Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G29840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:0044154: histone H3-K14 acetylation0.00E+00
3GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
4GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
5GO:0006573: valine metabolic process0.00E+00
6GO:0000372: Group I intron splicing0.00E+00
7GO:0043972: histone H3-K23 acetylation0.00E+00
8GO:0006114: glycerol biosynthetic process0.00E+00
9GO:0033528: S-methylmethionine cycle0.00E+00
10GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
11GO:0000373: Group II intron splicing6.31E-07
12GO:0009793: embryo development ending in seed dormancy1.36E-05
13GO:0034757: negative regulation of iron ion transport4.07E-04
14GO:0006419: alanyl-tRNA aminoacylation4.07E-04
15GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.07E-04
16GO:0043971: histone H3-K18 acetylation4.07E-04
17GO:0043489: RNA stabilization4.07E-04
18GO:1902025: nitrate import4.07E-04
19GO:0000012: single strand break repair4.07E-04
20GO:0043266: regulation of potassium ion transport4.07E-04
21GO:0006551: leucine metabolic process4.07E-04
22GO:0043087: regulation of GTPase activity4.07E-04
23GO:2000021: regulation of ion homeostasis4.07E-04
24GO:0006436: tryptophanyl-tRNA aminoacylation4.07E-04
25GO:0090548: response to nitrate starvation4.07E-04
26GO:0000066: mitochondrial ornithine transport4.07E-04
27GO:0032544: plastid translation5.80E-04
28GO:0006420: arginyl-tRNA aminoacylation8.83E-04
29GO:1900871: chloroplast mRNA modification8.83E-04
30GO:0006435: threonyl-tRNA aminoacylation8.83E-04
31GO:0010271: regulation of chlorophyll catabolic process8.83E-04
32GO:0006432: phenylalanyl-tRNA aminoacylation8.83E-04
33GO:0051214: RNA virus induced gene silencing8.83E-04
34GO:0045037: protein import into chloroplast stroma1.25E-03
35GO:0031022: nuclear migration along microfilament1.43E-03
36GO:0080117: secondary growth1.43E-03
37GO:0031145: anaphase-promoting complex-dependent catabolic process1.43E-03
38GO:0006696: ergosterol biosynthetic process1.43E-03
39GO:0030029: actin filament-based process1.43E-03
40GO:0009102: biotin biosynthetic process2.07E-03
41GO:0030071: regulation of mitotic metaphase/anaphase transition2.07E-03
42GO:0051639: actin filament network formation2.07E-03
43GO:0034059: response to anoxia2.07E-03
44GO:0010239: chloroplast mRNA processing2.07E-03
45GO:0044211: CTP salvage2.07E-03
46GO:0009800: cinnamic acid biosynthetic process2.07E-03
47GO:0010306: rhamnogalacturonan II biosynthetic process2.07E-03
48GO:0042989: sequestering of actin monomers2.07E-03
49GO:2000904: regulation of starch metabolic process2.07E-03
50GO:0051513: regulation of monopolar cell growth2.07E-03
51GO:0007010: cytoskeleton organization2.22E-03
52GO:0005992: trehalose biosynthetic process2.22E-03
53GO:0051781: positive regulation of cell division2.78E-03
54GO:0051764: actin crosslink formation2.78E-03
55GO:0048442: sepal development2.78E-03
56GO:0051322: anaphase2.78E-03
57GO:0006661: phosphatidylinositol biosynthetic process2.78E-03
58GO:0008295: spermidine biosynthetic process2.78E-03
59GO:0044206: UMP salvage2.78E-03
60GO:0006021: inositol biosynthetic process2.78E-03
61GO:0009451: RNA modification3.02E-03
62GO:0010158: abaxial cell fate specification3.56E-03
63GO:0032876: negative regulation of DNA endoreduplication3.56E-03
64GO:0080110: sporopollenin biosynthetic process3.56E-03
65GO:0009696: salicylic acid metabolic process3.56E-03
66GO:0030041: actin filament polymerization3.56E-03
67GO:0009904: chloroplast accumulation movement3.56E-03
68GO:0031365: N-terminal protein amino acid modification3.56E-03
69GO:0016123: xanthophyll biosynthetic process3.56E-03
70GO:0016117: carotenoid biosynthetic process3.80E-03
71GO:0010087: phloem or xylem histogenesis4.11E-03
72GO:0016554: cytidine to uridine editing4.41E-03
73GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.41E-03
74GO:0048831: regulation of shoot system development4.41E-03
75GO:0006559: L-phenylalanine catabolic process4.41E-03
76GO:0006206: pyrimidine nucleobase metabolic process4.41E-03
77GO:0048868: pollen tube development4.43E-03
78GO:0046323: glucose import4.43E-03
79GO:0007018: microtubule-based movement4.76E-03
80GO:0010076: maintenance of floral meristem identity5.31E-03
81GO:0009082: branched-chain amino acid biosynthetic process5.31E-03
82GO:0048509: regulation of meristem development5.31E-03
83GO:0009099: valine biosynthetic process5.31E-03
84GO:0009903: chloroplast avoidance movement5.31E-03
85GO:0009648: photoperiodism5.31E-03
86GO:0048316: seed development5.43E-03
87GO:0009658: chloroplast organization5.68E-03
88GO:0007264: small GTPase mediated signal transduction5.85E-03
89GO:0010050: vegetative phase change6.28E-03
90GO:0010098: suspensor development6.28E-03
91GO:0006400: tRNA modification6.28E-03
92GO:0051510: regulation of unidimensional cell growth6.28E-03
93GO:0009610: response to symbiotic fungus6.28E-03
94GO:0048564: photosystem I assembly7.30E-03
95GO:0009850: auxin metabolic process7.30E-03
96GO:0006353: DNA-templated transcription, termination7.30E-03
97GO:0070413: trehalose metabolism in response to stress7.30E-03
98GO:0032875: regulation of DNA endoreduplication7.30E-03
99GO:0045010: actin nucleation7.30E-03
100GO:0000105: histidine biosynthetic process7.30E-03
101GO:0071482: cellular response to light stimulus8.38E-03
102GO:0009827: plant-type cell wall modification8.38E-03
103GO:0009097: isoleucine biosynthetic process8.38E-03
104GO:0044030: regulation of DNA methylation8.38E-03
105GO:0016311: dephosphorylation9.85E-03
106GO:0010267: production of ta-siRNAs involved in RNA interference1.07E-02
107GO:0009086: methionine biosynthetic process1.07E-02
108GO:1900865: chloroplast RNA modification1.07E-02
109GO:0016571: histone methylation1.07E-02
110GO:0008202: steroid metabolic process1.07E-02
111GO:0016573: histone acetylation1.07E-02
112GO:0000160: phosphorelay signal transduction system1.09E-02
113GO:0048441: petal development1.19E-02
114GO:0006535: cysteine biosynthetic process from serine1.19E-02
115GO:0030422: production of siRNA involved in RNA interference1.19E-02
116GO:0006259: DNA metabolic process1.19E-02
117GO:0006265: DNA topological change1.32E-02
118GO:0010216: maintenance of DNA methylation1.32E-02
119GO:0006790: sulfur compound metabolic process1.46E-02
120GO:0010582: floral meristem determinacy1.46E-02
121GO:0030036: actin cytoskeleton organization1.59E-02
122GO:0008283: cell proliferation1.70E-02
123GO:0006302: double-strand break repair1.74E-02
124GO:0048440: carpel development1.74E-02
125GO:0009266: response to temperature stimulus1.74E-02
126GO:0080188: RNA-directed DNA methylation1.88E-02
127GO:0090351: seedling development1.88E-02
128GO:0046854: phosphatidylinositol phosphorylation1.88E-02
129GO:0009636: response to toxic substance1.92E-02
130GO:0019344: cysteine biosynthetic process2.19E-02
131GO:0030150: protein import into mitochondrial matrix2.19E-02
132GO:0006338: chromatin remodeling2.19E-02
133GO:0051017: actin filament bundle assembly2.19E-02
134GO:0006289: nucleotide-excision repair2.19E-02
135GO:0006364: rRNA processing2.30E-02
136GO:0009736: cytokinin-activated signaling pathway2.30E-02
137GO:0006418: tRNA aminoacylation for protein translation2.35E-02
138GO:0010073: meristem maintenance2.35E-02
139GO:0015992: proton transport2.51E-02
140GO:0016226: iron-sulfur cluster assembly2.68E-02
141GO:0035428: hexose transmembrane transport2.68E-02
142GO:0071215: cellular response to abscisic acid stimulus2.85E-02
143GO:0010584: pollen exine formation3.03E-02
144GO:0048443: stamen development3.03E-02
145GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.15E-02
146GO:0070417: cellular response to cold3.21E-02
147GO:0006396: RNA processing3.37E-02
148GO:0010268: brassinosteroid homeostasis3.58E-02
149GO:0009958: positive gravitropism3.58E-02
150GO:0045489: pectin biosynthetic process3.58E-02
151GO:0048544: recognition of pollen3.77E-02
152GO:0007059: chromosome segregation3.77E-02
153GO:0008654: phospholipid biosynthetic process3.96E-02
154GO:0000302: response to reactive oxygen species4.15E-02
155GO:0016132: brassinosteroid biosynthetic process4.15E-02
156GO:0009058: biosynthetic process4.31E-02
157GO:0031047: gene silencing by RNA4.35E-02
158GO:0009845: seed germination4.42E-02
159GO:0010090: trichome morphogenesis4.55E-02
160GO:0016125: sterol metabolic process4.76E-02
161GO:0009790: embryo development4.76E-02
RankGO TermAdjusted P value
1GO:0043136: glycerol-3-phosphatase activity0.00E+00
2GO:0000121: glycerol-1-phosphatase activity0.00E+00
3GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
4GO:0019144: ADP-sugar diphosphatase activity0.00E+00
5GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
6GO:0050613: delta14-sterol reductase activity0.00E+00
7GO:0004401: histidinol-phosphatase activity0.00E+00
8GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
9GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
12GO:0052834: inositol monophosphate phosphatase activity0.00E+00
13GO:0003723: RNA binding4.85E-05
14GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.07E-04
15GO:0080042: ADP-glucose pyrophosphohydrolase activity4.07E-04
16GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity4.07E-04
17GO:0004813: alanine-tRNA ligase activity4.07E-04
18GO:0005290: L-histidine transmembrane transporter activity4.07E-04
19GO:0003984: acetolactate synthase activity4.07E-04
20GO:0051996: squalene synthase activity4.07E-04
21GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.07E-04
22GO:0004830: tryptophan-tRNA ligase activity4.07E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity4.07E-04
24GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity8.83E-04
25GO:0004047: aminomethyltransferase activity8.83E-04
26GO:0004766: spermidine synthase activity8.83E-04
27GO:0052832: inositol monophosphate 3-phosphatase activity8.83E-04
28GO:0008805: carbon-monoxide oxygenase activity8.83E-04
29GO:0008934: inositol monophosphate 1-phosphatase activity8.83E-04
30GO:0052833: inositol monophosphate 4-phosphatase activity8.83E-04
31GO:0000064: L-ornithine transmembrane transporter activity8.83E-04
32GO:0004826: phenylalanine-tRNA ligase activity8.83E-04
33GO:0004829: threonine-tRNA ligase activity8.83E-04
34GO:0050736: O-malonyltransferase activity8.83E-04
35GO:0009884: cytokinin receptor activity8.83E-04
36GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.83E-04
37GO:0050017: L-3-cyanoalanine synthase activity8.83E-04
38GO:0080041: ADP-ribose pyrophosphohydrolase activity8.83E-04
39GO:0004814: arginine-tRNA ligase activity8.83E-04
40GO:0004805: trehalose-phosphatase activity9.55E-04
41GO:0000049: tRNA binding1.25E-03
42GO:0009982: pseudouridine synthase activity1.42E-03
43GO:0045548: phenylalanine ammonia-lyase activity1.43E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.43E-03
45GO:0032549: ribonucleoside binding1.43E-03
46GO:0016805: dipeptidase activity1.43E-03
47GO:0005034: osmosensor activity1.43E-03
48GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.43E-03
49GO:0005096: GTPase activator activity1.64E-03
50GO:0001872: (1->3)-beta-D-glucan binding2.07E-03
51GO:0015189: L-lysine transmembrane transporter activity2.07E-03
52GO:0005354: galactose transmembrane transporter activity2.07E-03
53GO:0009678: hydrogen-translocating pyrophosphatase activity2.07E-03
54GO:0015181: arginine transmembrane transporter activity2.07E-03
55GO:0017172: cysteine dioxygenase activity2.07E-03
56GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.07E-03
57GO:0080031: methyl salicylate esterase activity2.07E-03
58GO:0031418: L-ascorbic acid binding2.22E-03
59GO:0010385: double-stranded methylated DNA binding2.78E-03
60GO:0070628: proteasome binding2.78E-03
61GO:0042277: peptide binding2.78E-03
62GO:0004845: uracil phosphoribosyltransferase activity2.78E-03
63GO:0003785: actin monomer binding3.56E-03
64GO:0005471: ATP:ADP antiporter activity3.56E-03
65GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.56E-03
66GO:0080030: methyl indole-3-acetate esterase activity4.41E-03
67GO:0031593: polyubiquitin binding4.41E-03
68GO:0004519: endonuclease activity4.51E-03
69GO:0005355: glucose transmembrane transporter activity4.76E-03
70GO:0004124: cysteine synthase activity5.31E-03
71GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.31E-03
72GO:0004849: uridine kinase activity5.31E-03
73GO:0004656: procollagen-proline 4-dioxygenase activity5.31E-03
74GO:0019900: kinase binding5.31E-03
75GO:0008235: metalloexopeptidase activity6.28E-03
76GO:0004427: inorganic diphosphatase activity6.28E-03
77GO:0043022: ribosome binding7.30E-03
78GO:0004525: ribonuclease III activity7.30E-03
79GO:0016597: amino acid binding7.48E-03
80GO:0008142: oxysterol binding8.38E-03
81GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.38E-03
82GO:0005525: GTP binding8.49E-03
83GO:0015144: carbohydrate transmembrane transporter activity1.11E-02
84GO:0004673: protein histidine kinase activity1.19E-02
85GO:0005351: sugar:proton symporter activity1.29E-02
86GO:0005089: Rho guanyl-nucleotide exchange factor activity1.32E-02
87GO:0003697: single-stranded DNA binding1.32E-02
88GO:0001054: RNA polymerase I activity1.32E-02
89GO:0004177: aminopeptidase activity1.32E-02
90GO:0008017: microtubule binding1.41E-02
91GO:0003725: double-stranded RNA binding1.59E-02
92GO:0015266: protein channel activity1.59E-02
93GO:0000155: phosphorelay sensor kinase activity1.59E-02
94GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.71E-02
95GO:0008266: poly(U) RNA binding1.74E-02
96GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.74E-02
97GO:0046872: metal ion binding1.77E-02
98GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.04E-02
99GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.04E-02
100GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.04E-02
101GO:0043130: ubiquitin binding2.19E-02
102GO:0005528: FK506 binding2.19E-02
103GO:0043424: protein histidine kinase binding2.35E-02
104GO:0051087: chaperone binding2.35E-02
105GO:0003690: double-stranded DNA binding2.38E-02
106GO:0003777: microtubule motor activity2.55E-02
107GO:0030570: pectate lyase activity2.85E-02
108GO:0004812: aminoacyl-tRNA ligase activity3.21E-02
109GO:0004402: histone acetyltransferase activity3.39E-02
110GO:0008536: Ran GTPase binding3.58E-02
111GO:0004527: exonuclease activity3.58E-02
112GO:0050662: coenzyme binding3.77E-02
113GO:0010181: FMN binding3.77E-02
114GO:0019901: protein kinase binding3.96E-02
115GO:0019843: rRNA binding4.09E-02
116GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.20E-02
117GO:0004518: nuclease activity4.35E-02
118GO:0016740: transferase activity4.44E-02
119GO:0030170: pyridoxal phosphate binding4.53E-02
120GO:0000156: phosphorelay response regulator activity4.55E-02
121GO:0051015: actin filament binding4.55E-02
122GO:0003684: damaged DNA binding4.76E-02
123GO:0016791: phosphatase activity4.76E-02
124GO:0003924: GTPase activity4.88E-02
125GO:0008565: protein transporter activity4.88E-02
126GO:0008483: transaminase activity4.97E-02
127GO:0008237: metallopeptidase activity4.97E-02
128GO:0005200: structural constituent of cytoskeleton4.97E-02
RankGO TermAdjusted P value
1GO:0009537: proplastid0.00E+00
2GO:0005948: acetolactate synthase complex0.00E+00
3GO:0009507: chloroplast7.06E-14
4GO:0009570: chloroplast stroma4.51E-04
5GO:0009501: amyloplast4.76E-04
6GO:0009513: etioplast8.83E-04
7GO:0030529: intracellular ribonucleoprotein complex1.10E-03
8GO:0009574: preprophase band1.42E-03
9GO:0009509: chromoplast1.43E-03
10GO:0032432: actin filament bundle2.07E-03
11GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.78E-03
12GO:0030663: COPI-coated vesicle membrane2.78E-03
13GO:0005871: kinesin complex3.80E-03
14GO:0031209: SCAR complex4.41E-03
15GO:0009536: plastid6.79E-03
16GO:0031305: integral component of mitochondrial inner membrane7.30E-03
17GO:0005874: microtubule7.48E-03
18GO:0031969: chloroplast membrane7.89E-03
19GO:0005623: cell9.10E-03
20GO:0005736: DNA-directed RNA polymerase I complex9.51E-03
21GO:0005680: anaphase-promoting complex9.51E-03
22GO:0016604: nuclear body1.07E-02
23GO:0005759: mitochondrial matrix1.18E-02
24GO:0030125: clathrin vesicle coat1.19E-02
25GO:0005884: actin filament1.32E-02
26GO:0005938: cell cortex1.59E-02
27GO:0016602: CCAAT-binding factor complex1.59E-02
28GO:0005578: proteinaceous extracellular matrix1.59E-02
29GO:0030176: integral component of endoplasmic reticulum membrane1.88E-02
30GO:0009505: plant-type cell wall1.96E-02
31GO:0009532: plastid stroma2.51E-02
32GO:0015629: actin cytoskeleton2.85E-02
33GO:0005744: mitochondrial inner membrane presequence translocase complex3.03E-02
34GO:0009706: chloroplast inner membrane3.27E-02
35GO:0010287: plastoglobule3.88E-02
36GO:0031965: nuclear membrane3.96E-02
37GO:0009295: nucleoid4.97E-02
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Gene type



Gene DE type