co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
2	GO:0009173: pyrimidine ribonucleoside monophosphate metabolic process	0.00E+00
3	GO:0072722: response to amitrole	0.00E+00
4	GO:0006903: vesicle targeting	0.00E+00
5	GO:0006216: cytidine catabolic process	0.00E+00
6	GO:0006858: extracellular transport	0.00E+00
7	GO:0046680: response to DDT	0.00E+00
8	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
9	GO:0006511: ubiquitin-dependent protein catabolic process	1.01E-06
10	GO:0006102: isocitrate metabolic process	1.72E-06
11	GO:0006099: tricarboxylic acid cycle	3.11E-05
12	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.99E-05
13	GO:0015031: protein transport	8.02E-05
14	GO:1900384: regulation of flavonol biosynthetic process	1.62E-04
15	GO:0006144: purine nucleobase metabolic process	1.62E-04
16	GO:0019628: urate catabolic process	1.62E-04
17	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.62E-04
18	GO:0000032: cell wall mannoprotein biosynthetic process	1.62E-04
19	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.62E-04
20	GO:0042964: thioredoxin reduction	1.62E-04
21	GO:0009821: alkaloid biosynthetic process	1.84E-04
22	GO:0009615: response to virus	1.99E-04
23	GO:0015709: thiosulfate transport	3.69E-04
24	GO:0071422: succinate transmembrane transport	3.69E-04
25	GO:0046939: nucleotide phosphorylation	3.69E-04
26	GO:0006568: tryptophan metabolic process	3.69E-04
27	GO:0009805: coumarin biosynthetic process	3.69E-04
28	GO:0010372: positive regulation of gibberellin biosynthetic process	3.69E-04
29	GO:0080026: response to indolebutyric acid	3.69E-04
30	GO:0007031: peroxisome organization	5.00E-04
31	GO:0046686: response to cadmium ion	6.01E-04
32	GO:0090630: activation of GTPase activity	6.04E-04
33	GO:0006517: protein deglycosylation	6.04E-04
34	GO:0010272: response to silver ion	6.04E-04
35	GO:0033591: response to L-ascorbic acid	6.04E-04
36	GO:0009062: fatty acid catabolic process	6.04E-04
37	GO:0010359: regulation of anion channel activity	6.04E-04
38	GO:0030433: ubiquitin-dependent ERAD pathway	8.11E-04
39	GO:0051603: proteolysis involved in cellular protein catabolic process	8.22E-04
40	GO:0080024: indolebutyric acid metabolic process	8.63E-04
41	GO:0009298: GDP-mannose biosynthetic process	8.63E-04
42	GO:0015729: oxaloacetate transport	8.63E-04
43	GO:0006612: protein targeting to membrane	8.63E-04
44	GO:0006893: Golgi to plasma membrane transport	8.63E-04
45	GO:0010222: stem vascular tissue pattern formation	1.14E-03
46	GO:0006221: pyrimidine nucleotide biosynthetic process	1.14E-03
47	GO:0006564: L-serine biosynthetic process	1.45E-03
48	GO:0005513: detection of calcium ion	1.45E-03
49	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.45E-03
50	GO:0071423: malate transmembrane transport	1.45E-03
51	GO:0009823: cytokinin catabolic process	1.45E-03
52	GO:0030163: protein catabolic process	1.66E-03
53	GO:0009058: biosynthetic process	1.72E-03
54	GO:0009972: cytidine deamination	1.78E-03
55	GO:0006555: methionine metabolic process	1.78E-03
56	GO:0035435: phosphate ion transmembrane transport	1.78E-03
57	GO:0009751: response to salicylic acid	1.82E-03
58	GO:0009554: megasporogenesis	2.14E-03
59	GO:0019509: L-methionine salvage from methylthioadenosine	2.14E-03
60	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.14E-03
61	GO:0009612: response to mechanical stimulus	2.14E-03
62	GO:0006888: ER to Golgi vesicle-mediated transport	2.47E-03
63	GO:0008272: sulfate transport	2.52E-03
64	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.52E-03
65	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.91E-03
66	GO:0006402: mRNA catabolic process	2.91E-03
67	GO:0006491: N-glycan processing	2.91E-03
68	GO:0006499: N-terminal protein myristoylation	3.01E-03
69	GO:0009699: phenylpropanoid biosynthetic process	3.33E-03
70	GO:0060321: acceptance of pollen	3.33E-03
71	GO:0019430: removal of superoxide radicals	3.33E-03
72	GO:0010120: camalexin biosynthetic process	3.33E-03
73	GO:0046685: response to arsenic-containing substance	3.77E-03
74	GO:0055114: oxidation-reduction process	4.13E-03
75	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.22E-03
76	GO:0006032: chitin catabolic process	4.69E-03
77	GO:0009688: abscisic acid biosynthetic process	4.69E-03
78	GO:0043069: negative regulation of programmed cell death	4.69E-03
79	GO:0000272: polysaccharide catabolic process	5.19E-03
80	GO:0009682: induced systemic resistance	5.19E-03
81	GO:0072593: reactive oxygen species metabolic process	5.19E-03
82	GO:0043085: positive regulation of catalytic activity	5.19E-03
83	GO:0009846: pollen germination	5.58E-03
84	GO:0016925: protein sumoylation	5.69E-03
85	GO:0006790: sulfur compound metabolic process	5.69E-03
86	GO:0006807: nitrogen compound metabolic process	6.22E-03
87	GO:0034605: cellular response to heat	6.76E-03
88	GO:0006096: glycolytic process	7.08E-03
89	GO:0006886: intracellular protein transport	7.24E-03
90	GO:0046854: phosphatidylinositol phosphorylation	7.32E-03
91	GO:0019853: L-ascorbic acid biosynthetic process	7.32E-03
92	GO:0009620: response to fungus	7.78E-03
93	GO:0000162: tryptophan biosynthetic process	7.90E-03
94	GO:0016998: cell wall macromolecule catabolic process	9.72E-03
95	GO:0015992: proton transport	9.72E-03
96	GO:0019748: secondary metabolic process	1.04E-02
97	GO:0010227: floral organ abscission	1.10E-02
98	GO:0009306: protein secretion	1.17E-02
99	GO:0010089: xylem development	1.17E-02
100	GO:0009561: megagametogenesis	1.17E-02
101	GO:0042744: hydrogen peroxide catabolic process	1.22E-02
102	GO:0042147: retrograde transport, endosome to Golgi	1.24E-02
103	GO:0051028: mRNA transport	1.24E-02
104	GO:0042742: defense response to bacterium	1.29E-02
105	GO:0010118: stomatal movement	1.31E-02
106	GO:0006662: glycerol ether metabolic process	1.38E-02
107	GO:0048544: recognition of pollen	1.45E-02
108	GO:0009646: response to absence of light	1.45E-02
109	GO:0010150: leaf senescence	1.48E-02
110	GO:0009851: auxin biosynthetic process	1.52E-02
111	GO:0006635: fatty acid beta-oxidation	1.60E-02
112	GO:0031047: gene silencing by RNA	1.67E-02
113	GO:0006914: autophagy	1.83E-02
114	GO:0010252: auxin homeostasis	1.83E-02
115	GO:0006464: cellular protein modification process	1.83E-02
116	GO:0006904: vesicle docking involved in exocytosis	1.91E-02
117	GO:0016579: protein deubiquitination	1.99E-02
118	GO:0009627: systemic acquired resistance	2.24E-02
119	GO:0016049: cell growth	2.42E-02
120	GO:0009860: pollen tube growth	2.47E-02
121	GO:0048767: root hair elongation	2.60E-02
122	GO:0009723: response to ethylene	2.65E-02
123	GO:0009407: toxin catabolic process	2.69E-02
124	GO:0010043: response to zinc ion	2.78E-02
125	GO:0007568: aging	2.78E-02
126	GO:0010119: regulation of stomatal movement	2.78E-02
127	GO:0009651: response to salt stress	2.80E-02
128	GO:0045087: innate immune response	2.97E-02
129	GO:0016192: vesicle-mediated transport	2.99E-02
130	GO:0034599: cellular response to oxidative stress	3.06E-02
131	GO:0006839: mitochondrial transport	3.26E-02
132	GO:0006887: exocytosis	3.35E-02
133	GO:0006897: endocytosis	3.35E-02
134	GO:0045454: cell redox homeostasis	3.40E-02
135	GO:0009744: response to sucrose	3.55E-02
136	GO:0051707: response to other organism	3.55E-02
137	GO:0008643: carbohydrate transport	3.76E-02
138	GO:0009636: response to toxic substance	3.86E-02
139	GO:0006855: drug transmembrane transport	3.97E-02
140	GO:0031347: regulation of defense response	4.07E-02
141	GO:0009664: plant-type cell wall organization	4.18E-02
142	GO:0009809: lignin biosynthetic process	4.39E-02
143	GO:0006486: protein glycosylation	4.39E-02
144	GO:0009753: response to jasmonic acid	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0016504: peptidase activator activity	0.00E+00
2	GO:0070577: lysine-acetylated histone binding	0.00E+00
3	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
4	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
5	GO:0047844: deoxycytidine deaminase activity	0.00E+00
6	GO:0004846: urate oxidase activity	0.00E+00
7	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.94E-08
8	GO:0004298: threonine-type endopeptidase activity	9.05E-07
9	GO:0036402: proteasome-activating ATPase activity	4.99E-05
10	GO:0004518: nuclease activity	1.29E-04
11	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.62E-04
12	GO:0019786: Atg8-specific protease activity	1.62E-04
13	GO:0048037: cofactor binding	1.62E-04
14	GO:0004476: mannose-6-phosphate isomerase activity	1.62E-04
15	GO:0030955: potassium ion binding	2.20E-04
16	GO:0016844: strictosidine synthase activity	2.20E-04
17	GO:0004743: pyruvate kinase activity	2.20E-04
18	GO:1901677: phosphate transmembrane transporter activity	3.69E-04
19	GO:0008517: folic acid transporter activity	3.69E-04
20	GO:0004640: phosphoribosylanthranilate isomerase activity	3.69E-04
21	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.69E-04
22	GO:0052739: phosphatidylserine 1-acylhydrolase activity	3.69E-04
23	GO:0010297: heteropolysaccharide binding	3.69E-04
24	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	3.69E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	3.69E-04
26	GO:0004127: cytidylate kinase activity	3.69E-04
27	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.69E-04
28	GO:0019779: Atg8 activating enzyme activity	3.69E-04
29	GO:0015117: thiosulfate transmembrane transporter activity	3.69E-04
30	GO:0017025: TBP-class protein binding	5.00E-04
31	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.04E-04
32	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.04E-04
33	GO:0015141: succinate transmembrane transporter activity	6.04E-04
34	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.04E-04
35	GO:0051287: NAD binding	6.88E-04
36	GO:0000287: magnesium ion binding	7.28E-04
37	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.63E-04
38	GO:0017077: oxidative phosphorylation uncoupler activity	8.63E-04
39	GO:0019201: nucleotide kinase activity	8.63E-04
40	GO:0009041: uridylate kinase activity	8.63E-04
41	GO:0015131: oxaloacetate transmembrane transporter activity	8.63E-04
42	GO:0008233: peptidase activity	1.01E-03
43	GO:0019776: Atg8 ligase activity	1.14E-03
44	GO:0010279: indole-3-acetic acid amido synthetase activity	1.14E-03
45	GO:0070628: proteasome binding	1.14E-03
46	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.14E-03
47	GO:0004031: aldehyde oxidase activity	1.14E-03
48	GO:0050302: indole-3-acetaldehyde oxidase activity	1.14E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	1.28E-03
50	GO:0031386: protein tag	1.45E-03
51	GO:0008374: O-acyltransferase activity	1.45E-03
52	GO:0019139: cytokinin dehydrogenase activity	1.45E-03
53	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.78E-03
54	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.78E-03
55	GO:0004656: procollagen-proline 4-dioxygenase activity	2.14E-03
56	GO:0004126: cytidine deaminase activity	2.14E-03
57	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.14E-03
58	GO:0004017: adenylate kinase activity	2.14E-03
59	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.47E-03
60	GO:0008320: protein transmembrane transporter activity	2.52E-03
61	GO:0015140: malate transmembrane transporter activity	2.52E-03
62	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.16E-03
63	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.33E-03
64	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.46E-03
65	GO:0004568: chitinase activity	4.69E-03
66	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.69E-03
67	GO:0008047: enzyme activator activity	4.69E-03
68	GO:0008559: xenobiotic-transporting ATPase activity	5.19E-03
69	GO:0015116: sulfate transmembrane transporter activity	5.69E-03
70	GO:0008131: primary amine oxidase activity	6.76E-03
71	GO:0008061: chitin binding	7.32E-03
72	GO:0031418: L-ascorbic acid binding	8.48E-03
73	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	9.72E-03
74	GO:0008514: organic anion transmembrane transporter activity	1.17E-02
75	GO:0047134: protein-disulfide reductase activity	1.24E-02
76	GO:0005199: structural constituent of cell wall	1.38E-02
77	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.60E-02
78	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.75E-02
79	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.88E-02
80	GO:0000166: nucleotide binding	1.88E-02
81	GO:0008237: metallopeptidase activity	1.91E-02
82	GO:0016597: amino acid binding	1.99E-02
83	GO:0051213: dioxygenase activity	2.07E-02
84	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.24E-02
85	GO:0008375: acetylglucosaminyltransferase activity	2.24E-02
86	GO:0004601: peroxidase activity	2.29E-02
87	GO:0004683: calmodulin-dependent protein kinase activity	2.33E-02
88	GO:0043531: ADP binding	2.51E-02
89	GO:0005096: GTPase activator activity	2.60E-02
90	GO:0050660: flavin adenine dinucleotide binding	2.65E-02
91	GO:0030246: carbohydrate binding	2.73E-02
92	GO:0003746: translation elongation factor activity	2.97E-02
93	GO:0003993: acid phosphatase activity	3.06E-02
94	GO:0046872: metal ion binding	3.08E-02
95	GO:0004364: glutathione transferase activity	3.45E-02
96	GO:0004722: protein serine/threonine phosphatase activity	3.73E-02
97	GO:0051537: 2 iron, 2 sulfur cluster binding	3.76E-02
98	GO:0005198: structural molecule activity	3.86E-02
99	GO:0003924: GTPase activity	4.18E-02
100	GO:0005506: iron ion binding	4.43E-02
101	GO:0005524: ATP binding	4.62E-02
102	GO:0031625: ubiquitin protein ligase binding	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.39E-10
2	GO:0005839: proteasome core complex	1.29E-08
3	GO:0005829: cytosol	1.07E-07
4	GO:0031597: cytosolic proteasome complex	6.99E-05
5	GO:0031595: nuclear proteasome complex	9.33E-05
6	GO:0016442: RISC complex	1.62E-04
7	GO:0008540: proteasome regulatory particle, base subcomplex	2.20E-04
8	GO:0005773: vacuole	3.49E-04
9	GO:0009530: primary cell wall	6.04E-04
10	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.04E-04
11	GO:0030132: clathrin coat of coated pit	6.04E-04
12	GO:0005794: Golgi apparatus	7.23E-04
13	GO:0005775: vacuolar lumen	8.63E-04
14	GO:0005776: autophagosome	1.14E-03
15	GO:0030904: retromer complex	1.78E-03
16	GO:0005783: endoplasmic reticulum	2.14E-03
17	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.52E-03
18	GO:0005886: plasma membrane	2.87E-03
19	GO:0000421: autophagosome membrane	2.91E-03
20	GO:0031982: vesicle	2.91E-03
21	GO:0019773: proteasome core complex, alpha-subunit complex	3.33E-03
22	GO:0031090: organelle membrane	3.77E-03
23	GO:0010494: cytoplasmic stress granule	3.77E-03
24	GO:0005618: cell wall	4.60E-03
25	GO:0008541: proteasome regulatory particle, lid subcomplex	5.19E-03
26	GO:0048471: perinuclear region of cytoplasm	5.19E-03
27	GO:0005737: cytoplasm	6.10E-03
28	GO:0005635: nuclear envelope	6.41E-03
29	GO:0005802: trans-Golgi network	9.07E-03
30	GO:0031410: cytoplasmic vesicle	1.04E-02
31	GO:0005768: endosome	1.10E-02
32	GO:0000145: exocyst	1.67E-02
33	GO:0032580: Golgi cisterna membrane	1.83E-02
34	GO:0005778: peroxisomal membrane	1.91E-02
35	GO:0000932: P-body	2.07E-02
36	GO:0005777: peroxisome	2.24E-02
37	GO:0005789: endoplasmic reticulum membrane	2.43E-02
38	GO:0005643: nuclear pore	2.51E-02
39	GO:0009506: plasmodesma	2.52E-02
40	GO:0000325: plant-type vacuole	2.78E-02
41	GO:0005774: vacuolar membrane	2.95E-02
42	GO:0048046: apoplast	3.20E-02
43	GO:0031902: late endosome membrane	3.35E-02
44	GO:0005856: cytoskeleton	3.86E-02