co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0008298: intracellular mRNA localization	0.00E+00
3	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:0006399: tRNA metabolic process	0.00E+00
8	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
9	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
10	GO:0042407: cristae formation	0.00E+00
11	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
12	GO:0007638: mechanosensory behavior	0.00E+00
13	GO:0006573: valine metabolic process	0.00E+00
14	GO:0070125: mitochondrial translational elongation	0.00E+00
15	GO:0045184: establishment of protein localization	0.00E+00
16	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
17	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
18	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
19	GO:0070979: protein K11-linked ubiquitination	0.00E+00
20	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
21	GO:0017038: protein import	0.00E+00
22	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
23	GO:0043488: regulation of mRNA stability	0.00E+00
24	GO:0061157: mRNA destabilization	0.00E+00
25	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
26	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
27	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
28	GO:0030155: regulation of cell adhesion	0.00E+00
29	GO:0019323: pentose catabolic process	0.00E+00
30	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
31	GO:1905177: tracheary element differentiation	0.00E+00
32	GO:0009658: chloroplast organization	1.68E-07
33	GO:0015995: chlorophyll biosynthetic process	6.29E-06
34	GO:0045038: protein import into chloroplast thylakoid membrane	3.27E-05
35	GO:1900871: chloroplast mRNA modification	5.37E-05
36	GO:0018026: peptidyl-lysine monomethylation	5.37E-05
37	GO:1901259: chloroplast rRNA processing	9.35E-05
38	GO:0010020: chloroplast fission	1.19E-04
39	GO:0009793: embryo development ending in seed dormancy	1.64E-04
40	GO:0046620: regulation of organ growth	1.95E-04
41	GO:0009416: response to light stimulus	2.59E-04
42	GO:0009657: plastid organization	2.63E-04
43	GO:2001141: regulation of RNA biosynthetic process	3.22E-04
44	GO:0046739: transport of virus in multicellular host	3.22E-04
45	GO:1900865: chloroplast RNA modification	4.30E-04
46	GO:0009765: photosynthesis, light harvesting	5.25E-04
47	GO:0080110: sporopollenin biosynthetic process	7.72E-04
48	GO:0016123: xanthophyll biosynthetic process	7.72E-04
49	GO:0010588: cotyledon vascular tissue pattern formation	9.11E-04
50	GO:2000012: regulation of auxin polar transport	9.11E-04
51	GO:0009451: RNA modification	9.62E-04
52	GO:0016554: cytidine to uridine editing	1.06E-03
53	GO:0042793: transcription from plastid promoter	1.06E-03
54	GO:0009959: negative gravitropism	1.06E-03
55	GO:0010207: photosystem II assembly	1.07E-03
56	GO:0006659: phosphatidylserine biosynthetic process	1.16E-03
57	GO:0042759: long-chain fatty acid biosynthetic process	1.16E-03
58	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.16E-03
59	GO:0006551: leucine metabolic process	1.16E-03
60	GO:0042371: vitamin K biosynthetic process	1.16E-03
61	GO:0043686: co-translational protein modification	1.16E-03
62	GO:2000021: regulation of ion homeostasis	1.16E-03
63	GO:0035987: endodermal cell differentiation	1.16E-03
64	GO:0005980: glycogen catabolic process	1.16E-03
65	GO:0030198: extracellular matrix organization	1.16E-03
66	GO:0006438: valyl-tRNA aminoacylation	1.16E-03
67	GO:0090558: plant epidermis development	1.16E-03
68	GO:0043007: maintenance of rDNA	1.16E-03
69	GO:0051247: positive regulation of protein metabolic process	1.16E-03
70	GO:1902458: positive regulation of stomatal opening	1.16E-03
71	GO:0000476: maturation of 4.5S rRNA	1.16E-03
72	GO:0015904: tetracycline transport	1.16E-03
73	GO:0000967: rRNA 5'-end processing	1.16E-03
74	GO:2000905: negative regulation of starch metabolic process	1.16E-03
75	GO:0005991: trehalose metabolic process	1.16E-03
76	GO:0009090: homoserine biosynthetic process	1.16E-03
77	GO:0048363: mucilage pectin metabolic process	1.16E-03
78	GO:0070509: calcium ion import	1.16E-03
79	GO:0006419: alanyl-tRNA aminoacylation	1.16E-03
80	GO:0044262: cellular carbohydrate metabolic process	1.16E-03
81	GO:0043266: regulation of potassium ion transport	1.16E-03
82	GO:0010442: guard cell morphogenesis	1.16E-03
83	GO:0010063: positive regulation of trichoblast fate specification	1.16E-03
84	GO:0042659: regulation of cell fate specification	1.16E-03
85	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.16E-03
86	GO:0010480: microsporocyte differentiation	1.16E-03
87	GO:0010080: regulation of floral meristem growth	1.16E-03
88	GO:0000025: maltose catabolic process	1.16E-03
89	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.37E-03
90	GO:0009099: valine biosynthetic process	1.40E-03
91	GO:0030488: tRNA methylation	1.40E-03
92	GO:0009082: branched-chain amino acid biosynthetic process	1.40E-03
93	GO:0010027: thylakoid membrane organization	1.67E-03
94	GO:0048437: floral organ development	1.80E-03
95	GO:0071668: plant-type cell wall assembly	2.57E-03
96	GO:1904143: positive regulation of carotenoid biosynthetic process	2.57E-03
97	GO:0060359: response to ammonium ion	2.57E-03
98	GO:0048255: mRNA stabilization	2.57E-03
99	GO:0080009: mRNA methylation	2.57E-03
100	GO:0009786: regulation of asymmetric cell division	2.57E-03
101	GO:0031648: protein destabilization	2.57E-03
102	GO:0001682: tRNA 5'-leader removal	2.57E-03
103	GO:0006423: cysteinyl-tRNA aminoacylation	2.57E-03
104	GO:1903426: regulation of reactive oxygen species biosynthetic process	2.57E-03
105	GO:0006568: tryptophan metabolic process	2.57E-03
106	GO:2000123: positive regulation of stomatal complex development	2.57E-03
107	GO:0010024: phytochromobilin biosynthetic process	2.57E-03
108	GO:0034470: ncRNA processing	2.57E-03
109	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.57E-03
110	GO:0006432: phenylalanyl-tRNA aminoacylation	2.57E-03
111	GO:0052541: plant-type cell wall cellulose metabolic process	2.57E-03
112	GO:0010497: plasmodesmata-mediated intercellular transport	2.76E-03
113	GO:0071482: cellular response to light stimulus	2.76E-03
114	GO:0009097: isoleucine biosynthetic process	2.76E-03
115	GO:0009734: auxin-activated signaling pathway	2.77E-03
116	GO:0040008: regulation of growth	2.88E-03
117	GO:0009733: response to auxin	3.62E-03
118	GO:0010087: phloem or xylem histogenesis	3.63E-03
119	GO:0009098: leucine biosynthetic process	3.95E-03
120	GO:0031425: chloroplast RNA processing	3.95E-03
121	GO:0006779: porphyrin-containing compound biosynthetic process	3.95E-03
122	GO:0010182: sugar mediated signaling pathway	4.00E-03
123	GO:0009958: positive gravitropism	4.00E-03
124	GO:0010305: leaf vascular tissue pattern formation	4.00E-03
125	GO:0006662: glycerol ether metabolic process	4.00E-03
126	GO:0006696: ergosterol biosynthetic process	4.27E-03
127	GO:0090153: regulation of sphingolipid biosynthetic process	4.27E-03
128	GO:0043157: response to cation stress	4.27E-03
129	GO:0072661: protein targeting to plasma membrane	4.27E-03
130	GO:0006788: heme oxidation	4.27E-03
131	GO:0010022: meristem determinacy	4.27E-03
132	GO:0005977: glycogen metabolic process	4.27E-03
133	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	4.27E-03
134	GO:0048586: regulation of long-day photoperiodism, flowering	4.27E-03
135	GO:0045910: negative regulation of DNA recombination	4.27E-03
136	GO:0006954: inflammatory response	4.27E-03
137	GO:0031145: anaphase-promoting complex-dependent catabolic process	4.27E-03
138	GO:0033591: response to L-ascorbic acid	4.27E-03
139	GO:0010623: programmed cell death involved in cell development	4.27E-03
140	GO:0048281: inflorescence morphogenesis	4.27E-03
141	GO:0090708: specification of plant organ axis polarity	4.27E-03
142	GO:0009742: brassinosteroid mediated signaling pathway	4.46E-03
143	GO:0048829: root cap development	4.63E-03
144	GO:0006782: protoporphyrinogen IX biosynthetic process	4.63E-03
145	GO:0015979: photosynthesis	5.19E-03
146	GO:0009773: photosynthetic electron transport in photosystem I	5.37E-03
147	GO:0006415: translational termination	5.37E-03
148	GO:0019684: photosynthesis, light reaction	5.37E-03
149	GO:0009089: lysine biosynthetic process via diaminopimelate	5.37E-03
150	GO:0006352: DNA-templated transcription, initiation	5.37E-03
151	GO:0005983: starch catabolic process	6.18E-03
152	GO:0043572: plastid fission	6.25E-03
153	GO:0019048: modulation by virus of host morphology or physiology	6.25E-03
154	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	6.25E-03
155	GO:0090308: regulation of methylation-dependent chromatin silencing	6.25E-03
156	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	6.25E-03
157	GO:0009067: aspartate family amino acid biosynthetic process	6.25E-03
158	GO:0031048: chromatin silencing by small RNA	6.25E-03
159	GO:0010148: transpiration	6.25E-03
160	GO:1990019: protein storage vacuole organization	6.25E-03
161	GO:0009052: pentose-phosphate shunt, non-oxidative branch	6.25E-03
162	GO:0010071: root meristem specification	6.25E-03
163	GO:0051513: regulation of monopolar cell growth	6.25E-03
164	GO:0009647: skotomorphogenesis	6.25E-03
165	GO:0010306: rhamnogalacturonan II biosynthetic process	6.25E-03
166	GO:0016556: mRNA modification	6.25E-03
167	GO:0007231: osmosensory signaling pathway	6.25E-03
168	GO:0009102: biotin biosynthetic process	6.25E-03
169	GO:0030071: regulation of mitotic metaphase/anaphase transition	6.25E-03
170	GO:0010239: chloroplast mRNA processing	6.25E-03
171	GO:0022622: root system development	8.49E-03
172	GO:0010021: amylopectin biosynthetic process	8.49E-03
173	GO:0006221: pyrimidine nucleotide biosynthetic process	8.49E-03
174	GO:0051567: histone H3-K9 methylation	8.49E-03
175	GO:0010508: positive regulation of autophagy	8.49E-03
176	GO:0008295: spermidine biosynthetic process	8.49E-03
177	GO:0010109: regulation of photosynthesis	8.49E-03
178	GO:0030104: water homeostasis	8.49E-03
179	GO:0033500: carbohydrate homeostasis	8.49E-03
180	GO:2000038: regulation of stomatal complex development	8.49E-03
181	GO:0042274: ribosomal small subunit biogenesis	8.49E-03
182	GO:0006021: inositol biosynthetic process	8.49E-03
183	GO:2000306: positive regulation of photomorphogenesis	8.49E-03
184	GO:0070588: calcium ion transmembrane transport	8.96E-03
185	GO:0005975: carbohydrate metabolic process	9.02E-03
186	GO:0006071: glycerol metabolic process	1.00E-02
187	GO:0010375: stomatal complex patterning	1.10E-02
188	GO:0048497: maintenance of floral organ identity	1.10E-02
189	GO:0031365: N-terminal protein amino acid modification	1.10E-02
190	GO:0009107: lipoate biosynthetic process	1.10E-02
191	GO:0016120: carotene biosynthetic process	1.10E-02
192	GO:0000304: response to singlet oxygen	1.10E-02
193	GO:0032543: mitochondrial translation	1.10E-02
194	GO:0032876: negative regulation of DNA endoreduplication	1.10E-02
195	GO:0010236: plastoquinone biosynthetic process	1.10E-02
196	GO:0048367: shoot system development	1.17E-02
197	GO:0006418: tRNA aminoacylation for protein translation	1.23E-02
198	GO:0051302: regulation of cell division	1.23E-02
199	GO:0010405: arabinogalactan protein metabolic process	1.37E-02
200	GO:0032973: amino acid export	1.37E-02
201	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.37E-02
202	GO:0009913: epidermal cell differentiation	1.37E-02
203	GO:0000741: karyogamy	1.37E-02
204	GO:0006655: phosphatidylglycerol biosynthetic process	1.37E-02
205	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	1.37E-02
206	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.37E-02
207	GO:1902456: regulation of stomatal opening	1.37E-02
208	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.37E-02
209	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.37E-02
210	GO:0033365: protein localization to organelle	1.37E-02
211	GO:0016458: gene silencing	1.37E-02
212	GO:0006730: one-carbon metabolic process	1.49E-02
213	GO:0009686: gibberellin biosynthetic process	1.63E-02
214	GO:0045454: cell redox homeostasis	1.63E-02
215	GO:0009088: threonine biosynthetic process	1.66E-02
216	GO:0042026: protein refolding	1.66E-02
217	GO:0080086: stamen filament development	1.66E-02
218	GO:2000033: regulation of seed dormancy process	1.66E-02
219	GO:0042372: phylloquinone biosynthetic process	1.66E-02
220	GO:0009648: photoperiodism	1.66E-02
221	GO:2000067: regulation of root morphogenesis	1.66E-02
222	GO:0006458: 'de novo' protein folding	1.66E-02
223	GO:0017148: negative regulation of translation	1.66E-02
224	GO:0048280: vesicle fusion with Golgi apparatus	1.66E-02
225	GO:0034599: cellular response to oxidative stress	1.72E-02
226	GO:0010584: pollen exine formation	1.78E-02
227	GO:0016117: carotenoid biosynthetic process	1.93E-02
228	GO:0030307: positive regulation of cell growth	1.97E-02
229	GO:0015693: magnesium ion transport	1.97E-02
230	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.97E-02
231	GO:0010103: stomatal complex morphogenesis	1.97E-02
232	GO:0032880: regulation of protein localization	1.97E-02
233	GO:0010161: red light signaling pathway	1.97E-02
234	GO:0070370: cellular heat acclimation	1.97E-02
235	GO:0010098: suspensor development	1.97E-02
236	GO:0048528: post-embryonic root development	1.97E-02
237	GO:0009772: photosynthetic electron transport in photosystem II	1.97E-02
238	GO:0043090: amino acid import	1.97E-02
239	GO:0010444: guard mother cell differentiation	1.97E-02
240	GO:0006400: tRNA modification	1.97E-02
241	GO:0030497: fatty acid elongation	1.97E-02
242	GO:0008033: tRNA processing	2.09E-02
243	GO:0010118: stomatal movement	2.09E-02
244	GO:0080022: primary root development	2.09E-02
245	GO:0010197: polar nucleus fusion	2.25E-02
246	GO:0048868: pollen tube development	2.25E-02
247	GO:0009926: auxin polar transport	2.25E-02
248	GO:2000070: regulation of response to water deprivation	2.30E-02
249	GO:0055075: potassium ion homeostasis	2.30E-02
250	GO:0000105: histidine biosynthetic process	2.30E-02
251	GO:0009231: riboflavin biosynthetic process	2.30E-02
252	GO:0016042: lipid catabolic process	2.30E-02
253	GO:0070413: trehalose metabolism in response to stress	2.30E-02
254	GO:0001522: pseudouridine synthesis	2.30E-02
255	GO:0007155: cell adhesion	2.30E-02
256	GO:0048564: photosystem I assembly	2.30E-02
257	GO:0006605: protein targeting	2.30E-02
258	GO:0010078: maintenance of root meristem identity	2.30E-02
259	GO:0032875: regulation of DNA endoreduplication	2.30E-02
260	GO:0009646: response to absence of light	2.42E-02
261	GO:0048825: cotyledon development	2.60E-02
262	GO:0009790: embryo development	2.61E-02
263	GO:0006397: mRNA processing	2.63E-02
264	GO:0032544: plastid translation	2.65E-02
265	GO:0007186: G-protein coupled receptor signaling pathway	2.65E-02
266	GO:0043562: cellular response to nitrogen levels	2.65E-02
267	GO:0001558: regulation of cell growth	2.65E-02
268	GO:0010099: regulation of photomorphogenesis	2.65E-02
269	GO:0015996: chlorophyll catabolic process	2.65E-02
270	GO:0010100: negative regulation of photomorphogenesis	2.65E-02
271	GO:0048366: leaf development	2.96E-02
272	GO:0032502: developmental process	2.98E-02
273	GO:0010583: response to cyclopentenone	2.98E-02
274	GO:0000373: Group II intron splicing	3.02E-02
275	GO:0000902: cell morphogenesis	3.02E-02
276	GO:0048507: meristem development	3.02E-02
277	GO:0051865: protein autoubiquitination	3.02E-02
278	GO:0080144: amino acid homeostasis	3.02E-02
279	GO:0046916: cellular transition metal ion homeostasis	3.02E-02
280	GO:0046685: response to arsenic-containing substance	3.02E-02
281	GO:0006783: heme biosynthetic process	3.02E-02
282	GO:1901657: glycosyl compound metabolic process	3.17E-02
283	GO:0009086: methionine biosynthetic process	3.40E-02
284	GO:0048354: mucilage biosynthetic process involved in seed coat development	3.40E-02
285	GO:2000280: regulation of root development	3.40E-02
286	GO:0009638: phototropism	3.40E-02
287	GO:0043067: regulation of programmed cell death	3.40E-02
288	GO:0055114: oxidation-reduction process	3.44E-02
289	GO:0010162: seed dormancy process	3.80E-02
290	GO:0030422: production of siRNA involved in RNA interference	3.80E-02
291	GO:0006896: Golgi to vacuole transport	3.80E-02
292	GO:0045036: protein targeting to chloroplast	3.80E-02
293	GO:0009641: shade avoidance	3.80E-02
294	GO:0006298: mismatch repair	3.80E-02
295	GO:0006949: syncytium formation	3.80E-02
296	GO:0009299: mRNA transcription	3.80E-02
297	GO:0051607: defense response to virus	3.81E-02
298	GO:0007166: cell surface receptor signaling pathway	4.06E-02
299	GO:0006816: calcium ion transport	4.21E-02
300	GO:0048229: gametophyte development	4.21E-02
301	GO:0010216: maintenance of DNA methylation	4.21E-02
302	GO:0009684: indoleacetic acid biosynthetic process	4.21E-02
303	GO:0009073: aromatic amino acid family biosynthetic process	4.21E-02
304	GO:0043085: positive regulation of catalytic activity	4.21E-02
305	GO:0010029: regulation of seed germination	4.26E-02
306	GO:0016024: CDP-diacylglycerol biosynthetic process	4.64E-02
307	GO:0045037: protein import into chloroplast stroma	4.64E-02
308	GO:0010582: floral meristem determinacy	4.64E-02
309	GO:0009740: gibberellic acid mediated signaling pathway	4.70E-02
310	GO:0016311: dephosphorylation	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0015267: channel activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
8	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
9	GO:0071633: dihydroceramidase activity	0.00E+00
10	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
11	GO:0046905: phytoene synthase activity	0.00E+00
12	GO:0005048: signal sequence binding	0.00E+00
13	GO:0005201: extracellular matrix structural constituent	0.00E+00
14	GO:0004076: biotin synthase activity	0.00E+00
15	GO:0004823: leucine-tRNA ligase activity	0.00E+00
16	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
17	GO:0047661: amino-acid racemase activity	0.00E+00
18	GO:0003723: RNA binding	1.71E-05
19	GO:0004148: dihydrolipoyl dehydrogenase activity	1.63E-04
20	GO:0005528: FK506 binding	2.17E-04
21	GO:0001872: (1->3)-beta-D-glucan binding	3.22E-04
22	GO:0004519: endonuclease activity	4.87E-04
23	GO:0016987: sigma factor activity	5.25E-04
24	GO:0016279: protein-lysine N-methyltransferase activity	5.25E-04
25	GO:0019199: transmembrane receptor protein kinase activity	5.25E-04
26	GO:0043495: protein anchor	5.25E-04
27	GO:0001053: plastid sigma factor activity	5.25E-04
28	GO:0004832: valine-tRNA ligase activity	1.16E-03
29	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.16E-03
30	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.16E-03
31	GO:0050308: sugar-phosphatase activity	1.16E-03
32	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.16E-03
33	GO:0004813: alanine-tRNA ligase activity	1.16E-03
34	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	1.16E-03
35	GO:0042586: peptide deformylase activity	1.16E-03
36	GO:0052381: tRNA dimethylallyltransferase activity	1.16E-03
37	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.16E-03
38	GO:0051996: squalene synthase activity	1.16E-03
39	GO:0010313: phytochrome binding	1.16E-03
40	GO:0051777: ent-kaurenoate oxidase activity	1.16E-03
41	GO:0004856: xylulokinase activity	1.16E-03
42	GO:0004134: 4-alpha-glucanotransferase activity	1.16E-03
43	GO:0050139: nicotinate-N-glucosyltransferase activity	1.16E-03
44	GO:0004645: phosphorylase activity	1.16E-03
45	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.16E-03
46	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.16E-03
47	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.16E-03
48	GO:0019203: carbohydrate phosphatase activity	1.16E-03
49	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.16E-03
50	GO:0003984: acetolactate synthase activity	1.16E-03
51	GO:0008158: hedgehog receptor activity	1.16E-03
52	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.16E-03
53	GO:0005080: protein kinase C binding	1.16E-03
54	GO:0008184: glycogen phosphorylase activity	1.16E-03
55	GO:0016597: amino acid binding	1.53E-03
56	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.65E-03
57	GO:0019899: enzyme binding	1.80E-03
58	GO:0004176: ATP-dependent peptidase activity	2.10E-03
59	GO:0017118: lipoyltransferase activity	2.57E-03
60	GO:0008805: carbon-monoxide oxygenase activity	2.57E-03
61	GO:0008493: tetracycline transporter activity	2.57E-03
62	GO:0004826: phenylalanine-tRNA ligase activity	2.57E-03
63	GO:0004412: homoserine dehydrogenase activity	2.57E-03
64	GO:0003852: 2-isopropylmalate synthase activity	2.57E-03
65	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	2.57E-03
66	GO:0080041: ADP-ribose pyrophosphohydrolase activity	2.57E-03
67	GO:0004512: inositol-3-phosphate synthase activity	2.57E-03
68	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.57E-03
69	GO:0043425: bHLH transcription factor binding	2.57E-03
70	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	2.57E-03
71	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	2.57E-03
72	GO:0016630: protochlorophyllide reductase activity	2.57E-03
73	GO:0004766: spermidine synthase activity	2.57E-03
74	GO:0019156: isoamylase activity	2.57E-03
75	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.57E-03
76	GO:0004817: cysteine-tRNA ligase activity	2.57E-03
77	GO:0004750: ribulose-phosphate 3-epimerase activity	2.57E-03
78	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.57E-03
79	GO:0047134: protein-disulfide reductase activity	3.28E-03
80	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.33E-03
81	GO:0003747: translation release factor activity	3.33E-03
82	GO:0016805: dipeptidase activity	4.27E-03
83	GO:0016992: lipoate synthase activity	4.27E-03
84	GO:0003913: DNA photolyase activity	4.27E-03
85	GO:0002161: aminoacyl-tRNA editing activity	4.27E-03
86	GO:0070402: NADPH binding	4.27E-03
87	GO:0005504: fatty acid binding	4.27E-03
88	GO:0015462: ATPase-coupled protein transmembrane transporter activity	4.27E-03
89	GO:0004180: carboxypeptidase activity	4.27E-03
90	GO:0004791: thioredoxin-disulfide reductase activity	4.40E-03
91	GO:0042802: identical protein binding	5.09E-03
92	GO:0000049: tRNA binding	6.18E-03
93	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.23E-03
94	GO:0043023: ribosomal large subunit binding	6.25E-03
95	GO:0052654: L-leucine transaminase activity	6.25E-03
96	GO:0009041: uridylate kinase activity	6.25E-03
97	GO:0035197: siRNA binding	6.25E-03
98	GO:0016851: magnesium chelatase activity	6.25E-03
99	GO:0052655: L-valine transaminase activity	6.25E-03
100	GO:0016149: translation release factor activity, codon specific	6.25E-03
101	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	6.25E-03
102	GO:0004072: aspartate kinase activity	6.25E-03
103	GO:0052656: L-isoleucine transaminase activity	6.25E-03
104	GO:0031072: heat shock protein binding	7.04E-03
105	GO:0005262: calcium channel activity	7.04E-03
106	GO:0009982: pseudouridine synthase activity	7.04E-03
107	GO:0008237: metallopeptidase activity	7.31E-03
108	GO:0008266: poly(U) RNA binding	7.97E-03
109	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.97E-03
110	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	8.49E-03
111	GO:0004084: branched-chain-amino-acid transaminase activity	8.49E-03
112	GO:0004659: prenyltransferase activity	8.49E-03
113	GO:0045430: chalcone isomerase activity	8.49E-03
114	GO:0004045: aminoacyl-tRNA hydrolase activity	8.49E-03
115	GO:0042277: peptide binding	8.49E-03
116	GO:0004392: heme oxygenase (decyclizing) activity	8.49E-03
117	GO:0003924: GTPase activity	9.06E-03
118	GO:0016846: carbon-sulfur lyase activity	1.10E-02
119	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.10E-02
120	GO:0016491: oxidoreductase activity	1.28E-02
121	GO:0004222: metalloendopeptidase activity	1.36E-02
122	GO:0008200: ion channel inhibitor activity	1.37E-02
123	GO:2001070: starch binding	1.37E-02
124	GO:0030983: mismatched DNA binding	1.37E-02
125	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.37E-02
126	GO:0004556: alpha-amylase activity	1.37E-02
127	GO:0004462: lactoylglutathione lyase activity	1.37E-02
128	GO:0004526: ribonuclease P activity	1.37E-02
129	GO:0052689: carboxylic ester hydrolase activity	1.39E-02
130	GO:0015035: protein disulfide oxidoreductase activity	1.54E-02
131	GO:0022891: substrate-specific transmembrane transporter activity	1.63E-02
132	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.66E-02
133	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.66E-02
134	GO:0016832: aldehyde-lyase activity	1.66E-02
135	GO:0051753: mannan synthase activity	1.66E-02
136	GO:0008195: phosphatidate phosphatase activity	1.66E-02
137	GO:0003730: mRNA 3'-UTR binding	1.66E-02
138	GO:0004656: procollagen-proline 4-dioxygenase activity	1.66E-02
139	GO:0003824: catalytic activity	1.68E-02
140	GO:0003993: acid phosphatase activity	1.72E-02
141	GO:0005525: GTP binding	1.74E-02
142	GO:0003727: single-stranded RNA binding	1.78E-02
143	GO:0004812: aminoacyl-tRNA ligase activity	1.93E-02
144	GO:0004033: aldo-keto reductase (NADP) activity	2.30E-02
145	GO:0008312: 7S RNA binding	2.30E-02
146	GO:0050662: coenzyme binding	2.42E-02
147	GO:0043621: protein self-association	2.48E-02
148	GO:0035091: phosphatidylinositol binding	2.48E-02
149	GO:0046914: transition metal ion binding	2.65E-02
150	GO:0008173: RNA methyltransferase activity	2.65E-02
151	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.02E-02
152	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.02E-02
153	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.27E-02
154	GO:0005200: structural constituent of cytoskeleton	3.59E-02
155	GO:0003777: microtubule motor activity	3.71E-02
156	GO:0015171: amino acid transmembrane transporter activity	3.71E-02
157	GO:0008047: enzyme activator activity	3.80E-02
158	GO:0015020: glucuronosyltransferase activity	3.80E-02
159	GO:0008559: xenobiotic-transporting ATPase activity	4.21E-02
160	GO:0044183: protein binding involved in protein folding	4.21E-02
161	GO:0016168: chlorophyll binding	4.26E-02
162	GO:0004650: polygalacturonase activity	4.52E-02
163	GO:0008378: galactosyltransferase activity	4.64E-02
164	GO:0004521: endoribonuclease activity	4.64E-02
165	GO:0016787: hydrolase activity	4.68E-02
166	GO:0004871: signal transducer activity	4.69E-02
167	GO:0102483: scopolin beta-glucosidase activity	4.74E-02
168	GO:0030247: polysaccharide binding	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0005948: acetolactate synthase complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	8.20E-42
4	GO:0009570: chloroplast stroma	2.61E-23
5	GO:0009941: chloroplast envelope	6.51E-12
6	GO:0009508: plastid chromosome	1.68E-07
7	GO:0009534: chloroplast thylakoid	5.32E-07
8	GO:0009295: nucleoid	2.36E-06
9	GO:0009535: chloroplast thylakoid membrane	4.96E-06
10	GO:0009543: chloroplast thylakoid lumen	1.59E-05
11	GO:0031969: chloroplast membrane	2.29E-05
12	GO:0080085: signal recognition particle, chloroplast targeting	5.37E-05
13	GO:0030529: intracellular ribonucleoprotein complex	3.11E-04
14	GO:0009344: nitrite reductase complex [NAD(P)H]	1.16E-03
15	GO:0046658: anchored component of plasma membrane	1.70E-03
16	GO:0042651: thylakoid membrane	1.85E-03
17	GO:0009654: photosystem II oxygen evolving complex	1.85E-03
18	GO:0009536: plastid	2.09E-03
19	GO:0009501: amyloplast	2.25E-03
20	GO:0031357: integral component of chloroplast inner membrane	2.57E-03
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	2.57E-03
22	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.76E-03
23	GO:0009579: thylakoid	3.18E-03
24	GO:0005886: plasma membrane	3.99E-03
25	GO:0019897: extrinsic component of plasma membrane	4.27E-03
26	GO:0010007: magnesium chelatase complex	4.27E-03
27	GO:0030139: endocytic vesicle	4.27E-03
28	GO:0009528: plastid inner membrane	4.27E-03
29	GO:0031977: thylakoid lumen	4.79E-03
30	GO:0019898: extrinsic component of membrane	4.82E-03
31	GO:0032585: multivesicular body membrane	6.25E-03
32	GO:0015630: microtubule cytoskeleton	6.25E-03
33	GO:0005719: nuclear euchromatin	6.25E-03
34	GO:0042646: plastid nucleoid	6.25E-03
35	GO:0010319: stromule	7.31E-03
36	GO:0030095: chloroplast photosystem II	7.97E-03
37	GO:0030663: COPI-coated vesicle membrane	8.49E-03
38	GO:0009527: plastid outer membrane	8.49E-03
39	GO:0009707: chloroplast outer membrane	1.20E-02
40	GO:0009532: plastid stroma	1.36E-02
41	GO:0009706: chloroplast inner membrane	1.48E-02
42	GO:0015629: actin cytoskeleton	1.63E-02
43	GO:0005655: nucleolar ribonuclease P complex	1.66E-02
44	GO:0009986: cell surface	1.97E-02
45	GO:0009533: chloroplast stromal thylakoid	1.97E-02
46	GO:0048226: Casparian strip	2.30E-02
47	GO:0012507: ER to Golgi transport vesicle membrane	2.30E-02
48	GO:0009523: photosystem II	2.60E-02
49	GO:0043231: intracellular membrane-bounded organelle	2.91E-02
50	GO:0005720: nuclear heterochromatin	3.02E-02
51	GO:0005680: anaphase-promoting complex	3.02E-02
52	GO:0042644: chloroplast nucleoid	3.02E-02
53	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.02E-02
54	GO:0005874: microtubule	3.05E-02
55	GO:0016604: nuclear body	3.40E-02
56	GO:0015030: Cajal body	3.40E-02
57	GO:0031225: anchored component of membrane	3.42E-02
58	GO:0000418: DNA-directed RNA polymerase IV complex	3.80E-02
59	GO:0016459: myosin complex	3.80E-02
60	GO:0030125: clathrin vesicle coat	3.80E-02
61	GO:0090404: pollen tube tip	4.21E-02