	GO:0004392: heme oxygenase (decyclizing) activity	1.64E-03
37	GO:0004659: prenyltransferase activity	1.64E-03
38	GO:0016279: protein-lysine N-methyltransferase activity	1.64E-03
39	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.64E-03
40	GO:0016788: hydrolase activity, acting on ester bonds	1.75E-03
41	GO:0016846: carbon-sulfur lyase activity	2.09E-03
42	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.09E-03
43	GO:0015081: sodium ion transmembrane transporter activity	2.57E-03
44	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.57E-03
45	GO:0008200: ion channel inhibitor activity	2.57E-03
46	GO:0004605: phosphatidate cytidylyltransferase activity	2.57E-03
47	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.57E-03
48	GO:0016791: phosphatase activity	3.03E-03
49	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.09E-03
50	GO:0008195: phosphatidate phosphatase activity	3.09E-03
51	GO:0015297: antiporter activity	4.57E-03
52	GO:0008135: translation factor activity, RNA binding	4.84E-03
53	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.48E-03
54	GO:0003746: translation elongation factor activity	5.96E-03
55	GO:0016844: strictosidine synthase activity	6.15E-03
56	GO:0003993: acid phosphatase activity	6.23E-03
57	GO:0004712: protein serine/threonine/tyrosine kinase activity	6.50E-03
58	GO:0008047: enzyme activator activity	6.85E-03
59	GO:0008559: xenobiotic-transporting ATPase activity	7.58E-03
60	GO:0044183: protein binding involved in protein folding	7.58E-03
61	GO:0015386: potassium:proton antiporter activity	7.58E-03
62	GO:0008515: sucrose transmembrane transporter activity	7.58E-03
63	GO:0008378: galactosyltransferase activity	8.33E-03
64	GO:0000049: tRNA binding	8.33E-03
65	GO:0004089: carbonate dehydratase activity	9.11E-03
66	GO:0003725: double-stranded RNA binding	9.11E-03
67	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.92E-03
68	GO:0051119: sugar transmembrane transporter activity	1.07E-02
69	GO:0005215: transporter activity	1.08E-02
70	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.16E-02
71	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.16E-02
72	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.16E-02
73	GO:0004857: enzyme inhibitor activity	1.25E-02
74	GO:0052689: carboxylic ester hydrolase activity	1.26E-02
75	GO:0004176: ATP-dependent peptidase activity	1.43E-02
76	GO:0008810: cellulase activity	1.62E-02
77	GO:0003924: GTPase activity	1.82E-02
78	GO:0047134: protein-disulfide reductase activity	1.82E-02
79	GO:0004812: aminoacyl-tRNA ligase activity	1.82E-02
80	GO:0004791: thioredoxin-disulfide reductase activity	2.14E-02
81	GO:0005525: GTP binding	2.16E-02
82	GO:0048038: quinone binding	2.36E-02
83	GO:0015385: sodium:proton antiporter activity	2.59E-02
84	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.59E-02
85	GO:0008237: metallopeptidase activity	2.83E-02
86	GO:0016597: amino acid binding	2.95E-02
87	GO:0003743: translation initiation factor activity	2.99E-02
88	GO:0008375: acetylglucosaminyltransferase activity	3.32E-02
89	GO:0003824: catalytic activity	3.36E-02
90	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.58E-02
91	GO:0004222: metalloendopeptidase activity	3.97E-02
92	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.11E-02
93	GO:0050660: flavin adenine dinucleotide binding	4.57E-02
94	GO:0000149: SNARE binding	4.67E-02
95	GO:0050661: NADP binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.29E-11
2	GO:0009570: chloroplast stroma	1.12E-08
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.23E-04
4	GO:0016459: myosin complex	4.48E-04
5	GO:0009543: chloroplast thylakoid lumen	5.42E-04
6	GO:0009941: chloroplast envelope	1.21E-03
7	GO:0030658: transport vesicle membrane	1.23E-03
8	GO:0009535: chloroplast thylakoid membrane	1.48E-03
9	GO:0016020: membrane	1.56E-03
10	GO:0016021: integral component of membrane	2.32E-03
11	GO:0031969: chloroplast membrane	2.37E-03
12	GO:0009706: chloroplast inner membrane	2.42E-03
13	GO:0010319: stromule	3.21E-03
14	GO:0009295: nucleoid	3.21E-03
15	GO:0012507: ER to Golgi transport vesicle membrane	4.23E-03
16	GO:0005720: nuclear heterochromatin	5.48E-03
17	GO:0005789: endoplasmic reticulum membrane	6.17E-03
18	GO:0031902: late endosome membrane	7.08E-03
19	GO:0031977: thylakoid lumen	7.08E-03
20	GO:0009508: plastid chromosome	9.11E-03
21	GO:0048046: apoplast	1.26E-02
22	GO:0009536: plastid	1.29E-02
23	GO:0009579: thylakoid	1.34E-02
24	GO:0005770: late endosome	2.03E-02
25	GO:0005773: vacuole	2.76E-02
26	GO:0005643: nuclear pore	3.71E-02
27	GO:0005618: cell wall	3.78E-02
28	GO:0000325: plant-type vacuole	4.11E-02
29	GO:0009534: chloroplast thylakoid	4.70E-02
30	GO:0005886: plasma membrane	4.72E-02
31	GO:0031201: SNARE complex	4.95E-02